Rw5G017950

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000106
Physical Location & Seq
Forward (+)
23126201 .. 23128240
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017950.1

Sequence Viewer

Length: 1587 bp
ATGAAAGCTCATGGTGAAAGAAAGGAGCAGCTTGTGATTGTGGAGAAAATTCTAAGGTCGATGCCTGTCAAATTTAATTACGTGGTGTGCTCCATAGAAGAATCCAACAATCTCACCACAATGTCTATTGATGAACTACAAAGTAGTCTGCTTGTTCATGAGCAAAGAATGCGTATCCATACCGGAGAGGAGCAAGCTTTGAAGGTGTCCTATGAAGACGGAGTTGGAGAAAGAGGACGAGGCTTTAGAGGCAGAGGTAGAGGAAGGGGCAGGCAACAGTTCAACAAGGCACTGGTGGAATGCTATAAATGCCACAAATTAGGACATTTCCAATACGAATGCCCTGATTGGGAGAAAGGTGCACATTATGTAGAGTTAGATGAGGGTGAAGAGATGCTGTTGATGGCACATGTTGAGCTCAACAACGCCACAAGGGAAGAATTTCGACAACATGTGAAGCTTGGTAACAACTCCAAGATGGTAGTGATGGGGAAGGGAAATGTTAGACTACACATCAATGGAATCACACATGTGATCACTGATGTCTATTATATGCCGGAGCTAAAGAACAATTTGCTTAGCATCAGTCAGCTACAAGAAAAAGGGGTTGCAATCTTGATTCAAGATGGGAAGTGCCGTGTTTATCATCCAAAGAAAGGTTTGATTATGGAAACCAATATGACCGCCAATAGAATGTTTGTGCTCCTTGCAGTCATGTCTGAGACCTTAACCTGCTTCCAAACTGCGTCTAAAGACAATACTCAAATATGGCATTGTCGGTACGGCCACCTTGGCTATAAGGGATTAAGAACTCTGCAATATAAGAAGCTTGTGAAGGGTTTGCTGGAAATAAAGACACCAACCAAGTTGCAATTGACAACTGCCTTCACCCCTCAACAAAACGGGGTGGCTGAGAGAAAGAATCGAACCATTATGAATATGGTTCGAAGCATGTTGTCAGAGAAACAAGTTCCAAAGTTTTTTTGGCCTGAAGCAGTCAACTGGACTGTATACATTCTCAATCGAAGCCCCACCTTGATAGTGAAGGAATTGACTCCAGAAGAAGCTTGGAATGGCATCAAACCATCGGTTCACCACTTCAGGGTCTTTGGTTGCATTGCACATGTCGATGTTCCAGAAGCTAGAAGGAAGAAATTGGATGATAAAAGCTTCAACTGTGTGATGTTGGGGATTAGTGAAGAAAGCAAAGCCTACAGGCTCTATGATCCTACTTCTAAGCGCATTGTGATTAGCAGAGATGTCATTTTTGAAGAAGATGCAAGCTGGGACTGGAAAAGAAGTGCTGAAGAAGTGAAGCTTGATGTAAATGAGTCTGGGGAAAGTGACGAAGAAGAAGGAGCTGAAGGAGAAGGAGCAACTAGCAATGAAGAAAAAGAAGCTGAAGGAGAAGGAGCAACTAGCTCTTCCTCAAATCAGTCGGAAGAAAAAGCTCAACAAGAAGGGAGGACAAGGAGATTACCAGTGTGGATGCAAGACTATGAAAGTGGAGAAGGGCTGTCAGAAGAAGAAGATTTGCACAATCTTGTGATGTTCACCTCTACGTCCGATCCAACTACGTTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

528

Amino Acids

60.45

Weight (kDa)

