Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 35 - 81 | 1.9e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 736 |
| AcoI | YGGCCR | 1 cut(s) | 942 |
| AcsI | RAATTY | 2 cut(s) | 593, 809 |
| AcyI | GRCGYC | 1 cut(s) | 513 |
| AfaI | GTAC | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 352, 673, 797 |
| AgsI | TTSAA | 1 cut(s) | 32 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AluBI | AGCT | 5 cut(s) | 379, 487, 551, 618, 997 |
| AluI | AGCT | 5 cut(s) | 379, 487, 551, 618, 997 |
| AoxI | GGCC | 5 cut(s) | 239, 564, 675, 715, 942 |
| ApeKI | GCWGC | 2 cut(s) | 379, 548 |
| ApoI | RAATTY | 2 cut(s) | 593, 809 |
| AspLEI | GCGC | 1 cut(s) | 691 |
| AspS9I | GGNCC | 2 cut(s) | 274, 652 |
| AsuHPI | GGTGA | 3 cut(s) | 20, 775, 784 |
| AvaII | GGWCC | 2 cut(s) | 274, 652 |
| BalI | TGGCCA | 1 cut(s) | 944 |
| BanI | GGYRCC | 1 cut(s) | 736 |
| BanII | GRGCYC | 2 cut(s) | 47, 862 |
| BbsI | GAAGAC | 1 cut(s) | 159 |
| BbvI | GCAGC | 2 cut(s) | 366, 560 |
| BccI | CCATC | 5 cut(s) | 111, 142, 218, 595, 870 |
| BceAI | ACGGC | 1 cut(s) | 750 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BfaI | CTAG | 2 cut(s) | 374, 792 |
| BfmI | CTRYAG | 1 cut(s) | 853 |
| BfoI | RGCGCY | 1 cut(s) | 692 |
| BisI | GCNGC | 2 cut(s) | 380, 549 |
| BlsI | GCNGC | 2 cut(s) | 381, 550 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 2 cut(s) | 274, 652 |
| BmgT120I | GGNCC | 2 cut(s) | 274, 652 |
| BmiI | GGNNCC | 5 cut(s) | 26, 275, 313, 654, 738 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BmsI | GCATC | 3 cut(s) | 346, 535, 758 |
| BpiI | GAAGAC | 1 cut(s) | 159 |
| BsaHI | GRCGYC | 1 cut(s) | 513 |
| BsaJI | CCNNGG | 1 cut(s) | 71 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 9, 39, 84, 114 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 352, 673, 797 |
| Bse3DI | GCAATG | 4 cut(s) | 275, 346, 690, 889 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 1 cut(s) | 71 |
| BseGI | GGATG | 6 cut(s) | 88, 342, 361, 470, 508, 862 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 352, 673, 797 |
| BseMI | GCAATG | 4 cut(s) | 275, 346, 690, 889 |
| BseMII | CTCAG | 4 cut(s) | 78, 123, 345, 477 |
| BseXI | GCAGC | 2 cut(s) | 366, 560 |
| BsgI | GTGCAG | 1 cut(s) | 194 |
| BshFI | GGCC | 5 cut(s) | 241, 566, 677, 717, 944 |
| BshNI | GGYRCC | 1 cut(s) | 736 |
| BslFI | GGGAC | 3 cut(s) | 287, 618, 958 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 352, 673, 797 |
| BsmFI | GGGAC | 3 cut(s) | 287, 618, 958 |
| BsmI | GAATGC | 1 cut(s) | 933 |
| BsnI | GGCC | 5 cut(s) | 241, 566, 677, 717, 944 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 862 |
