Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006014.1

Orthogroup ID

OG0000106

Physical Location & Seq

Genomic Coordinates Forward (+)

129796 .. 133579

Gene Structure 3784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006014.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgctaggcgccgctcctagactagtcgaggcagatgactaccttctagcgtctagacaggcgcccagagagatgtttagaacactgtcactagaccaaatggtaccggagttgttgtcaaagcaaaaggtgctttgtttggaagatgatgaccagaacatgtgcctgaagcaaaacgtggaatgccacatcttccttattttgaattatgtttacttgatgggaatgcggcaaatggattgcgatcagcttgtggagtttgtccatcagatgactgtgtctgtcagatgcggaccaactcaccaacgttctaagttagatggaagggctctcaagtgtgtctttgtcgggtatgggactcagcagaaaggatacaagtgttatcatcctccttctcaaagattttatgtcaccatagatgtgacattcagtgaggatacatgttattttccaccttctacgacttatagtcaaggggagcagggtattttttatgaaggacaatgccaaacagggccaacgatcaatcgctttatctcaaacgatcgatcggttactgaagaggaagtgtccaatgccccagaaaccaacgacactcctggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

201

Amino Acids

22.94

Weight (kDa)

4.98

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20980 AT3G21000
fragaria_vesca	FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica	MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica	Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis	pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis	RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata	RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora	Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa	Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha	Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana	Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	103
AccB1I	GGYRCC	3 cut(s)	8, 61, 103
AccBSI	CCGCTC	1 cut(s)	14
AciI	CCGC	3 cut(s)	12, 229, 291
AclI	AACGTT	1 cut(s)	307
AcuI	CTGAAG	2 cut(s)	188, 579
AcyI	GRCGYC	2 cut(s)	9, 62
AfaI	GTAC	1 cut(s)	105
AflIII	ACRYGT	2 cut(s)	159, 440
AgsI	TTSAA	1 cut(s)	205
AhdI	GACNNNNNGTC	1 cut(s)	468
AhlI	ACTAGT	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
AoxI	GGCC	1 cut(s)	515
Asp718I	GGTACC	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	11, 64
AspS9I	GGNCC	2 cut(s)	293, 515
AsuHPI	GGTGA	2 cut(s)	293, 403
AvaII	GGWCC	1 cut(s)	293
BaeI	ACNNNNGTAYC	4 cut(s)	95, 128, 364, 397
BanI	GGYRCC	3 cut(s)	8, 61, 103
BanII	GRGCYC	1 cut(s)	331
BccI	CCATC	3 cut(s)	214, 273, 314
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	2 cut(s)	365, 430
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	6 cut(s)	5, 18, 23, 47, 54, 92
BfoI	RGCGCY	2 cut(s)	12, 65
BfuI	GTATCC	2 cut(s)	365, 430
BisI	GCNGC	2 cut(s)	12, 230
BlsI	GCNGC	2 cut(s)	13, 231
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	293
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	293, 515
BmiI	GGNNCC	3 cut(s)	10, 63, 105
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	9, 62
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	547
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	374
Bsh1285I	CGRYCG	2 cut(s)	547, 551
BshFI	GGCC	1 cut(s)	517
BshNI	GGYRCC	3 cut(s)	8, 61, 103
BshVI	ATCGAT	1 cut(s)	547
BsiEI	CGRYCG	2 cut(s)	547, 551
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	2 cut(s)	188, 231
BsnI	GGCC	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	244, 522, 544, 548
BspACI	CCGC	3 cut(s)	12, 229, 291
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	10, 63, 105
BspT107I	GGYRCC	3 cut(s)	8, 61, 103
BsrBI	CCGCTC	1 cut(s)	14
BssMI	GATC	4 cut(s)	244, 522, 544, 548
BssNI	GRCGYC	2 cut(s)	9, 62
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	87, 277
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	2 cut(s)	9, 62
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	312, 360
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	2 cut(s)	12, 65
BstHHI	GCGC	2 cut(s)	11, 64
BstKTI	GATC	4 cut(s)	247, 525, 547, 551
BstMBI	GATC	4 cut(s)	244, 522, 544, 548
BstMCI	CGRYCG	2 cut(s)	547, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	2 cut(s)	163, 444
BstSCI	CCNGG	1 cut(s)	598
Bsu15I	ATCGAT	1 cut(s)	547
BsuI	GTATCC	2 cut(s)	365, 430
BsuRI	GGCC	1 cut(s)	517
BsuTUI	ATCGAT	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	83, 436
