MD14G1033300.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000106
Physical Location & Seq
Reverse (-)
2952037 .. 2953827
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1033300.v1.1.491

Sequence Viewer

Length: 1791 bp
ATGATAAACTTTACAGCCAATCCCGCCATATTGATCAACGAGTTCGCAGCCTATCTCCACAAGAAACAGTTGCACAATGACTGTTTGGAAACCTCTATGTCTGAAAGCAAAAATCACACTGCTTTATTGGGAAAGTTCGCTGGATTTCTTGCAGAGACTGACCGTGTTCCACAAAATGATATGCCAGGTATCTTAAGTTCCTTCTCAACTGCTCTTAATGCTAGTTGTGTGCATGATTATTGGATTATAGATTCAGGAGCTATAGATCATATGACAAATCAACTCACCAAACTGCATGATTTTAAAATTATGTCCATTCCATCTCAAGTGTCAGTAGCTAATGGGAAAGGAGCCTCAGTTGTAGGAAAAGGAAAAATCAATATTCTTTCAGATCACATAGAGTCAATAGCACTTTATGTTCCTTCATTCCCTTGTCAACTGTTATCCGTTGGATCCCTCACAAAATCTTTAAATTGCCTAGCCATTTTCTCCCCTCATAATGTTGTTTTTCAAGATATCATCACCAAGAAGACGATTGGTGAAGGTTTCTTTTTAAATGGCCTTTACTACCTAGCCAAAGATTTCAAGACTTCCAAGGTTTTTCAAGCTAGCTCTAGTATACCACAAGACCAACATCTTTGGCACCTACGGTTGGCTCACCCCTCTGAAAAAGTGATGTCTTTTTTGTTCCCAAACCTGTGTAAGGACAAGATTCAATGTGATACTTGTCACTTGTCGAAATCTGTCAGATTACCCTTTGATTCATCCTTGTCTAGGGCTAGTAATCCTTTTGAAATCATTCATTCAGATATTTGGGGACCAGTTGTCGAGTCTTTTGATGGATATAGGTATTTTGTAACCTTTGTGGATGATTTTACAAGGATCACTTGGTTGTACCTTTTAAAGTTTAAAGGTGAATTTACAAGTGTGTTTCAAGATTTCCATAAGCTTGTTAGCACTCAATTCTCATCCAATATTCACATATTAAGATCTGATAATGGCACTGAATATATGTCCAATAATATGTCACAATATATGAGCAACCATGGCATTCTTCATCAAACAAGTTGTGTCGGTACTCCCCAACAAAACGGGGTTGCCGAGAGAAAAAATCGAGACCTTCTTGAGAAGACAAGAGCTCTCATGTTTCATATGCATGTACCTAAGAAGTTTTGGTCACAAGGGGTACTTACTGCTACATACCTCATCAACCGCCTCCCTAGTAAGGTGCTAGGTTTCAAATCTCCTTATGAAGTGTTGAAGGAGAGAAAGATTGACCTATCTCACTTAAAGGTCTTTGGGTGTATATGCTTTGTTCACACTCAACCTACTCATCGTGACAAACTTGATCCTCGGGCTAGTAAGTGTGTGTTCATGGGTTATTCATCTACACAAAAGGGGTATAAGTGTTATAATCCAGTCACTAAGAAGCTTGTAGTGTCTAGAGATGTTAGATTCAATGAGTCAACTCCCTACTTTACACATAAAGTGGGTGATACAAATCAGGGGGAGTCTCTACATGATTTCTTTCCATTACCTAACATCCCTTCTTATCAAGAAAAAGTAGTAGGGAATGACACTCCAAGCTCACCTACAGAATCCTTATCTCAAGTCTTCGAGCCACTACCTCCACCACAAGTCTCCGAGCCACTACCTCCACCACAAGTTTCAACTCGGAGAAATCCCACAAGAGATCGCCATCATCCATCTAGGCTTGTTGATTATGTTACCTATACTACAAGATATCCCCTTGCAGATTTTGTCACTTCCAAAAAATGCATTCCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

597

Amino Acids

67.44

Weight (kDa)

