FvH4_7g23352
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000106
Physical Location & Seq
Reverse (-)
18251579 .. 18253551
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23352.t1

Sequence Viewer

Length: 1107 bp
ATGGTTGAGGTCATTGAAACCCCAGAATCACAAAACACCAAAGTCATTCCTTCACCTAAAGACAAAGATGTGAATGATTTTGACACACCCAACCCTTTGATCTTACACCCATCTGATACACCAGGGCTCAAACTGGTTAGTACACTGCTGGACGGAAACAACTATGGAGAATGGAGCCGAGCTATGTGCCTTAGTCTCAGCGCCAAGAACAAGATAGGACTGATTGACGGTACAATAAAACCACCTTCACGCACTGATCCAAGGTTTCCTATGTGGAAGTGTTGCAATGACATGGTGTTATCATGGATCGTTCACTCAATTCAACCAAGCATTGCATGTGGAGTGATCTTCTCTGATACGGCATTTGGAGTGTGGAGAGATCTCCATGATTTATTCTCTCAAGGAGATGATTCAAGGATTTATCAAATTCGGCAAGAGATCGCCGAATGTCGTCAAGGCCAGCAATCTGCTTCTATCTATTACACTAAACTCAAAGCTCTTTGGGATGAATTATCCTCTTACCAGGAACCTCTTGCTTGTAGTTGTGATGCTATGCAGATGTTGTTTGACCGGGAGGAGAAAGAGAGAGTCATGCAATTCCTCATGGGGTTGAATGAATCTTACTCAACTATTCGCGGGTCAATCTTGATGATGAGTCCTCTTCCAAACACAAGGAAGGTTCATGGTTTGATCCTTCAACATGAGAGGCAGATGGAGGCGGCAGCTCGTCGAGATATCCCACAAACATCTCATGCTATGCAGGCTGTGAGGACATCAGATCCACCAAAATCTTCCTTCTTCCGCAAACCATTGAAATGCACGTATTGTGAGGAAGACACTCATTTGGTGGATCGCTGCTTTTACCTGAAAGGGTTTCCAGTGGGCCACAAATGGCATGGCAAGAATGTGAAGCCCAGAAACAAAAGAGGTTCAGCCCACAACATTGAGTTGAAGAAGGAATCCACAAATGAAAGCCCAACCCTCACAGCTAATGAATACAAGCAAATCATGGCCATGCTGCACGAAAAGAACGGTAATAATCAACCATTCGCAAATGCGACAGGACGTGGATACGAAGAGGACGATTGGCCTGGGCAAGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

369

Amino Acids

41.88

Weight (kDa)