CfoI	GCGC	2 cut(s)	11, 64
Cfr13I	GGNCC	2 cut(s)	293, 515
ClaI	ATCGAT	1 cut(s)	547
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	160, 441
CviJI	RGCY	3 cut(s)	250, 329, 517
CviKI_1	RGCY	3 cut(s)	250, 329, 517
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	312, 360
DinI	GGCGCC	2 cut(s)	10, 63
DpnI	GATC	4 cut(s)	246, 524, 546, 550
DpnII	GATC	4 cut(s)	244, 522, 544, 548
DriI	GACNNNNNGTC	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	188, 579
EcoRII	CCWGG	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	331
EgeI	GGCGCC	2 cut(s)	10, 63
EheI	GGCGCC	2 cut(s)	10, 63
FaeI	CATG	2 cut(s)	163, 444
FaiI	YATR	8 cut(s)	161, 210, 354, 408, 416, 442, 468, 495
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	159, 440
Fnu4HI	GCNGC	2 cut(s)	12, 230
FokI	GGATG	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	12, 230
FspBI	CTAG	6 cut(s)	5, 18, 23, 47, 54, 92
GlaI	GCGC	2 cut(s)	10, 63
GluI	GCNGC	2 cut(s)	12, 230
HaeII	RGCGCY	2 cut(s)	12, 65
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	2 cut(s)	11, 64
Hin1I	GRCGYC	2 cut(s)	9, 62
Hin1II	CATG	2 cut(s)	163, 444
Hin6I	GCGC	2 cut(s)	9, 62
HinP1I	GCGC	2 cut(s)	9, 62
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	293, 403
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	270, 287
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	5 cut(s)	53, 318, 402, 465, 491
HpyCH4III	ACNGT	2 cut(s)	87, 277
HpyCH4IV	ACGT	2 cut(s)	177, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	2 cut(s)	312, 360
HpySE526I	ACGT	2 cut(s)	177, 307
Hsp92I	GRCGYC	2 cut(s)	9, 62
Hsp92II	CATG	2 cut(s)	163, 444
HspAI	GCGC	2 cut(s)	9, 62
KasI	GGCGCC	2 cut(s)	8, 61
KpnI	GGTACC	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	244, 522, 544, 548
LmnI	GCTCC	2 cut(s)	19, 478
LpnPI	CCDG	9 cut(s)	44, 79, 120, 167, 179, 467, 498, 585, 594
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	6 cut(s)	5, 18, 23, 47, 54, 92
MaeII	ACGT	2 cut(s)	177, 307
MaeIII	GTNAC	4 cut(s)	87, 409, 421, 553
MalI	GATC	4 cut(s)	246, 524, 546, 550
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	4 cut(s)	244, 522, 544, 548
MboII	GAAGA	3 cut(s)	155, 184, 572
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	1 cut(s)	205
Mly113I	GGCGCC	2 cut(s)	9, 62
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	4 cut(s)	22, 399, 427, 556
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	600
Mva1269I	GAATGC	2 cut(s)	188, 231
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	1 cut(s)	130
NarI	GGCGCC	2 cut(s)	9, 62
NdeII	GATC	4 cut(s)	244, 522, 544, 548
NlaIII	CATG	2 cut(s)	163, 444
NlaIV	GGNNCC	3 cut(s)	10, 63, 105
NmuCI	GTSAC	3 cut(s)	87, 409, 421
NspI	RCATGY	2 cut(s)	163, 444
PciI	ACATGT	2 cut(s)	159, 440
PctI	GAATGC	2 cut(s)	188, 231
PflFI	GACNNNGTC	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	13, 231
Ple19I	CGATCG	2 cut(s)	547, 551
PleI	GAGTC	1 cut(s)	352
PluTI	GGCGCC	2 cut(s)	12, 65
PpsI	GAGTC	1 cut(s)	352
PscI	ACATGT	2 cut(s)	159, 440
Psp1406I	AACGTT	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	10, 63, 105
PspPI	GGNCC	2 cut(s)	293, 515
PsyI	GACNNNGTC	1 cut(s)	277
PvuI	CGATCG	2 cut(s)	547, 551
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	419
SatI	GCNGC	2 cut(s)	12, 230
Sau3AI	GATC	4 cut(s)	244, 522, 544, 548
Sau96I	GGNCC	2 cut(s)	293, 515
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	6 cut(s)	45, 132, 180, 252, 310, 457
SfaNI	GCATC	1 cut(s)	278
SfoI	GGCGCC	2 cut(s)	10, 63
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	12, 229, 291
SspDI	GGCGCC	2 cut(s)	8, 61
SspMI	CTAG	6 cut(s)	5, 18, 23, 47, 54, 92
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	87, 277
TaiI	ACGT	2 cut(s)	180, 310
TaqI	TCGA	2 cut(s)	27, 547
TasI	AATT	1 cut(s)	205
TauI	GCSGC	2 cut(s)	14, 232
TscAI	CASTG	2 cut(s)	90, 436
TseFI	GTSAC	3 cut(s)	87, 409, 421
Tsp45I	GTSAC	3 cut(s)	87, 409, 421
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	90, 436
Tth111I	GACNNNGTC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	2 cut(s)	163, 444
XspI	CTAG	6 cut(s)	5, 18, 23, 47, 54, 92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.