FvH4_2g20843

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000106
Physical Location & Seq
Reverse (-)
17403272 .. 17405389
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20843.t1

Sequence Viewer

Length: 1227 bp
ATGGCTGGCGATGATGAATCAAAGTCCCCCGAAATTGTGAAGGGATCAGAAACTTCCAAAGCTGCAGCACCATGGGAGAACTCTAATCACCCGCTCTTTCTCCACCATTCAGACCAACCCGGAGCTATGTTGGTTTCTGAACCTCTGGCGGAGGACAACTACTCAACCTGGGCATCGTCGATGATGATGGCCCTCCATATCAAGAACAAGACAGGATTTGTTGATGGAACCCTAAAAAGGCCAACTATCAACGCAGAAGAACGCCTTCAATGGGACAGATGCAATACTCTTGTCAAAACTTGGCTGATCTCTGCTATGTCAAAGAACATGTCCAAATCTGTAATCCATTGCAAGGAGGCTAGAGGTATGTGGCTAGAACTAGAGGATCGTTTTAATCAAACAAATTCTGTTGCCTTGTTTCACATAGAAAGCAGTATACACAAGTGTGAACAGGGAAGCAATTCGGTCACCACCTTCTACACAAACCTGAAAGGGATGTGGGATGAAAAAGATGCCTTATGCTCTTTTCCTTCCTGCACCTGTGAAGCAGCTGCTGAGATTAAGACATTCATGGAAACACAAAAGACAATGAAGTTTCTCATGGGTTTGAATGAGAGTTTCGAACAAACCCGTAGCAATATAATTGGAATGGATCCTTTACCAAGCTTGAGCAAGACATATGCCATTGTACTTCGACAGGAAAAGCAATCGGAAGTTGCAGCAGACAAGGCTACTGCGATGCCAGAATCTGCTGCCTTCTCCGTCAAGGGTTTAGGCCGAGAGACAAGTCTCACAGAGAAGGAAGCTGCTGACACCTCCGTCAATTCTATTCGGAGAGGAAATCGAGATGTCCGTCGCCCAGAAGGAGGAGGCAGGTACTGTGAGAAGTGTGATATGACTAATCACAGTACGAAATATTGCAGAGCTCACATCACATGTTCTTACTGTGGTATGAAGGGGCACTCTCAACCATATTGTCGAAAAAGAAAGAATGACATTACAAATGGAGGGTTACAGCAGCCTAAAGCGAATCATGTTGGTACACAGAATGGCGTCACAGAAGGGCAAAGCGATGGTTTTCCTTTCTCAAAACAGGAATGTCAACTTTTACTTAACAAGCTCATAGCCAAATCACAATCAACTTCTGCCAATTTGGTCGGTAATATTCAAAACTATGAAGAATTATCGGGACCTACGATCGGGGAGGATGATTGGGACAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

409

Amino Acids

45.4

Weight (kDa)