6.08

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 1 - 58 7.9e-06 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 148 - 203 1.6e-14 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 240 - 283 1.3e-07 GAG-pre-integrase domain
SH3_retrovirus PF25597 372 - 434 3.8e-25 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 740
AccI GTMKAC 1 cut(s) 1011
AciI CCGC 1 cut(s) 684
AclWI GGATC 2 cut(s) 1220, 1562
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 3 cut(s) 48, 71, 440
AcuI CTGAAG 5 cut(s) 1011, 1084, 1326, 1383, 1422
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 3 cut(s) 349, 656, 1102
AflIII ACRYGT 4 cut(s) 409, 451, 529, 1123
AgsI TTSAA 6 cut(s) 202, 283, 623, 1174, 1271, 1583
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AleI CACNNNNGTG 1 cut(s) 530
Alw21I GWGCWC 4 cut(s) 92, 364, 420, 705
Alw26I GTCTC 1 cut(s) 716
Alw44I GTGCAC 1 cut(s) 360
AlwI GGATC 2 cut(s) 1220, 1562
AoxI GGCC 2 cut(s) 784, 986
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 48, 71, 440
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 1 cut(s) 1242
AsuHPI GGTGA 6 cut(s) 26, 106, 398, 880, 1085, 1546
AsuII TTCGAA 1 cut(s) 946
BaeGI GKGCMC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 4 cut(s) 92, 364, 420, 705
BbvI GCAGC 1 cut(s) 40
BccI CCATC 5 cut(s) 397, 472, 481, 620, 1093
BceAI ACGGC 2 cut(s) 621, 799
BciVI GTATCC 1 cut(s) 185
BclI TGATCA 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 716
BfaI CTAG 3 cut(s) 1143, 1380, 1419
BfmI CTRYAG 1 cut(s) 1213
BfuAI ACCTGC 1 cut(s) 740
BfuI GTATCC 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 792
BisI GCNGC 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 30
BmsI GCATC 6 cut(s) 51, 384, 591, 1086, 1267, 1479
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 1041
Bpu1102I GCTNAGC 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 946
BsaAI YACGTR 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 716
BsaJI CCNNGG 1 cut(s) 790
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 656, 1102
Bse1I ACTGG 4 cut(s) 297, 1007, 1295, 1481
Bse3DI GCAATG 2 cut(s) 1116, 1390
BseDI CCNNGG 1 cut(s) 790
BseGI GGATG 3 cut(s) 646, 1165, 1494
BseLI CCNNNNNNNGG 3 cut(s) 349, 656, 1102
BseMI GCAATG 2 cut(s) 1116, 1390
BseMII CTCAG 2 cut(s) 711, 903
BseNI ACTGG 4 cut(s) 297, 1007, 1295, 1481
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 1284
BshFI GGCC 2 cut(s) 786, 988
BsiHKAI GWGCWC 4 cut(s) 92, 364, 420, 705
BsiSI CCGG 2 cut(s) 183, 557
BslFI GGGAC 1 cut(s) 1301
BslI CCNNNNNNNGG 3 cut(s) 349, 656, 1102
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 1301
BsmI GAATGC 3 cut(s) 174, 305, 344
BsnI GGCC 2 cut(s) 786, 988
Bso31I GGTCTC 1 cut(s) 716
Bsp119I TTCGAA 1 cut(s) 946
Bsp1286I GDGCHC 4 cut(s) 92, 364, 420, 705
Bsp143I GATC 3 cut(s) 534, 1225, 1567
Bsp1720I GCTNAGC 1 cut(s) 578
BspACI CCGC 1 cut(s) 684
BspANI GGCC 2 cut(s) 786, 988
BspCNI CTCAG 2 cut(s) 712, 904
BspHI TCATGA 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 2 cut(s) 1220, 1562
BspQI GCTCTTC 1 cut(s) 1429
BspT104I TTCGAA 1 cut(s) 946
BspTNI GGTCTC 1 cut(s) 716
BsrDI GCAATG 2 cut(s) 1116, 1390
