Rw2G004140

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000106
Physical Location & Seq
Reverse (-)
3937478 .. 3938973
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004140.1

Sequence Viewer

Length: 1170 bp
ATGGCTGGTGATAACGTCCCACCATCACCATCCAATCCCAGCAAATCAGATAATTCAAAATCTGATGTCTCAAATCCATTCTTCACTCATCATTCAGACCACCCTGGATTGGTCCTAGTCTCCAAGCCTTTGAATGGAGACAATTACACAGGTTGGAAGAGGGCTATGACATTGGCTCTTAATTCTAAAAACAAACTCGGCTTTGTGAATGGTTCAATCAAAGCTCCATCATCCGAAGCTGATCCTGAAGGATATGCAACTTGGTCAAGATGCAATGACATGGTCCATTCATGGATCGTTAACACTGTCAGTTCTGAAATTGCTGACAGTATCATCTACTATCCTACAGCTCATGAGGTATGGGAAGATCTAAGTGAGCGTTTTTCACAAGGCAATGCACCTCGCATATTTGAAATTCAGCGAGACATCGCTTCACTCAGGCAAGAACAACAATCAGTTTCAGCATACTACACGAAATTGAAGAGTTTATGGGATGAATTGGCAACCTATTCAGAAGCATCACAAGGAGCCCAGGCAGATCAACAGAAACTTATGCAGTTCTTGATGGGATTAAATGAGACTTACAGCGCAACCCGCGGTCAAATCCTCTTGATGAATCCCCTTCCAAGTATCAGACAAGCGTATGCTGCCGTTGCCCAAGAAGAGAAGCAACGTTTCATAGCAGCAGCGGAGTCTGGTTCAAGCGCTGCTGCCATGGCAGTTCGAAGTGGCGGCCGGTCGAACCAGATCGGCAGTAGAGGCGGTCGTGGTGACCGACTGAATTTTCAGACCGGTCAGGATGCAGAACGCGGCTTCACCCCGCGTTTTGGTTCAGGTCGAGGAAGGGGAAGGCCGCATTGTACCTATTGTGGTGATCCTGGACATTGGGTCCAAACATGCTTTCACTTGATTGGTTTTCCTCCAGGTCATCCCAAAGCAAAGCAAGGATCAGGAAATTTCCCCAAGAAGCACACTGCTTCACCAGTCGCGCCATCTCCTTCTGCTCACCAGGTTAGTGCGACAGGCATCGTAGAAGAGGTGAAAGGATCAGCAATTACTTTATCTGAGGCCCAATTCCAGCAGTTTTTAGCTGCTCTTCAACAAGCCCAAAAGCCCAATCCAAATACTGACTCGAGATCTGGTTACGAAGAGGACGATTGGTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3

Protein Analysis

389

Amino Acids

42.36

Weight (kDa)