| Bsp143I | GATC | 1 cut(s) | 112 |
| Bsp19I | CCATGG | 1 cut(s) | 71 |
| BspANI | GGCC | 5 cut(s) | 241, 566, 677, 717, 944 |
| BspCNI | CTCAG | 4 cut(s) | 77, 122, 344, 476 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 5 cut(s) | 26, 275, 313, 654, 738 |
| BspMAI | CTGCAG | 1 cut(s) | 857 |
| BspT107I | GGYRCC | 1 cut(s) | 736 |
| BsrDI | GCAATG | 4 cut(s) | 275, 346, 690, 889 |
| BssECI | CCNNGG | 1 cut(s) | 71 |
| BssMI | GATC | 1 cut(s) | 112 |
| BssNI | GRCGYC | 1 cut(s) | 513 |
| BssT1I | CCWWGG | 1 cut(s) | 71 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 3 cut(s) | 278, 409, 446 |
| Bst6I | CTCTTC | 2 cut(s) | 58, 663 |
| BstACI | GRCGYC | 1 cut(s) | 513 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 879 |
| BstDEI | CTNAG | 4 cut(s) | 64, 109, 331, 463 |
| BstDSI | CCRYGG | 1 cut(s) | 71 |
| BstEII | GGTNACC | 1 cut(s) | 772 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 671, 795 |
| BstF5I | GGATG | 6 cut(s) | 88, 342, 361, 470, 508, 862 |
| BstH2I | RGCGCY | 1 cut(s) | 692 |
| BstHHI | GCGC | 1 cut(s) | 691 |
| BstKTI | GATC | 1 cut(s) | 115 |
| BstMBI | GATC | 1 cut(s) | 112 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 379, 521, 879 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstPI | GGTNACC | 1 cut(s) | 772 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstSFI | CTRYAG | 1 cut(s) | 853 |
| BstV1I | GCAGC | 2 cut(s) | 366, 560 |
| BstV2I | GAAGAC | 1 cut(s) | 159 |
| BsuRI | GGCC | 5 cut(s) | 241, 566, 677, 717, 944 |
| BtgI | CCRYGG | 1 cut(s) | 71 |
| BtsCI | GGATG | 6 cut(s) | 88, 342, 361, 470, 508, 862 |
| BtsI | GCAGTG | 1 cut(s) | 343 |
| BtsIMutI | CAGTG | 2 cut(s) | 143, 343 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 2 cut(s) | 274, 652 |
| CseI | GACGC | 1 cut(s) | 521 |
| CsiI | ACCWGGT | 1 cut(s) | 118 |
| Csp6I | GTAC | 1 cut(s) | 456 |
| CviAII | CATG | 8 cut(s) | 72, 168, 187, 440, 589, 698, 829, 967 |
| CviQI | GTAC | 1 cut(s) | 456 |
| DdeI | CTNAG | 4 cut(s) | 64, 109, 331, 463 |
| DpnI | GATC | 1 cut(s) | 114 |
| DpnII | GATC | 1 cut(s) | 112 |
| EaeI | YGGCCR | 1 cut(s) | 942 |
| Eam1104I | CTCTTC | 2 cut(s) | 58, 663 |
| EarI | CTCTTC | 2 cut(s) | 58, 663 |
| Eco130I | CCWWGG | 1 cut(s) | 71 |
| Eco147I | AGGCCT | 2 cut(s) | 566, 677 |
| Eco24I | GRGCYC | 2 cut(s) | 47, 862 |
| Eco32I | GATATC | 1 cut(s) | 328 |
| Eco47I | GGWCC | 2 cut(s) | 274, 652 |
| Eco91I | GGTNACC | 1 cut(s) | 772 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 671, 795 |
