FvH4_6g37042
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000106
Physical Location & Seq
Reverse (-)
29104575 .. 29107191
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37042.t1

Sequence Viewer

Length: 924 bp
ATGTGCCTTAGCCTCAGCGCCAAGAACAAGATAGGACTGATTGATGGTACAATCAAACCACCTCCACGCACCGATCCAAGGTTCCCTATGTGGAAGTGCTGCAACGACATGGTATTGTCATGGATCGTTCATTCGATTCAACCAAACATCGCGCGTGGAGTGATCTTCTCAGATACGGCATTTGGGGTGTGGAGAGATCTCCATGATTTATTCTCTCAAGGAGATGATTCAAGGATTTATCAAATTCGGCAAGAGATCGCCGAATGTCGCCAAGGCCAGCAATCTGCTTCTATCTATTACACTAAACTCAAAGCCCTTTGGGATGAATTATCCTCTTACCAGGAACCTCTTGCTTGTAGTTGTGATGCTATGCAGATCTTGTTTGACCGGGAGGAGAAAGAGAGAGTCATGCAGTTCTTCATGGGGTTGAATGAATCTTACTCAACTATTCGCGGGTCAATCCTGATGATGAGTCCACTTCCAAATACAAGGAAGGTTCATGGTTTGATCCTTCAACATGAGAGGCAGATGGAGGCGGCAGCTCGTCGAGATATCCCACAAACATCTCATGCTATGCAGGCTGCGAGGACATCAAATCCACCAAAGTCCTCCTTCTCCCCCAAACCATTGAAGTGCACATATTGTGAGGAAGACACTCATTTGGTGGATCGCTGCTTTTACCTGAAAGGGTTTCCAGTGGGCCACAAATGGCATGGCAAGAACGTGAAGCCCAAAAACAAAAGAGGATCAGCCCACAACATTGAGTTGAAGAAGGAACCCACAAATGAAAGCCCAACCCTCACAGCTGATGAATACAAGCAGATCATGGCCATGTTGCACGAAAAGAACGGTAATAATCAACCATTCGCAAATGCGACAGGACGTGTATACGAAGAGGACGATTGGCCTGGGCAAGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

308

Amino Acids

35.14

Weight (kDa)