6.44

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 35 - 81 2.7e-20 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 63 - 164 6.8e-06 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 818
Acc36I ACCTGC 1 cut(s) 864
AccBSI CCGCTC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 436
AciI CCGC 2 cut(s) 92, 149
AclWI GGATC 4 cut(s) 52, 393, 647, 660
AcsI RAATTY 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 1053
AfaI GTAC 4 cut(s) 690, 878, 910, 1042
AfiI CCNNNNNNNGG 5 cut(s) 237, 271, 352, 866, 1199
AflIII ACRYGT 2 cut(s) 327, 935
AgsI TTSAA 3 cut(s) 269, 610, 1169
AjnI CCWGG 1 cut(s) 167
AleI CACNNNNGTG 1 cut(s) 444
AluBI AGCT 7 cut(s) 62, 125, 551, 666, 806, 926, 1120
AluI AGCT 7 cut(s) 62, 125, 551, 666, 806, 926, 1120
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 2 cut(s) 776, 794
AlwI GGATC 4 cut(s) 52, 393, 647, 660
AlwNI CAGNNNCTG 4 cut(s) 554, 749, 879, 1224
AoxI GGCC 3 cut(s) 189, 239, 775
ApeKI GCWGC 8 cut(s) 62, 65, 548, 551, 719, 752, 806, 1018
ApoI RAATTY 1 cut(s) 403
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
Asp700I GAANNNNTTC 2 cut(s) 264, 460
AspS9I GGNCC 2 cut(s) 190, 1190
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 80, 460
AsuII TTCGAA 1 cut(s) 621
AvaII GGWCC 1 cut(s) 1190
BaeGI GKGCMC 1 cut(s) 963
BamHI GGATCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 928
Bbv12I GWGCWC 1 cut(s) 928
BbvI GCAGC 8 cut(s) 49, 77, 538, 560, 731, 739, 793, 1030
BccI CCATC 3 cut(s) 181, 218, 1067
BciT130I CCWGG 1 cut(s) 169
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 776, 794
BfaI CTAG 3 cut(s) 360, 374, 380
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 864
BisI GCNGC 8 cut(s) 63, 66, 549, 552, 720, 753, 807, 1019
BlsI GCNGC 8 cut(s) 64, 67, 550, 553, 721, 754, 808, 1020
Bme1390I CCNGG 2 cut(s) 120, 169
Bme18I GGWCC 1 cut(s) 1190
BmgT120I GGNCC 2 cut(s) 190, 1190
BmiI GGNNCC 3 cut(s) 229, 654, 1191
BmrFI CCNGG 2 cut(s) 120, 169
BmsI GCATC 4 cut(s) 182, 269, 502, 729
Bpu14I TTCGAA 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 1053
BsaJI CCNNGG 2 cut(s) 71, 168
Bsc4I CCNNNNNNNGG 5 cut(s) 237, 271, 352, 866, 1199
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 71, 168
BseGI GGATG 3 cut(s) 501, 508, 1213
BseLI CCNNNNNNNGG 5 cut(s) 237, 271, 352, 866, 1199
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 882
BseSI GKGCMC 1 cut(s) 963
BseXI GCAGC 8 cut(s) 49, 77, 538, 560, 731, 739, 793, 1030
BsgI GTGCAG 1 cut(s) 520
Bsh1285I CGRYCG 1 cut(s) 1200
BshFI GGCC 3 cut(s) 191, 241, 777
BsiEI CGRYCG 1 cut(s) 1200
BsiHKAI GWGCWC 1 cut(s) 928
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 3 cut(s) 10, 287, 1203
BslI CCNNNNNNNGG 5 cut(s) 237, 271, 352, 866, 1199
BsmAI GTCTC 2 cut(s) 776, 794
BsmFI GGGAC 3 cut(s) 10, 287, 1203
BsnI GGCC 3 cut(s) 191, 241, 777
Bsp119I TTCGAA 1 cut(s) 621
Bsp1286I GDGCHC 2 cut(s) 928, 963
Bsp143I GATC 5 cut(s) 44, 306, 385, 652, 1197
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 2 cut(s) 92, 149
BspANI GGCC 3 cut(s) 191, 241, 777
BspCNI CTCAG 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 229, 654, 1191
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 864
BspPI GGATC 4 cut(s) 52, 393, 647, 660
BspT104I TTCGAA 1 cut(s) 621