| EcoO65I | GGTNACC | 1 cut(s) | 772 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| EcoRV | GATATC | 1 cut(s) | 328 |
| EcoT14I | CCWWGG | 1 cut(s) | 71 |
| EcoT38I | GRGCYC | 2 cut(s) | 47, 862 |
| ErhI | CCWWGG | 1 cut(s) | 71 |
| FaeI | CATG | 8 cut(s) | 75, 171, 190, 443, 592, 701, 832, 970 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 200, 232 |
| FaqI | GGGAC | 3 cut(s) | 287, 618, 958 |
| FatI | CATG | 8 cut(s) | 71, 167, 186, 439, 588, 697, 828, 966 |
| Fnu4HI | GCNGC | 2 cut(s) | 380, 549 |
| FokI | GGATG | 6 cut(s) | 75, 329, 368, 457, 515, 849 |
| FriOI | GRGCYC | 2 cut(s) | 47, 862 |
| Fsp4HI | GCNGC | 2 cut(s) | 380, 549 |
| FspBI | CTAG | 2 cut(s) | 374, 792 |
| GlaI | GCGC | 1 cut(s) | 690 |
| GluI | GCNGC | 2 cut(s) | 380, 549 |
| HaeII | RGCGCY | 1 cut(s) | 692 |
| HaeIII | GGCC | 5 cut(s) | 241, 566, 677, 717, 944 |
| HgaI | GACGC | 1 cut(s) | 521 |
| HhaI | GCGC | 1 cut(s) | 691 |
| Hin1I | GRCGYC | 1 cut(s) | 513 |
| Hin1II | CATG | 8 cut(s) | 75, 171, 190, 443, 592, 701, 832, 970 |
| Hin6I | GCGC | 1 cut(s) | 689 |
| HinP1I | GCGC | 1 cut(s) | 689 |
| HincII | GTYRAC | 1 cut(s) | 732 |
| HindII | GTYRAC | 1 cut(s) | 732 |
| HindIII | AAGCTT | 1 cut(s) | 995 |
| HinfI | GANTC | 1 cut(s) | 244 |
| HphI | GGTGA | 3 cut(s) | 20, 775, 784 |
| Hpy166II | GTNNAC | 2 cut(s) | 449, 732 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 112, 322, 663, 867 |
| Hpy188III | TCNNGA | 4 cut(s) | 440, 481, 598, 650 |
| Hpy8I | GTNNAC | 2 cut(s) | 449, 732 |
| HpyAV | CCTTC | 8 cut(s) | 8, 26, 205, 502, 763, 791, 911, 931 |
| HpyCH4III | ACNGT | 3 cut(s) | 278, 409, 446 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 379, 521, 879 |
| HpyF3I | CTNAG | 4 cut(s) | 64, 109, 331, 463 |
| Hsp92I | GRCGYC | 1 cut(s) | 513 |
| Hsp92II | CATG | 8 cut(s) | 75, 171, 190, 443, 592, 701, 832, 970 |
| HspAI | GCGC | 1 cut(s) | 689 |
| Kzo9I | GATC | 1 cut(s) | 112 |
| LmnI | GCTCC | 2 cut(s) | 30, 311 |
| LpnPI | CCDG | 9 cut(s) | 25, 105, 132, 267, 318, 509, 611, 635, 680 |
| Lsp1109I | GCAGC | 2 cut(s) | 366, 560 |
| LweI | GCATC | 3 cut(s) | 346, 535, 758 |
| MabI | ACCWGGT | 1 cut(s) | 118 |
| MaeI | CTAG | 2 cut(s) | 374, 792 |
| MaeIII | GTNAC | 4 cut(s) | 8, 281, 466, 772 |
| MalI | GATC | 1 cut(s) | 114 |
| MboI | GATC | 1 cut(s) | 112 |
| MboII | GAAGA | 7 cut(s) | 45, 164, 335, 645, 650, 778, 936 |
| MhlI | GDGCHC | 2 cut(s) | 47, 862 |
| MlsI | TGGCCA | 1 cut(s) | 944 |
| MluCI | AATT | 4 cut(s) | 157, 538, 593, 809 |
| MluNI | TGGCCA | 1 cut(s) | 944 |
| MlyI | GAGTC | 1 cut(s) | 238 |
| MnlI | CCTC | 9 cut(s) | 73, 356, 527, 550, 666, 701, 707, 914, 986 |