BsrI ACTGG 4 cut(s) 297, 1007, 1295, 1481
BssECI CCNNGG 1 cut(s) 790
BssMI GATC 3 cut(s) 534, 1225, 1567
BssNAI GTATAC 1 cut(s) 1012
BssT1I CCWWGG 1 cut(s) 790
Bst1107I GTATAC 1 cut(s) 1012
Bst4CI ACNGT 3 cut(s) 279, 1009, 1178
Bst6I CTCTTC 2 cut(s) 384, 1429
BstAPI GCANNNNNTGC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 946
BstC8I GCNNGC 3 cut(s) 195, 272, 1282
BstDEI CTNAG 5 cut(s) 53, 578, 720, 912, 1236
BstF5I GGATG 3 cut(s) 646, 1165, 1494
BstHHI GCGC 1 cut(s) 1242
BstKTI GATC 3 cut(s) 537, 1228, 1570
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 3 cut(s) 534, 1225, 1567
BstMWI GCNNNNNNNGC 4 cut(s) 169, 249, 309, 792
BstNSI RCATGY 5 cut(s) 413, 455, 533, 955, 1127
BstSFI CTRYAG 1 cut(s) 1213
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 222
BstZ17I GTATAC 1 cut(s) 1012
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 786, 988
BtsCI GGATG 3 cut(s) 646, 1165, 1494
BtsIMutI CAGTG 3 cut(s) 290, 537, 1488
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 3 cut(s) 195, 272, 1282
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 1242
CseI GACGC 1 cut(s) 735
Csp6I GTAC 1 cut(s) 781
CviAII CATG 8 cut(s) 11, 158, 410, 452, 530, 715, 952, 1124
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 5 cut(s) 53, 578, 720, 912, 1236
DpnI GATC 3 cut(s) 536, 1227, 1569
DpnII GATC 3 cut(s) 534, 1225, 1567
EaeI YGGCCR 1 cut(s) 784
Eam1104I CTCTTC 2 cut(s) 384, 1429
EarI CTCTTC 2 cut(s) 384, 1429
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 790
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 716
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 5 cut(s) 1011, 1084, 1326, 1383, 1422
EcoICRI GAGCTC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 790
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 790
FaeI CATG 8 cut(s) 14, 161, 413, 455, 533, 718, 955, 1127
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FaqI GGGAC 1 cut(s) 1301
FatI CATG 8 cut(s) 10, 157, 409, 451, 529, 714, 951, 1123
FbaI TGATCA 1 cut(s) 534
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 3 cut(s) 633, 1172, 1501
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 3 cut(s) 1143, 1380, 1419
GlaI GCGC 1 cut(s) 1241
GluI GCNGC 1 cut(s) 29
GsaI CCCAGC 1 cut(s) 1288
GsuI CTGGAG 1 cut(s) 1041
HaeIII GGCC 2 cut(s) 786, 988
HapII CCGG 2 cut(s) 183, 557
HgaI GACGC 1 cut(s) 735
HhaI GCGC 1 cut(s) 1242
Hin1II CATG 8 cut(s) 14, 161, 413, 455, 533, 718, 955, 1127
Hin6I GCGC 1 cut(s) 1240
HinP1I GCGC 1 cut(s) 1240
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 6 cut(s) 195, 458, 827, 1065, 1168, 1316
HinfI GANTC 6 cut(s) 101, 522, 619, 922, 1054, 1331
HpaII CCGG 2 cut(s) 183, 557
HphI GGTGA 6 cut(s) 26, 106, 398, 880, 1085, 1546
Hpy166II GTNNAC 5 cut(s) 362, 1000, 1012, 1093, 1554
Hpy188I TCNGA 5 cut(s) 721, 961, 1441, 1522, 1567
Hpy188III TCNNGA 5 cut(s) 158, 616, 623, 1058, 1136
Hpy8I GTNNAC 5 cut(s) 362, 1000, 1012, 1093, 1554
HpyCH4III ACNGT 3 cut(s) 279, 1009, 1178
HpyCH4IV ACGT 3 cut(s) 81, 1562, 1577
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 249, 309, 792
HpyF3I CTNAG 5 cut(s) 53, 578, 720, 912, 1236
HpySE526I ACGT 3 cut(s) 81, 1562, 1577