6.6

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 36 - 82 4.8e-19 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 636
AciI CCGC 3 cut(s) 636, 719, 802
AclWI GGATC 5 cut(s) 251, 314, 685, 773, 858
AcoI YGGCCR 1 cut(s) 1011
AcsI RAATTY 1 cut(s) 426
AfaI GTAC 2 cut(s) 142, 232
AgsI TTSAA 7 cut(s) 17, 323, 414, 613, 698, 814, 952
AjiI CACGTC 1 cut(s) 1067
AjnI CCWGG 3 cut(s) 121, 522, 1090
AluBI AGCT 4 cut(s) 182, 497, 725, 989
AluI AGCT 4 cut(s) 182, 497, 725, 989
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 5 cut(s) 251, 314, 685, 773, 858
AoxI GGCC 4 cut(s) 457, 883, 1011, 1088
ApeKI GCWGC 3 cut(s) 722, 855, 1018
ApoI RAATTY 1 cut(s) 426
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 883
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 1 cut(s) 45
BalI TGGCCA 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 840
BbvI GCAGC 3 cut(s) 734, 842, 1005
BccI CCATC 2 cut(s) 118, 706
BceAI ACGGC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 3 cut(s) 123, 524, 1092
BciVI GTATCC 1 cut(s) 1064
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 204
BfuI GTATCC 1 cut(s) 1064
BglII AGATCT 1 cut(s) 379
BisI GCNGC 4 cut(s) 720, 723, 856, 1019
BlsI GCNGC 4 cut(s) 721, 724, 857, 1020
Bme1390I CCNGG 4 cut(s) 123, 524, 572, 1092
BmgBI CACGTC 1 cut(s) 1067
BmgT120I GGNCC 1 cut(s) 883
BmiI GGNNCC 2 cut(s) 176, 528
BmrFI CCNGG 4 cut(s) 123, 524, 572, 1092
BmsI GCATC 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 572
BsaAI YACGTR 1 cut(s) 822
BsaJI CCNNGG 3 cut(s) 122, 260, 1091
Bse1I ACTGG 2 cut(s) 138, 878
Bse3DI GCAATG 2 cut(s) 292, 330
BseBI CCWGG 3 cut(s) 123, 524, 1092
BseDI CCNNGG 3 cut(s) 122, 260, 1091
BseGI GGATG 1 cut(s) 511
BseMI GCAATG 2 cut(s) 292, 330
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 138, 878
BseRI GAGGAG 1 cut(s) 590
BseXI GCAGC 3 cut(s) 734, 842, 1005
BsgI GTGCAG 1 cut(s) 1004
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 4 cut(s) 459, 885, 1013, 1090
BsiSI CCGG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 4 cut(s) 459, 885, 1013, 1090
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
BspACI CCGC 3 cut(s) 636, 719, 802
BspANI GGCC 4 cut(s) 459, 885, 1013, 1090
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 2 cut(s) 176, 528
BspPI GGATC 5 cut(s) 251, 314, 685, 773, 858
BsrDI GCAATG 2 cut(s) 292, 330
BsrI ACTGG 2 cut(s) 138, 878
BssECI CCNNGG 3 cut(s) 122, 260, 1091
BssMI GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 3 cut(s) 123, 524, 1092
Bst4CI ACNGT 2 cut(s) 230, 1034
Bst6I CTCTTC 2 cut(s) 666, 1071
BstBAI YACGTR 1 cut(s) 822
BstC8I GCNNGC 3 cut(s) 461, 762, 1098
BstDEI CTNAG 2 cut(s) 191, 197
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 1 cut(s) 636
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 9 cut(s) 102, 259, 309, 348, 382, 441, 693, 781, 853
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNI CCWGG 3 cut(s) 123, 524, 1092
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 4 cut(s) 121, 522, 570, 1090
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 3 cut(s) 734, 842, 1005
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 2 cut(s) 379, 778
BstYI RGATCY 2 cut(s) 379, 778
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 4 cut(s) 459, 885, 1013, 1090
BtrI CACGTC 1 cut(s) 1067
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 3 cut(s) 143, 252, 885
Cac8I GCNNGC 3 cut(s) 461, 762, 1098
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 883
Csp6I GTAC 2 cut(s) 141, 231
CviQI GTAC 2 cut(s) 141, 231
DdeI CTNAG 2 cut(s) 191, 197
DpnI GATC 9 cut(s) 101, 258, 308, 347, 381, 440, 692, 780, 852
DpnII GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
EaeI YGGCCR 1 cut(s) 1011