8.89

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 81 - 155 2e-13 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 187 - 248 7.5e-09 GAG-pre-integrase domain
rve PF00665 262 - 361 1.3e-12 Integrase core domain
SH3_retrovirus PF25597 435 - 494 8.6e-28 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1413
AccB1I GGYRCC 1 cut(s) 642
AccI GTMKAC 1 cut(s) 619
AciI CCGC 2 cut(s) 24, 1213
AclWI GGATC 4 cut(s) 447, 460, 890, 1343
AcsI RAATTY 1 cut(s) 917
AfaI GTAC 4 cut(s) 896, 1078, 1161, 1188
AfiI CCNNNNNNNGG 4 cut(s) 652, 703, 774, 1225
AflII CTTAAG 1 cut(s) 193
AhdI GACNNNNNGTC 1 cut(s) 824
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 8 cut(s) 260, 338, 608, 612, 949, 1139, 1432, 1587
AluI AGCT 8 cut(s) 260, 338, 608, 612, 949, 1139, 1432, 1587
Alw21I GWGCWC 1 cut(s) 1141
Alw26I GTCTC 4 cut(s) 149, 1110, 1518, 1645
AlwI GGATC 4 cut(s) 447, 460, 890, 1343
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 1353
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 917
Asp700I GAANNNNTTC 1 cut(s) 798
AspS9I GGNCC 1 cut(s) 818
AsuHPI GGTGA 7 cut(s) 277, 514, 551, 650, 926, 1505, 1581
AsuNHI GCTAGC 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 1353
AvaII GGWCC 1 cut(s) 818
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 642
BanII GRGCYC 1 cut(s) 1141
BbsI GAAGAC 3 cut(s) 536, 1136, 1606
Bbv12I GWGCWC 1 cut(s) 1141
BbvI GCAGC 1 cut(s) 59
BccI CCATC 4 cut(s) 328, 833, 1707, 1714
BciT130I CCWGG 1 cut(s) 186
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 4 cut(s) 149, 1110, 1518, 1645
BfmI CTRYAG 2 cut(s) 261, 1593
BfrI CTTAAG 1 cut(s) 193
BglII AGATCT 1 cut(s) 989
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 818
BmeRI GACNNNNNGTC 1 cut(s) 824
BmeT110I CYCGRG 1 cut(s) 1353
BmgT120I GGNCC 1 cut(s) 818
BmiI GGNNCC 4 cut(s) 352, 454, 644, 819
BmrFI CCNGG 1 cut(s) 186
BmtI GCTAGC 1 cut(s) 612
BpiI GAAGAC 3 cut(s) 536, 1136, 1606
BpuEI CTTGAG 3 cut(s) 309, 1145, 1593
BsaBI GATNNNNATC 2 cut(s) 1500, 1698
BsaI GGTCTC 1 cut(s) 1110
BsaJI CCNNGG 3 cut(s) 594, 1045, 1352
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 4 cut(s) 652, 703, 774, 1225
Bse1I ACTGG 2 cut(s) 821, 1418
Bse8I GATNNNNATC 2 cut(s) 1500, 1698
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 594, 1045, 1352
BseGI GGATG 5 cut(s) 764, 874, 968, 1542, 1702
BseJI GATNNNNATC 2 cut(s) 1500, 1698
BseLI CCNNNNNNNGG 4 cut(s) 652, 703, 774, 1225
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 821, 1418
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 561
BshNI GGYRCC 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 1141
BsiHKCI CYCGRG 1 cut(s) 1353
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 4 cut(s) 652, 703, 774, 1225
BsmAI GTCTC 4 cut(s) 149, 1110, 1518, 1645
BsmFI GGGAC 1 cut(s) 831
BsmI GAATGC 2 cut(s) 1050, 1779
BsnI GGCC 1 cut(s) 561
Bso31I GGTCTC 1 cut(s) 1110
BsoBI CYCGRG 1 cut(s) 1353
Bsp1286I GDGCHC 1 cut(s) 1141
Bsp143I GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
Bsp19I CCATGG 1 cut(s) 1045
BspACI CCGC 2 cut(s) 24, 1213
BspANI GGCC 1 cut(s) 561
BspCNI CTCAG 1 cut(s) 368
BspLI GGNNCC 4 cut(s) 352, 454, 644, 819
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 4 cut(s) 447, 460, 890, 1343
BspT107I GGYRCC 1 cut(s) 642
BspTI CTTAAG 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 1110
BsrI ACTGG 2 cut(s) 821, 1418
BssECI CCNNGG 3 cut(s) 594, 1045, 1352