6.84

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 30 - 76 1.5e-23 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 56 - 225 3.1e-10 gag-polypeptide of LTR copia-type
Retrotrans_gag PF03732 92 - 193 8.7e-09 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 597, 810, 823, 989
AciI CCGC 8 cut(s) 595, 597, 689, 732, 762, 810, 821, 854
AclI AACGTT 1 cut(s) 673
AclWI GGATC 5 cut(s) 236, 302, 869, 955, 1054
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 3 cut(s) 414, 781, 955
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 862
AfeI AGCGCT 1 cut(s) 706
AfiI CCNNNNNNNGG 3 cut(s) 109, 134, 827
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 7 cut(s) 57, 133, 216, 413, 481, 702, 1100
AhdI GACNNNNNGTC 1 cut(s) 887
AjnI CCWGG 5 cut(s) 103, 531, 877, 922, 1008
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 4 cut(s) 224, 239, 350, 1091
AluI AGCT 4 cut(s) 224, 239, 350, 1091
Alw26I GTCTC 5 cut(s) 73, 124, 132, 417, 572
AlwI GGATC 5 cut(s) 236, 302, 869, 955, 1054
Ama87I CYCGRG 1 cut(s) 1132
Aor51HI AGCGCT 1 cut(s) 706
AoxI GGCC 3 cut(s) 733, 851, 1068
ApeKI GCWGC 6 cut(s) 647, 683, 686, 707, 710, 1091
ApoI RAATTY 3 cut(s) 414, 781, 955
ArsI GACNNNNNNTTYG 1 cut(s) 1145
AsiGI ACCGGT 1 cut(s) 791
AspLEI GCGC 3 cut(s) 590, 707, 991
AspS9I GGNCC 4 cut(s) 112, 283, 889, 1069
AsuHPI GGTGA 8 cut(s) 18, 20, 782, 808, 884, 972, 998, 1051
AsuII TTCGAA 1 cut(s) 724
AvaI CYCGRG 1 cut(s) 1132
AvaII GGWCC 3 cut(s) 112, 283, 889
BanII GRGCYC 1 cut(s) 532
BbvI GCAGC 6 cut(s) 634, 694, 695, 697, 698, 1078
BccI CCATC 5 cut(s) 31, 37, 235, 559, 1000
BceAI ACGGC 1 cut(s) 635
BciT130I CCWGG 5 cut(s) 105, 533, 879, 924, 1010
BcoDI GTCTC 5 cut(s) 73, 124, 132, 417, 572
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 708
BglII AGATCT 2 cut(s) 367, 1136
BisI GCNGC 9 cut(s) 648, 684, 687, 708, 711, 733, 811, 854, 1092
BlsI GCNGC 9 cut(s) 649, 685, 688, 709, 712, 734, 812, 855, 1093
Bme1390I CCNGG 5 cut(s) 105, 533, 879, 924, 1010
Bme18I GGWCC 3 cut(s) 112, 283, 889
BmeRI GACNNNNNGTC 1 cut(s) 887
BmeT110I CYCGRG 1 cut(s) 1132
BmgT120I GGNCC 4 cut(s) 112, 283, 889, 1069
BmiI GGNNCC 2 cut(s) 529, 890
BmrFI CCNGG 5 cut(s) 105, 533, 879, 924, 1010
BmsI GCATC 4 cut(s) 260, 527, 790, 1035
BpmI CTGGAG 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 724
BsaJI CCNNGG 4 cut(s) 103, 531, 595, 714
BsaWI WCCGGW 1 cut(s) 791
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 134, 827
Bse118I RCCGGY 2 cut(s) 735, 791
Bse1I ACTGG 1 cut(s) 983
Bse3DI GCAATG 2 cut(s) 280, 400
BseBI CCWGG 5 cut(s) 105, 533, 879, 924, 1010
BseDI CCNNGG 4 cut(s) 103, 531, 595, 714
BseGI GGATG 5 cut(s) 29, 230, 499, 805, 928
BseLI CCNNNNNNNGG 3 cut(s) 109, 134, 827
BseMI GCAATG 2 cut(s) 280, 400
BseMII CTCAG 2 cut(s) 451, 1056
BseNI ACTGG 1 cut(s) 983
BseX3I CGGCCG 1 cut(s) 733
BseXI GCAGC 6 cut(s) 634, 694, 695, 697, 698, 1078
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 4 cut(s) 597, 810, 823, 989
Bsh1285I CGRYCG 3 cut(s) 736, 740, 766
BshFI GGCC 3 cut(s) 735, 853, 1070
BshTI ACCGGT 1 cut(s) 791
BsiEI CGRYCG 3 cut(s) 736, 740, 766
BsiHKCI CYCGRG 1 cut(s) 1132
BsiSI CCGG 2 cut(s) 736, 792
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 3 cut(s) 109, 134, 827
BsmAI GTCTC 5 cut(s) 73, 124, 132, 417, 572
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 3 cut(s) 735, 853, 1070
BsoBI CYCGRG 1 cut(s) 1132
Bsp119I TTCGAA 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 8 cut(s) 595, 597, 689, 732, 762, 810, 821, 854
BspANI GGCC 3 cut(s) 735, 853, 1070
BspCNI CTCAG 2 cut(s) 450, 1057
BspFNI CGCG 4 cut(s) 597, 810, 823, 989
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 529, 890
BspPI GGATC 5 cut(s) 236, 302, 869, 955, 1054
BspQI GCTCTTC 1 cut(s) 1101
BspT104I TTCGAA 1 cut(s) 724
BsrDI GCAATG 2 cut(s) 280, 400
BsrFI RCCGGY 2 cut(s) 735, 791
BsrI ACTGG 1 cut(s) 983
BssAI RCCGGY 2 cut(s) 735, 791
BssECI CCNNGG 4 cut(s) 103, 531, 595, 714
BssMI GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
BssT1I CCWWGG 1 cut(s) 714
Bst2UI CCWGG 5 cut(s) 105, 533, 879, 924, 1010
