gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_retrovirus | PF25597 | 133 - 169 | 9.8e-10 | Retroviral polymerase SH3-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 227 |
| AccII | CGCG | 2 cut(s) | 231, 387 |
| AciI | CCGC | 6 cut(s) | 67, 225, 288, 385, 476, 521 |
| AcsI | RAATTY | 2 cut(s) | 107, 434 |
| AfaI | GTAC | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 346 |
| AgsI | TTSAA | 3 cut(s) | 197, 221, 245 |
| Ama87I | CYCGRG | 1 cut(s) | 444 |
| AoxI | GGCC | 1 cut(s) | 489 |
| ApoI | RAATTY | 2 cut(s) | 107, 434 |
| AseI | ATTAAT | 1 cut(s) | 29 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 279 |
| AspLEI | GCGC | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 2 cut(s) | 116, 510 |
| AsuII | TTCGAA | 1 cut(s) | 359 |
| AvaI | CYCGRG | 1 cut(s) | 444 |
| BanII | GRGCYC | 1 cut(s) | 451 |
| BbsI | GAAGAC | 1 cut(s) | 314 |
| BccI | CCATC | 4 cut(s) | 83, 258, 336, 376 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 448, 482 |
| BclI | TGATCA | 1 cut(s) | 136 |
| BfaI | CTAG | 1 cut(s) | 532 |
| BmeT110I | CYCGRG | 1 cut(s) | 444 |
| BpiI | GAAGAC | 1 cut(s) | 314 |
| Bpu14I | TTCGAA | 1 cut(s) | 359 |
| Bsa29I | ATCGAT | 1 cut(s) | 505 |
| BsaJI | CCNNGG | 1 cut(s) | 443 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 346 |
| BseCI | ATCGAT | 1 cut(s) | 505 |
| BseDI | CCNNGG | 1 cut(s) | 443 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 346 |
| Bsh1236I | CGCG | 2 cut(s) | 231, 387 |
| BshFI | GGCC | 1 cut(s) | 491 |
| BshVI | ATCGAT | 1 cut(s) | 505 |
| BsiHKCI | CYCGRG | 1 cut(s) | 444 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 346 |
| BsmI | GAATGC | 1 cut(s) | 84 |
| BsnI | GGCC | 1 cut(s) | 491 |
| BsoBI | CYCGRG | 1 cut(s) | 444 |
| Bsp119I | TTCGAA | 1 cut(s) | 359 |
| Bsp1286I | GDGCHC | 1 cut(s) | 451 |
| Bsp143I | GATC | 2 cut(s) | 136, 506 |
| BspACI | CCGC | 6 cut(s) | 67, 225, 288, 385, 476, 521 |
| BspANI | GGCC | 1 cut(s) | 491 |
| BspDI | ATCGAT | 1 cut(s) | 505 |
| BspFNI | CGCG | 2 cut(s) | 231, 387 |
| BspT104I | TTCGAA | 1 cut(s) | 359 |
| BsrBI | CCGCTC | 1 cut(s) | 227 |
| BssECI | CCNNGG | 1 cut(s) | 443 |
| BssMI | GATC | 2 cut(s) | 136, 506 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstBI | TTCGAA | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 1 cut(s) | 229 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstFNI | CGCG | 2 cut(s) | 231, 387 |
| BstHHI | GCGC | 1 cut(s) | 233 |
| BstKTI | GATC | 2 cut(s) | 139, 509 |
| BstMBI | GATC | 2 cut(s) | 136, 506 |
| BstUI | CGCG | 2 cut(s) | 231, 387 |
| BstV2I | GAAGAC | 1 cut(s) | 314 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 185 |
| Bsu15I | ATCGAT | 1 cut(s) | 505 |
| BsuRI | GGCC | 1 cut(s) | 491 |
| BsuTUI | ATCGAT | 1 cut(s) | 505 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| Cac8I | GCNNGC | 1 cut(s) | 229 |
| CfoI | GCGC | 1 cut(s) | 233 |
| ClaI | ATCGAT | 1 cut(s) | 505 |
| CseI | GACGC | 1 cut(s) | 376 |
| Csp6I | GTAC | 1 cut(s) | 90 |
| CviAII | CATG | 2 cut(s) | 140, 479 |
| CviJI | RGCY | 2 cut(s) | 449, 491 |
| CviKI_1 | RGCY | 2 cut(s) | 449, 491 |
| CviQI | GTAC | 1 cut(s) | 90 |
| DpnI | GATC | 2 cut(s) | 138, 508 |