8.3

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 888
AccII CGCG 3 cut(s) 152, 154, 453
AciI CCGC 2 cut(s) 453, 536
AclWI GGATC 5 cut(s) 68, 131, 502, 675, 754
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 883
AgsI TTSAA 6 cut(s) 140, 231, 430, 515, 631, 769
AjiI CACGTC 1 cut(s) 884
AjnI CCWGG 2 cut(s) 339, 907
AluBI AGCT 2 cut(s) 542, 806
AluI AGCT 2 cut(s) 542, 806
Alw21I GWGCWC 1 cut(s) 638
Alw44I GTGCAC 1 cut(s) 634
AlwI GGATC 5 cut(s) 68, 131, 502, 675, 754
AoxI GGCC 4 cut(s) 274, 700, 828, 905
ApaLI GTGCAC 1 cut(s) 634
ApeKI GCWGC 4 cut(s) 99, 539, 581, 672
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 2 cut(s) 20, 154
AspS9I GGNCC 1 cut(s) 700
AsuC2I CCSGG 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 638
BalI TGGCCA 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 638
BbvCI CCTCAGC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 86, 551, 568, 659
BccI CCATC 2 cut(s) 38, 523
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 2 cut(s) 341, 909
BcnI CCSGG 1 cut(s) 389
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 2 cut(s) 196, 375
BisI GCNGC 5 cut(s) 100, 537, 540, 582, 673
BlsI GCNGC 5 cut(s) 101, 538, 541, 583, 674
Bme1390I CCNGG 3 cut(s) 341, 389, 909
BmgBI CACGTC 1 cut(s) 884
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 3 cut(s) 83, 345, 777
BmrFI CCNGG 3 cut(s) 341, 389, 909
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 657
Bpu10I CCTNAGC 2 cut(s) 8, 14
BpuEI CTTGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 77, 271, 908
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 695
BseBI CCWGG 2 cut(s) 341, 909
BseDI CCNNGG 3 cut(s) 77, 271, 908
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 28, 183
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 407
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 4 cut(s) 86, 551, 568, 659
Bsh1236I CGCG 3 cut(s) 152, 154, 453
BshFI GGCC 4 cut(s) 276, 702, 830, 907
BsiHKAI GWGCWC 1 cut(s) 638
BsiSI CCGG 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 78
BsnI GGCC 4 cut(s) 276, 702, 830, 907
Bsp1286I GDGCHC 1 cut(s) 638
BspACI CCGC 2 cut(s) 453, 536
BspANI GGCC 4 cut(s) 276, 702, 830, 907
BspCNI CTCAG 2 cut(s) 27, 182
BspFNI CGCG 3 cut(s) 152, 154, 453
BspLI GGNNCC 3 cut(s) 83, 345, 777
BspPI GGATC 5 cut(s) 68, 131, 502, 675, 754
BsrI ACTGG 1 cut(s) 695
BssECI CCNNGG 3 cut(s) 77, 271, 908
BssNAI GTATAC 1 cut(s) 889
BssT1I CCWWGG 2 cut(s) 77, 271
Bst1107I GTATAC 1 cut(s) 889
Bst2UI CCWGG 2 cut(s) 341, 909
Bst4CI ACNGT 1 cut(s) 851
Bst6I CTCTTC 1 cut(s) 888
BstC8I GCNNGC 3 cut(s) 278, 579, 915
BstDEI CTNAG 3 cut(s) 8, 14, 169
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 3 cut(s) 152, 154, 453
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 154
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNI CCWGG 2 cut(s) 341, 909
BstSCI CCNGG 3 cut(s) 339, 387, 907
BstSLI GKGCMC 1 cut(s) 638
BstUI CGCG 3 cut(s) 152, 154, 453
BstV1I GCAGC 4 cut(s) 86, 551, 568, 659
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 2 cut(s) 196, 375
BstYI RGATCY 2 cut(s) 196, 375
BstZ17I GTATAC 1 cut(s) 889
BsuRI GGCC 4 cut(s) 276, 702, 830, 907
BtgZI GCGATG 1 cut(s) 133
BtrI CACGTC 1 cut(s) 884
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 702
Cac8I GCNNGC 3 cut(s) 278, 579, 915
CfoI GCGC 2 cut(s) 20, 154
Cfr13I GGNCC 1 cut(s) 700
Csp6I GTAC 1 cut(s) 48
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 3 cut(s) 8, 14, 169
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
Eco130I CCWWGG 2 cut(s) 77, 271
Eco32I GATATC 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 339, 907
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 2 cut(s) 77, 271
ErhI CCWWGG 2 cut(s) 77, 271
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FauI CCCGC 1 cut(s) 446
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 5 cut(s) 100, 537, 540, 582, 673
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 5 cut(s) 100, 537, 540, 582, 673
GlaI GCGC 2 cut(s) 19, 153
GluI GCNGC 5 cut(s) 100, 537, 540, 582, 673
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 276, 702, 830, 907
HapII CCGG 1 cut(s) 388
HhaI GCGC 2 cut(s) 20, 154
Hin6I GCGC 2 cut(s) 18, 152
HinP1I GCGC 2 cut(s) 18, 152
HinfI GANTC 5 cut(s) 136, 227, 405, 434, 472
HpaII CCGG 1 cut(s) 388
Hpy166II GTNNAC 3 cut(s) 476, 636, 889
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 463, 548
Hpy8I GTNNAC 3 cut(s) 476, 636, 889
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 4 cut(s) 487, 521, 622, 766
HpyCH4III ACNGT 1 cut(s) 851
HpyCH4IV ACGT 2 cut(s) 723, 883
HpyCH4V TGCA 6 cut(s) 102, 373, 412, 577, 636, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpyF3I CTNAG 3 cut(s) 8, 14, 169
HpySE526I ACGT 2 cut(s) 723, 883
HspAI GCGC 2 cut(s) 18, 152
Lsp1109I GCAGC 4 cut(s) 86, 551, 568, 659
LweI GCATC 1 cut(s) 355
MaeII ACGT 2 cut(s) 723, 883
MboII GAAGA 5 cut(s) 157, 409, 662, 781, 905
MflI RGATCY 2 cut(s) 196, 375
MhlI GDGCHC 1 cut(s) 638
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 2 cut(s) 243, 326
MluNI TGGCCA 1 cut(s) 830
MlyI GAGTC 2 cut(s) 414, 481
Mox20I TGGCCA 1 cut(s) 830
MscI TGGCCA 1 cut(s) 830
MseI TTAA 1 cut(s) 922
MslI CAYNNNNRTG 2 cut(s) 631, 830
Msp20I TGGCCA 1 cut(s) 830
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 3 cut(s) 341, 389, 909
MvaI CCWGG 2 cut(s) 341, 909
MvnI CGCG 3 cut(s) 152, 154, 453
MwoI GCNNNNNNNGC 1 cut(s) 578
NciI CCSGG 1 cut(s) 389
NlaIV GGNNCC 3 cut(s) 83, 345, 777
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PfeI GAWTC 3 cut(s) 136, 227, 434
PkrI GCNGC 5 cut(s) 101, 538, 541, 583, 674
PleI GAGTC 2 cut(s) 413, 480
PpsI GAGTC 2 cut(s) 413, 480
Psp6I CCWGG 2 cut(s) 339, 907
PspGI CCWGG 2 cut(s) 339, 907
PspN4I GGNNCC 3 cut(s) 83, 345, 777
PspPI GGNCC 1 cut(s) 700
PsuI RGATCY 2 cut(s) 196, 375
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 2 cut(s) 631, 830
SaqAI TTAA 1 cut(s) 922
SatI GCNGC 5 cut(s) 100, 537, 540, 582, 673
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 2 cut(s) 414, 481
ScrFI CCNGG 3 cut(s) 341, 389, 909
SduI GDGCHC 1 cut(s) 638
SetI ASST 9 cut(s) 64, 83, 349, 498, 544, 684, 726, 808, 886
SfaNI GCATC 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 631, 830
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 243, 326
SsiI CCGC 2 cut(s) 453, 536
StyD4I CCNGG 3 cut(s) 339, 387, 907
StyI CCWWGG 2 cut(s) 77, 271
TaaI ACNGT 1 cut(s) 851
TaiI ACGT 2 cut(s) 726, 886
TaqI TCGA 2 cut(s) 134, 547
TasI AATT 2 cut(s) 243, 326
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 3 cut(s) 136, 227, 434
Tru1I TTAA 1 cut(s) 922
Tru9I TTAA 1 cut(s) 922
TscAI CASTG 1 cut(s) 702
TseI GCWGC 4 cut(s) 99, 539, 581, 672
TspDTI ATGAA 7 cut(s) 119, 339, 409, 447, 488, 801, 825
TspRI CASTG 1 cut(s) 702
VneI GTGCAC 1 cut(s) 634
XapI RAATTY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.