| Mox20I | TGGCCA | 1 cut(s) | 944 |
| MscI | TGGCCA | 1 cut(s) | 944 |
| MseI | TTAA | 4 cut(s) | 201, 561, 609, 786 |
| MslI | CAYNNNNRTG | 2 cut(s) | 444, 900 |
| Msp20I | TGGCCA | 1 cut(s) | 944 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| Mva1269I | GAATGC | 1 cut(s) | 933 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 379, 521, 879 |
| NcoI | CCATGG | 1 cut(s) | 71 |
| NdeII | GATC | 1 cut(s) | 112 |
| NlaIII | CATG | 8 cut(s) | 75, 171, 190, 443, 592, 701, 832, 970 |
| NlaIV | GGNNCC | 5 cut(s) | 26, 275, 313, 654, 738 |
| NmuCI | GTSAC | 3 cut(s) | 8, 466, 772 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PceI | AGGCCT | 2 cut(s) | 566, 677 |
| PctI | GAATGC | 1 cut(s) | 933 |
| PkrI | GCNGC | 2 cut(s) | 381, 550 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspEI | GGTNACC | 1 cut(s) | 772 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 5 cut(s) | 26, 275, 313, 654, 738 |
| PspPI | GGNCC | 2 cut(s) | 274, 652 |
| PstI | CTGCAG | 1 cut(s) | 857 |
| RsaI | GTAC | 1 cut(s) | 457 |
| RsaNI | GTAC | 1 cut(s) | 456 |
| RseI | CAYNNNNRTG | 2 cut(s) | 444, 900 |
| SaqAI | TTAA | 4 cut(s) | 201, 561, 609, 786 |
| SatI | GCNGC | 2 cut(s) | 380, 549 |
| Sau3AI | GATC | 1 cut(s) | 112 |
| Sau96I | GGNCC | 2 cut(s) | 274, 652 |
| SchI | GAGTC | 1 cut(s) | 238 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SduI | GDGCHC | 2 cut(s) | 47, 862 |
| SexAI | ACCWGGT | 1 cut(s) | 118 |
| SfaNI | GCATC | 3 cut(s) | 346, 535, 758 |
| SfcI | CTRYAG | 1 cut(s) | 853 |
| SinI | GGWCC | 2 cut(s) | 274, 652 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 444, 900 |
| Sse9I | AATT | 4 cut(s) | 157, 538, 593, 809 |
| SseBI | AGGCCT | 2 cut(s) | 566, 677 |
| SspMI | CTAG | 2 cut(s) | 374, 792 |
| StuI | AGGCCT | 2 cut(s) | 566, 677 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| StyI | CCWWGG | 1 cut(s) | 71 |
| TaaI | ACNGT | 3 cut(s) | 278, 409, 446 |
| TaqI | TCGA | 1 cut(s) | 47 |
| TasI | AATT | 4 cut(s) | 157, 538, 593, 809 |
| Tru1I | TTAA | 4 cut(s) | 201, 561, 609, 786 |
| Tru9I | TTAA | 4 cut(s) | 201, 561, 609, 786 |
| TscAI | CASTG | 2 cut(s) | 150, 343 |
| TseFI | GTSAC | 3 cut(s) | 8, 466, 772 |
| TseI | GCWGC | 2 cut(s) | 379, 548 |
| Tsp45I | GTSAC | 3 cut(s) | 8, 466, 772 |
| TspDTI | ATGAA | 7 cut(s) | 273, 402, 410, 428, 605, 627, 845 |
| TspGWI | ACGGA | 2 cut(s) | 569, 738 |
| TspRI | CASTG | 2 cut(s) | 150, 343 |
| VpaK11BI | GGWCC | 2 cut(s) | 274, 652 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 671, 795 |
| XapI | RAATTY | 2 cut(s) | 593, 809 |
| XspI | CTAG | 2 cut(s) | 374, 792 |