Hsp92II CATG 8 cut(s) 14, 161, 413, 455, 533, 718, 955, 1127
HspAI GCGC 1 cut(s) 1240
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 3 cut(s) 534, 1225, 1567
LguI GCTCTTC 1 cut(s) 1429
LmnI GCTCC 8 cut(s) 25, 95, 190, 559, 708, 1358, 1373, 1412
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 6 cut(s) 51, 384, 591, 1086, 1267, 1479
MaeI CTAG 3 cut(s) 1143, 1380, 1419
MaeII ACGT 3 cut(s) 81, 1562, 1577
MaeIII GTNAC 2 cut(s) 464, 1343
MalI GATC 3 cut(s) 536, 1227, 1569
MboI GATC 3 cut(s) 534, 1225, 1567
MfeI CAATTG 1 cut(s) 872
MhlI GDGCHC 4 cut(s) 92, 364, 420, 705
MluCI AATT 9 cut(s) 48, 71, 76, 317, 440, 571, 872, 1049, 1154
MlyI GAGTC 2 cut(s) 1048, 1340
MmeI TCCRAC 3 cut(s) 129, 205, 1419
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 3 cut(s) 75, 728, 806
MslI CAYNNNNRTG 4 cut(s) 119, 516, 530, 1128
MspI CCGG 2 cut(s) 183, 557
MunI CAATTG 1 cut(s) 872
Mva1269I GAATGC 3 cut(s) 174, 305, 344
MwoI GCNNNNNNNGC 4 cut(s) 169, 249, 309, 792
NdeII GATC 3 cut(s) 534, 1225, 1567
NlaIII CATG 8 cut(s) 14, 161, 413, 455, 533, 718, 955, 1127
NmuCI GTSAC 1 cut(s) 1343
NspI RCATGY 5 cut(s) 413, 455, 533, 955, 1127
NspV TTCGAA 1 cut(s) 946
OliI CACNNNNGTG 1 cut(s) 530
PagI TCATGA 1 cut(s) 157
PciI ACATGT 4 cut(s) 409, 451, 529, 1123
PciSI GCTCTTC 1 cut(s) 1429
PctI GAATGC 3 cut(s) 174, 305, 344
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 4 cut(s) 101, 522, 619, 922
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 2 cut(s) 1048, 1339
PpsI GAGTC 2 cut(s) 1048, 1339
Ppu21I YACGTR 1 cut(s) 82
PscI ACATGT 4 cut(s) 409, 451, 529, 1123
Psp124BI GAGCTC 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 1284
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
RseI CAYNNNNRTG 4 cut(s) 119, 516, 530, 1128
SacI GAGCTC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 1429
SaqAI TTAA 3 cut(s) 75, 728, 806
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 534, 1225, 1567
SchI GAGTC 2 cut(s) 1048, 1340
SduI GDGCHC 4 cut(s) 92, 364, 420, 705
SfaNI GCATC 6 cut(s) 51, 384, 591, 1086, 1267, 1479
SfcI CTRYAG 1 cut(s) 1213
SfuI TTCGAA 1 cut(s) 946
SmiMI CAYNNNNRTG 4 cut(s) 119, 516, 530, 1128
Sse9I AATT 9 cut(s) 48, 71, 76, 317, 440, 571, 872, 1049, 1154
SsiI CCGC 1 cut(s) 684
SspMI CTAG 3 cut(s) 1143, 1380, 1419
SstI GAGCTC 1 cut(s) 420
StyI CCWWGG 1 cut(s) 790
TaaI ACNGT 3 cut(s) 279, 1009, 1178
TaiI ACGT 3 cut(s) 84, 1565, 1580
TaqI TCGA 6 cut(s) 59, 445, 925, 946, 1024, 1128
TasI AATT 9 cut(s) 48, 71, 76, 317, 440, 571, 872, 1049, 1154
TfiI GAWTC 4 cut(s) 101, 522, 619, 922
Tru1I TTAA 3 cut(s) 75, 728, 806
Tru9I TTAA 3 cut(s) 75, 728, 806
TscAI CASTG 3 cut(s) 297, 544, 1488
TseFI GTSAC 1 cut(s) 1343
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 1343
TspDTI ATGAA 7 cut(s) 17, 146, 147, 228, 950, 1401, 1515
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 297, 544, 1488
VneI GTGCAC 1 cut(s) 360
XapI RAATTY 3 cut(s) 48, 71, 440
XceI RCATGY 5 cut(s) 413, 455, 533, 955, 1127
XcmI CCANNNNNNNNNTGG 3 cut(s) 937, 981, 1065
XmiI GTMKAC 1 cut(s) 1011
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 3 cut(s) 1143, 1380, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.