BssMI GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
BssNAI GTATAC 1 cut(s) 620
BssT1I CCWWGG 2 cut(s) 594, 1045
Bst1107I GTATAC 1 cut(s) 620
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 5 cut(s) 69, 83, 164, 441, 651
BstAFI CTTAAG 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 3 cut(s) 355, 1164, 1425
BstDSI CCRYGG 1 cut(s) 1045
BstENI CCTNNNNNAGG 2 cut(s) 701, 772
BstF5I GGATG 5 cut(s) 764, 874, 968, 1542, 1702
BstKTI GATC 8 cut(s) 36, 268, 394, 455, 885, 992, 1351, 1696
BstMAI GTCTC 4 cut(s) 149, 1110, 1518, 1645
BstMBI GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
BstMWI GCNNNNNNNGC 3 cut(s) 23, 218, 1047
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 2 cut(s) 261, 1593
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 3 cut(s) 536, 1136, 1606
BstX2I RGATCY 2 cut(s) 452, 989
BstYI RGATCY 2 cut(s) 452, 989
BstZ17I GTATAC 1 cut(s) 620
BsuRI GGCC 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 1045
BtsCI GGATG 5 cut(s) 764, 874, 968, 1542, 1702
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 117, 1002
Cac8I GCNNGC 1 cut(s) 610
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 818
Csp6I GTAC 4 cut(s) 895, 1077, 1160, 1187
CviAII CATG 7 cut(s) 233, 296, 1046, 1144, 1157, 1375, 1520
CviQI GTAC 4 cut(s) 895, 1077, 1160, 1187
DdeI CTNAG 3 cut(s) 355, 1164, 1425
DpnI GATC 8 cut(s) 35, 267, 393, 454, 884, 991, 1350, 1695
DpnII GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
DraI TTTAAA 5 cut(s) 304, 471, 555, 903, 910
DriI GACNNNNNGTC 1 cut(s) 824
Eam1105I GACNNNNNGTC 1 cut(s) 824
Ecl136II GAGCTC 1 cut(s) 1139
Eco130I CCWWGG 2 cut(s) 594, 1045
Eco24I GRGCYC 1 cut(s) 1141
Eco31I GGTCTC 1 cut(s) 1110
Eco32I GATATC 2 cut(s) 517, 1745
Eco47I GGWCC 1 cut(s) 818
Eco53kI GAGCTC 1 cut(s) 1139
Eco88I CYCGRG 1 cut(s) 1353
EcoICRI GAGCTC 1 cut(s) 1139
EcoNI CCTNNNNNAGG 2 cut(s) 701, 772
EcoRII CCWGG 1 cut(s) 184
EcoRV GATATC 2 cut(s) 517, 1745
EcoT14I CCWWGG 2 cut(s) 594, 1045
EcoT22I ATGCAT 2 cut(s) 1158, 1781
EcoT38I GRGCYC 1 cut(s) 1141
ErhI CCWWGG 2 cut(s) 594, 1045
FaeI CATG 7 cut(s) 236, 299, 1049, 1147, 1160, 1378, 1523
FalI AAGNNNNNCTT 4 cut(s) 871, 903, 1173, 1205
FaqI GGGAC 1 cut(s) 831
FatI CATG 7 cut(s) 232, 295, 1045, 1143, 1156, 1374, 1519
FauI CCCGC 1 cut(s) 31
FauNDI CATATG 2 cut(s) 270, 1152
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 5 cut(s) 751, 881, 955, 1529, 1689
FriOI GRGCYC 1 cut(s) 1141
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 561
Hin1II CATG 7 cut(s) 236, 299, 1049, 1147, 1160, 1378, 1523
HincII GTYRAC 2 cut(s) 437, 1467
HindII GTYRAC 2 cut(s) 437, 1467
HindIII AAGCTT 2 cut(s) 947, 1430
HinfI GANTC 9 cut(s) 251, 401, 712, 761, 830, 1455, 1463, 1511, 1598
HphI GGTGA 7 cut(s) 277, 514, 551, 650, 926, 1505, 1581
Hpy166II GTNNAC 4 cut(s) 437, 620, 1318, 1467
Hpy188I TCNGA 8 cut(s) 103, 391, 667, 749, 808, 994, 1645, 1677
Hpy188III TCNNGA 9 cut(s) 255, 512, 586, 935, 1115, 1124, 1337, 1443, 1556
Hpy8I GTNNAC 4 cut(s) 437, 620, 1318, 1467
HpyAV CCTTC 6 cut(s) 211, 432, 536, 1130, 1255, 1557
HpyCH4III ACNGT 5 cut(s) 69, 83, 164, 441, 651
HpyCH4V TGCA 7 cut(s) 73, 152, 232, 295, 1156, 1754, 1779
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 218, 1047
HpyF3I CTNAG 3 cut(s) 355, 1164, 1425
Hsp92II CATG 7 cut(s) 236, 299, 1049, 1147, 1160, 1378, 1523
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
LmnI GCTCC 2 cut(s) 257, 350
LpnPI CCDG 8 cut(s) 126, 171, 198, 240, 710, 834, 1431, 1490