| DpnII | GATC | 2 cut(s) | 136, 506 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco147I | AGGCCT | 1 cut(s) | 491 |
| Eco24I | GRGCYC | 1 cut(s) | 451 |
| Eco88I | CYCGRG | 1 cut(s) | 444 |
| EcoT22I | ATGCAT | 1 cut(s) | 86 |
| EcoT38I | GRGCYC | 1 cut(s) | 451 |
| FaeI | CATG | 2 cut(s) | 143, 482 |
| FatI | CATG | 2 cut(s) | 139, 478 |
| FauNDI | CATATG | 1 cut(s) | 406 |
| FbaI | TGATCA | 1 cut(s) | 136 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 1 cut(s) | 451 |
| FspBI | CTAG | 1 cut(s) | 532 |
| GlaI | GCGC | 1 cut(s) | 232 |
| HaeIII | GGCC | 1 cut(s) | 491 |
| HgaI | GACGC | 1 cut(s) | 376 |
| HhaI | GCGC | 1 cut(s) | 233 |
| Hin1II | CATG | 2 cut(s) | 143, 482 |
| Hin6I | GCGC | 1 cut(s) | 231 |
| HinP1I | GCGC | 1 cut(s) | 231 |
| HphI | GGTGA | 2 cut(s) | 116, 510 |
| Hpy188I | TCNGA | 2 cut(s) | 16, 136 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 510 |
| HpyAV | CCTTC | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 2 cut(s) | 84, 459 |
| Hsp92II | CATG | 2 cut(s) | 143, 482 |
| HspAI | GCGC | 1 cut(s) | 231 |
| Ksp22I | TGATCA | 1 cut(s) | 136 |
| Kzo9I | GATC | 2 cut(s) | 136, 506 |
| LpnPI | CCDG | 1 cut(s) | 386 |
| MaeI | CTAG | 1 cut(s) | 532 |
| MaeIII | GTNAC | 2 cut(s) | 52, 418 |
| MalI | GATC | 2 cut(s) | 138, 508 |
| MbiI | CCGCTC | 1 cut(s) | 227 |
| MboI | GATC | 2 cut(s) | 136, 506 |
| MboII | GAAGA | 4 cut(s) | 110, 206, 245, 314 |
| MhlI | GDGCHC | 1 cut(s) | 451 |
| MluCI | AATT | 5 cut(s) | 26, 30, 62, 107, 434 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| MnlI | CCTC | 3 cut(s) | 340, 424, 453 |
| Mph1103I | ATGCAT | 1 cut(s) | 86 |
| MroXI | GAANNNNTTC | 1 cut(s) | 279 |
| MseI | TTAA | 2 cut(s) | 29, 33 |
| Mva1269I | GAATGC | 1 cut(s) | 84 |
| MvnI | CGCG | 2 cut(s) | 231, 387 |
| NdeI | CATATG | 1 cut(s) | 406 |
| NdeII | GATC | 2 cut(s) | 136, 506 |
| NlaIII | CATG | 2 cut(s) | 143, 482 |
| NmuCI | GTSAC | 2 cut(s) | 52, 418 |
| NsiI | ATGCAT | 1 cut(s) | 86 |
| NspV | TTCGAA | 1 cut(s) | 359 |
| PacI | TTAATTAA | 1 cut(s) | 33 |
| PceI | AGGCCT | 1 cut(s) | 491 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 235, 451 |
| PctI | GAATGC | 1 cut(s) | 84 |
| PdmI | GAANNNNTTC | 1 cut(s) | 279 |
| PshBI | ATTAAT | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 91 |
| RsaNI | GTAC | 1 cut(s) | 90 |
| SaqAI | TTAA | 2 cut(s) | 29, 33 |
| Sau3AI | GATC | 2 cut(s) | 136, 506 |
| SduI | GDGCHC | 1 cut(s) | 451 |
| SetI | ASST | 2 cut(s) | 351, 416 |
| SfuI | TTCGAA | 1 cut(s) | 359 |
| Sse9I | AATT | 5 cut(s) | 26, 30, 62, 107, 434 |
| SseBI | AGGCCT | 1 cut(s) | 491 |
| SsiI | CCGC | 6 cut(s) | 67, 225, 288, 385, 476, 521 |
| SspMI | CTAG | 1 cut(s) | 532 |
| StuI | AGGCCT | 1 cut(s) | 491 |
| TaqI | TCGA | 3 cut(s) | 359, 505, 511 |
| TasI | AATT | 5 cut(s) | 26, 30, 62, 107, 434 |
| Tru1I | TTAA | 2 cut(s) | 29, 33 |
| Tru9I | TTAA | 2 cut(s) | 29, 33 |
| TseFI | GTSAC | 2 cut(s) | 52, 418 |
| Tsp45I | GTSAC | 2 cut(s) | 52, 418 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VspI | ATTAAT | 1 cut(s) | 29 |
| XapI | RAATTY | 2 cut(s) | 107, 434 |
| XmnI | GAANNNNTTC | 1 cut(s) | 279 |
| XspI | CTAG | 1 cut(s) | 532 |
| Zsp2I | ATGCAT | 1 cut(s) | 86 |