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 71, 168
BssMI GATC 5 cut(s) 44, 306, 385, 652, 1197
BssNAI GTATAC 1 cut(s) 437
BssNI GRCGYC 1 cut(s) 1053
BssT1I CCWWGG 1 cut(s) 71
Bst1107I GTATAC 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 3 cut(s) 881, 908, 947
BstACI GRCGYC 1 cut(s) 1053
BstBI TTCGAA 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 555
BstDSI CCRYGG 1 cut(s) 71
BstEII GGTNACC 1 cut(s) 466
BstF5I GGATG 3 cut(s) 501, 508, 1213
BstKTI GATC 5 cut(s) 47, 309, 388, 655, 1200
BstMAI GTCTC 2 cut(s) 776, 794
BstMBI GATC 5 cut(s) 44, 306, 385, 652, 1197
BstMCI CGRYCG 1 cut(s) 1200
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 2 cut(s) 331, 939
BstPI GGTNACC 1 cut(s) 466
BstSCI CCNGG 2 cut(s) 118, 167
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 963
BstV1I GCAGC 8 cut(s) 49, 77, 538, 560, 731, 739, 793, 1030
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BstZ17I GTATAC 1 cut(s) 437
BsuRI GGCC 3 cut(s) 191, 241, 777
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 3 cut(s) 24, 752, 1086
BtsCI GGATG 3 cut(s) 501, 508, 1213
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 4 cut(s) 554, 749, 879, 1224
Cfr13I GGNCC 2 cut(s) 190, 1190
CseI GACGC 1 cut(s) 1042
Csp6I GTAC 4 cut(s) 689, 877, 909, 1041
CviAII CATG 6 cut(s) 72, 328, 571, 601, 936, 1034
CviQI GTAC 4 cut(s) 689, 877, 909, 1041
DdeI CTNAG 1 cut(s) 555
DpnI GATC 5 cut(s) 46, 308, 387, 654, 1199
DpnII GATC 5 cut(s) 44, 306, 385, 652, 1197
DrdI GACNNNNNNGTC 1 cut(s) 818
DseDI GACNNNNNNGTC 1 cut(s) 818
EciI GGCGGA 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 1190
Eco53kI GAGCTC 1 cut(s) 926
Eco91I GGTNACC 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 926
EcoO109I RGGNCCY 1 cut(s) 1190
EcoO65I GGTNACC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 6 cut(s) 75, 331, 574, 604, 939, 1037
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 3 cut(s) 10, 287, 1203
FatI CATG 6 cut(s) 71, 327, 570, 600, 935, 1033
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 679
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 8 cut(s) 63, 66, 549, 552, 720, 753, 807, 1019
FokI GGATG 3 cut(s) 508, 515, 1220
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 8 cut(s) 63, 66, 549, 552, 720, 753, 807, 1019
FspBI CTAG 3 cut(s) 360, 374, 380
GluI GCNGC 8 cut(s) 63, 66, 549, 552, 720, 753, 807, 1019
HaeIII GGCC 3 cut(s) 191, 241, 777
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 1042
Hin1I GRCGYC 1 cut(s) 1053
Hin1II CATG 6 cut(s) 75, 331, 574, 604, 939, 1037
HincII GTYRAC 1 cut(s) 1103
HindII GTYRAC 1 cut(s) 1103
HindIII AAGCTT 1 cut(s) 664
HinfI GANTC 3 cut(s) 17, 746, 1030
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 80, 460
Hpy166II GTNNAC 4 cut(s) 437, 449, 1043, 1103
Hpy188I TCNGA 5 cut(s) 49, 112, 139, 712, 834
Hpy188III TCNNGA 3 cut(s) 202, 845, 1188
Hpy8I GTNNAC 4 cut(s) 437, 449, 1043, 1103
Hpy99I CGWCG 2 cut(s) 181, 858
HpyAV CCTTC 9 cut(s) 34, 275, 484, 540, 766, 793, 857, 949, 1055
HpyCH4III ACNGT 3 cut(s) 881, 908, 947
HpyCH4V TGCA 6 cut(s) 65, 282, 351, 537, 719, 921
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 1 cut(s) 555
Hsp92I GRCGYC 1 cut(s) 1053
Hsp92II CATG 6 cut(s) 75, 331, 574, 604, 939, 1037
Kzo9I GATC 5 cut(s) 44, 306, 385, 652, 1197