Lsp1109I GCAGC 1 cut(s) 59
MaeIII GTNAC 8 cut(s) 728, 856, 1026, 1176, 1337, 1420, 1726, 1762
MalI GATC 8 cut(s) 35, 267, 393, 454, 884, 991, 1350, 1695
MboI GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
MboII GAAGA 4 cut(s) 541, 1046, 1141, 1606
MflI RGATCY 2 cut(s) 452, 989
MhlI GDGCHC 1 cut(s) 1141
MluCI AATT 4 cut(s) 306, 472, 917, 962
MlyI GAGTC 4 cut(s) 410, 839, 1472, 1520
MmeI TCCRAC 1 cut(s) 430
Mph1103I ATGCAT 2 cut(s) 1158, 1781
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 9 cut(s) 194, 216, 303, 470, 554, 902, 909, 986, 1289
MslI CAYNNNNRTG 1 cut(s) 1155
MspCI CTTAAG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 1050, 1779
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 23, 218, 1047
NcoI CCATGG 1 cut(s) 1045
NdeI CATATG 2 cut(s) 270, 1152
NdeII GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 7 cut(s) 236, 299, 1049, 1147, 1160, 1378, 1523
NlaIV GGNNCC 4 cut(s) 352, 454, 644, 819
NmeAIII GCCGAG 1 cut(s) 1126
NmuCI GTSAC 6 cut(s) 728, 1026, 1176, 1337, 1420, 1762
NsiI ATGCAT 2 cut(s) 1158, 1781
NspI RCATGY 1 cut(s) 1160
PcsI WCGNNNNNNNCGW 1 cut(s) 1098
PctI GAATGC 2 cut(s) 1050, 1779
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 5 cut(s) 251, 712, 761, 1455, 1598
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 4 cut(s) 409, 838, 1471, 1519
PpsI GAGTC 4 cut(s) 409, 838, 1471, 1519
PsiI TTATAA 1 cut(s) 1413
Psp124BI GAGCTC 1 cut(s) 1141
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 4 cut(s) 352, 454, 644, 819
PspPI GGNCC 1 cut(s) 818
PsrI GAACNNNNNNTAC 2 cut(s) 181, 213
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 452, 989
RsaI GTAC 4 cut(s) 896, 1078, 1161, 1188
RsaNI GTAC 4 cut(s) 895, 1077, 1160, 1187
RseI CAYNNNNRTG 1 cut(s) 1155
SacI GAGCTC 1 cut(s) 1141
SaqAI TTAA 9 cut(s) 194, 216, 303, 470, 554, 902, 909, 986, 1289
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 8 cut(s) 33, 265, 391, 452, 882, 989, 1348, 1693
Sau96I GGNCC 1 cut(s) 818
SchI GAGTC 4 cut(s) 410, 839, 1472, 1520
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 1141
SfcI CTRYAG 2 cut(s) 261, 1593
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 1155
SmlI CTYRAG 4 cut(s) 193, 324, 1124, 1608
SmoI CTYRAG 4 cut(s) 193, 324, 1124, 1608
Sse9I AATT 4 cut(s) 306, 472, 917, 962
SsiI CCGC 2 cut(s) 24, 1213
SspI AATATT 2 cut(s) 382, 976
SstI GAGCTC 1 cut(s) 1141
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 2 cut(s) 594, 1045
TaaI ACNGT 5 cut(s) 69, 83, 164, 441, 651
TaqI TCGA 4 cut(s) 737, 828, 1114, 1617
TasI AATT 4 cut(s) 306, 472, 917, 962
TfiI GAWTC 5 cut(s) 251, 712, 761, 1455, 1598
Tru1I TTAA 9 cut(s) 194, 216, 303, 470, 554, 902, 909, 986, 1289
Tru9I TTAA 9 cut(s) 194, 216, 303, 470, 554, 902, 909, 986, 1289
TscAI CASTG 2 cut(s) 124, 1009
TseFI GTSAC 6 cut(s) 728, 1026, 1176, 1337, 1420, 1762
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 6 cut(s) 728, 1026, 1176, 1337, 1420, 1762
TspDTI ATGAA 8 cut(s) 414, 753, 791, 1046, 1139, 1266, 1363, 1374
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 2 cut(s) 124, 1009
Vha464I CTTAAG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 818
XagI CCTNNNNNAGG 2 cut(s) 701, 772
XapI RAATTY 1 cut(s) 917
XbaI TCTAGA 1 cut(s) 1442
XceI RCATGY 1 cut(s) 1160
XmiI GTMKAC 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 798
Zsp2I ATGCAT 2 cut(s) 1158, 1781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.