Eam1104I CTCTTC 2 cut(s) 666, 1071
EarI CTCTTC 2 cut(s) 666, 1071
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 736
EcoRII CCWGG 3 cut(s) 121, 522, 1090
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 260
FauI CCCGC 1 cut(s) 629
Fnu4HI GCNGC 4 cut(s) 720, 723, 856, 1019
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 720, 723, 856, 1019
GlaI GCGC 1 cut(s) 202
GluI GCNGC 4 cut(s) 720, 723, 856, 1019
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 4 cut(s) 459, 885, 1013, 1090
HapII CCGG 1 cut(s) 571
HhaI GCGC 1 cut(s) 203
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 6 cut(s) 26, 410, 588, 617, 655, 959
HpaII CCGG 1 cut(s) 571
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 143, 313
Hpy188I TCNGA 3 cut(s) 115, 355, 778
Hpy188III TCNNGA 2 cut(s) 646, 731
Hpy8I GTNNAC 2 cut(s) 143, 313
Hpy99I CGWCG 1 cut(s) 732
HpyAV CCTTC 6 cut(s) 60, 255, 670, 704, 805, 949
HpyCH4III ACNGT 2 cut(s) 230, 1034
HpyCH4IV ACGT 2 cut(s) 821, 1066
HpyCH4V TGCA 7 cut(s) 285, 335, 556, 595, 760, 819, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 2 cut(s) 191, 197
HpySE526I ACGT 2 cut(s) 821, 1066
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
LmnI GCTCC 1 cut(s) 174
Lsp1109I GCAGC 3 cut(s) 734, 842, 1005
LweI GCATC 1 cut(s) 538
MaeII ACGT 2 cut(s) 821, 1066
MalI GATC 9 cut(s) 101, 258, 308, 347, 381, 440, 692, 780, 852
MboI GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
MboII GAAGA 7 cut(s) 340, 653, 783, 790, 845, 964, 1088
MflI RGATCY 2 cut(s) 379, 778
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 1013
MluCI AATT 4 cut(s) 318, 426, 509, 596
MluNI TGGCCA 1 cut(s) 1013
MlyI GAGTC 2 cut(s) 597, 664
Mox20I TGGCCA 1 cut(s) 1013
MscI TGGCCA 1 cut(s) 1013
MseI TTAA 1 cut(s) 1105
MslI CAYNNNNRTG 2 cut(s) 814, 1013
Msp20I TGGCCA 1 cut(s) 1013
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 4 cut(s) 123, 524, 572, 1092
MvaI CCWGG 3 cut(s) 123, 524, 1092
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 1 cut(s) 761
NciI CCSGG 1 cut(s) 572
NdeII GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
NlaIV GGNNCC 2 cut(s) 176, 528
NmeAIII GCCGAG 1 cut(s) 203
NspI RCATGY 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 1080
PfeI GAWTC 4 cut(s) 26, 410, 617, 959
PkrI GCNGC 4 cut(s) 721, 724, 857, 1020
PleI GAGTC 2 cut(s) 596, 663
PpsI GAGTC 2 cut(s) 596, 663
Ppu21I YACGTR 1 cut(s) 822
Psp6I CCWGG 3 cut(s) 121, 522, 1090
PspGI CCWGG 3 cut(s) 121, 522, 1090
PspN4I GGNNCC 2 cut(s) 176, 528
PspPI GGNCC 1 cut(s) 883
PsuI RGATCY 2 cut(s) 379, 778
RsaI GTAC 2 cut(s) 142, 232
RsaNI GTAC 2 cut(s) 141, 231
RseI CAYNNNNRTG 2 cut(s) 814, 1013
SaqAI TTAA 1 cut(s) 1105
SatI GCNGC 4 cut(s) 720, 723, 856, 1019
Sau3AI GATC 9 cut(s) 99, 256, 306, 345, 379, 438, 690, 778, 850
Sau96I GGNCC 1 cut(s) 883
SchI GAGTC 2 cut(s) 597, 664
ScrFI CCNGG 4 cut(s) 123, 524, 572, 1092
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 1 cut(s) 538
SmiMI CAYNNNNRTG 2 cut(s) 814, 1013
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 4 cut(s) 318, 426, 509, 596
SsiI CCGC 3 cut(s) 636, 719, 802
StyD4I CCNGG 4 cut(s) 121, 522, 570, 1090
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 230, 1034
TaiI ACGT 2 cut(s) 824, 1069
TaqI TCGA 1 cut(s) 730
TasI AATT 4 cut(s) 318, 426, 509, 596
TatI WGTACW 1 cut(s) 140
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 4 cut(s) 26, 410, 617, 959
Tru1I TTAA 1 cut(s) 1105
Tru9I TTAA 1 cut(s) 1105
TscAI CASTG 3 cut(s) 150, 259, 885
TseI GCWGC 3 cut(s) 722, 855, 1018
TspDTI ATGAA 5 cut(s) 522, 630, 671, 984, 1008
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 3 cut(s) 150, 259, 885
XapI RAATTY 1 cut(s) 426
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.