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 8 cut(s) 49, 77, 538, 560, 731, 739, 793, 1030
LweI GCATC 4 cut(s) 182, 269, 502, 729
MaeI CTAG 3 cut(s) 360, 374, 380
MaeIII GTNAC 3 cut(s) 466, 1011, 1054
MalI GATC 5 cut(s) 46, 308, 387, 654, 1199
MbiI CCGCTC 1 cut(s) 94
MboI GATC 5 cut(s) 44, 306, 385, 652, 1197
MboII GAAGA 2 cut(s) 269, 1190
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 2 cut(s) 928, 963
MluCI AATT 7 cut(s) 33, 403, 460, 642, 823, 1150, 1181
MroXI GAANNNNTTC 2 cut(s) 264, 460
MseI TTAA 3 cut(s) 393, 561, 1113
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 120, 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 728
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 679
NdeII GATC 5 cut(s) 44, 306, 385, 652, 1197
NlaIII CATG 6 cut(s) 75, 331, 574, 604, 939, 1037
NlaIV GGNNCC 3 cut(s) 229, 654, 1191
NmeAIII GCCGAG 1 cut(s) 803
NmuCI GTSAC 2 cut(s) 466, 1054
NspI RCATGY 2 cut(s) 331, 939
NspV TTCGAA 1 cut(s) 621
OliI CACNNNNGTG 1 cut(s) 444
PciI ACATGT 2 cut(s) 327, 935
PcsI WCGNNNNNNNCGW 2 cut(s) 850, 1193
PdmI GAANNNNTTC 2 cut(s) 264, 460
PfeI GAWTC 3 cut(s) 17, 746, 1030
PkrI GCNGC 8 cut(s) 64, 67, 550, 553, 721, 754, 808, 1020
Ple19I CGATCG 1 cut(s) 1200
PpuMI RGGWCCY 1 cut(s) 1190
PscI ACATGT 2 cut(s) 327, 935
Psp124BI GAGCTC 1 cut(s) 928
Psp5II RGGWCCY 1 cut(s) 1190
Psp6I CCWGG 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 466
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 229, 654, 1191
PspPI GGNCC 2 cut(s) 190, 1190
PspPPI RGGWCCY 1 cut(s) 1190
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 4 cut(s) 554, 749, 879, 1224
PsuI RGATCY 1 cut(s) 652
PvuI CGATCG 1 cut(s) 1200
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 4 cut(s) 690, 878, 910, 1042
RsaNI GTAC 4 cut(s) 689, 877, 909, 1041
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 928
SaqAI TTAA 3 cut(s) 393, 561, 1113
SatI GCNGC 8 cut(s) 63, 66, 549, 552, 720, 753, 807, 1019
Sau3AI GATC 5 cut(s) 44, 306, 385, 652, 1197
Sau96I GGNCC 2 cut(s) 190, 1190
ScrFI CCNGG 2 cut(s) 120, 169
SduI GDGCHC 2 cut(s) 928, 963
SfaNI GCATC 4 cut(s) 182, 269, 502, 729
SfcI CTRYAG 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 621
SinI GGWCC 1 cut(s) 1190
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 7 cut(s) 33, 403, 460, 642, 823, 1150, 1181
SsiI CCGC 2 cut(s) 92, 149
SspI AATATT 2 cut(s) 917, 1165
SspMI CTAG 3 cut(s) 360, 374, 380
SstI GAGCTC 1 cut(s) 928
StyD4I CCNGG 2 cut(s) 118, 167
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 881, 908, 947
TaqI TCGA 5 cut(s) 179, 621, 694, 844, 979
TaqII GACCGA 1 cut(s) 454
TasI AATT 7 cut(s) 33, 403, 460, 642, 823, 1150, 1181
TatI WGTACW 1 cut(s) 688
TfiI GAWTC 3 cut(s) 17, 746, 1030
Tru1I TTAA 3 cut(s) 393, 561, 1113
Tru9I TTAA 3 cut(s) 393, 561, 1113
TseFI GTSAC 2 cut(s) 466, 1054
TseI GCWGC 8 cut(s) 62, 65, 548, 551, 719, 752, 806, 1018
Tsp45I GTSAC 2 cut(s) 466, 1054
TspDTI ATGAA 6 cut(s) 30, 519, 559, 605, 968, 1191
TspGWI ACGGA 3 cut(s) 751, 808, 842
VpaK11BI GGWCC 1 cut(s) 1190
XapI RAATTY 1 cut(s) 403
XceI RCATGY 2 cut(s) 331, 939
XmiI GTMKAC 1 cut(s) 436
XmnI GAANNNNTTC 2 cut(s) 264, 460
XspI CTAG 3 cut(s) 360, 374, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.