Bst4CI ACNGT 2 cut(s) 307, 329
Bst6I CTCTTC 6 cut(s) 152, 476, 657, 1029, 1101, 1143
BstBI TTCGAA 1 cut(s) 724
BstDEI CTNAG 3 cut(s) 371, 437, 1065
BstDSI CCRYGG 2 cut(s) 595, 714
BstEII GGTNACC 1 cut(s) 770
BstF5I GGATG 5 cut(s) 29, 230, 499, 805, 928
BstFNI CGCG 4 cut(s) 597, 810, 823, 989
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 3 cut(s) 590, 707, 991
BstKTI GATC 9 cut(s) 244, 297, 370, 541, 750, 877, 950, 1049, 1139
BstMAI GTCTC 5 cut(s) 73, 124, 132, 417, 572
BstMBI GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
BstMCI CGRYCG 3 cut(s) 736, 740, 766
BstMWI GCNNNNNNNGC 5 cut(s) 594, 647, 653, 716, 759
BstNI CCWGG 5 cut(s) 105, 533, 879, 924, 1010
BstNSI RCATGY 1 cut(s) 900
BstPI GGTNACC 1 cut(s) 770
BstSCI CCNGG 5 cut(s) 103, 531, 877, 922, 1008
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 4 cut(s) 597, 810, 823, 989
BstV1I GCAGC 6 cut(s) 634, 694, 695, 697, 698, 1078
BstX2I RGATCY 2 cut(s) 367, 1136
BstYI RGATCY 2 cut(s) 367, 1136
BstZI CGGCCG 1 cut(s) 733
BsuRI GGCC 3 cut(s) 735, 853, 1070
BtgI CCRYGG 2 cut(s) 595, 714
BtgZI GCGATG 1 cut(s) 412
BtsCI GGATG 5 cut(s) 29, 230, 499, 805, 928
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 2 cut(s) 303, 972
CciI TCATGA 1 cut(s) 352
CfoI GCGC 3 cut(s) 590, 707, 991
Cfr10I RCCGGY 2 cut(s) 735, 791
Cfr13I GGNCC 4 cut(s) 112, 283, 889, 1069
Cfr42I CCGCGG 1 cut(s) 598
CsiI ACCWGGT 1 cut(s) 1008
Csp6I GTAC 1 cut(s) 861
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 5 cut(s) 280, 291, 353, 715, 897
CviQI GTAC 1 cut(s) 861
DdeI CTNAG 3 cut(s) 371, 437, 1065
DpnI GATC 9 cut(s) 243, 296, 369, 540, 749, 876, 949, 1048, 1138
DpnII GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
DriI GACNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 1 cut(s) 733
EagI CGGCCG 1 cut(s) 733
Eam1104I CTCTTC 6 cut(s) 152, 476, 657, 1029, 1101, 1143
Eam1105I GACNNNNNGTC 1 cut(s) 887
EarI CTCTTC 6 cut(s) 152, 476, 657, 1029, 1101, 1143
EclXI CGGCCG 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 112, 283, 889
Eco47III AGCGCT 1 cut(s) 706
Eco52I CGGCCG 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 1132
Eco91I GGTNACC 1 cut(s) 770
EcoO65I GGTNACC 1 cut(s) 770
EcoRII CCWGG 5 cut(s) 103, 531, 877, 922, 1008
EcoT14I CCWWGG 1 cut(s) 714
EcoT38I GRGCYC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 5 cut(s) 283, 294, 356, 718, 900
FaqI GGGAC 1 cut(s) 2
FatI CATG 5 cut(s) 279, 290, 352, 714, 896
FauI CCCGC 2 cut(s) 602, 828
Fnu4HI GCNGC 9 cut(s) 648, 684, 687, 708, 711, 733, 811, 854, 1092
FokI GGATG 5 cut(s) 16, 217, 506, 812, 915
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 9 cut(s) 648, 684, 687, 708, 711, 733, 811, 854, 1092
FspBI CTAG 1 cut(s) 116
GlaI GCGC 3 cut(s) 589, 706, 990
GluI GCNGC 9 cut(s) 648, 684, 687, 708, 711, 733, 811, 854, 1092
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 906
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 3 cut(s) 735, 853, 1070
HapII CCGG 2 cut(s) 736, 792
HhaI GCGC 3 cut(s) 590, 707, 991
Hin1II CATG 5 cut(s) 283, 294, 356, 718, 900
Hin6I GCGC 3 cut(s) 588, 705, 989
HinP1I GCGC 3 cut(s) 588, 705, 989
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 3 cut(s) 616, 692, 1130
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 2 cut(s) 736, 792
HphI GGTGA 8 cut(s) 18, 20, 782, 808, 884, 972, 998, 1051
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 9 cut(s) 49, 64, 97, 235, 316, 514, 635, 789, 1066
Hpy188III TCNNGA 8 cut(s) 245, 267, 353, 562, 610, 797, 951, 1134
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 5 cut(s) 242, 632, 837, 843, 1008
HpyCH4III ACNGT 2 cut(s) 307, 329
HpyCH4IV ACGT 2 cut(s) 15, 673
HpyCH4V TGCA 5 cut(s) 257, 273, 398, 556, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 594, 647, 653, 716, 759
HpyF3I CTNAG 3 cut(s) 371, 437, 1065
HpySE526I ACGT 2 cut(s) 15, 673
Hsp92II CATG 5 cut(s) 283, 294, 356, 718, 900
HspAI GCGC 3 cut(s) 588, 705, 989
KspAI GTTAAC 1 cut(s) 301
KspI CCGCGG 1 cut(s) 598
Kzo9I GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
LguI GCTCTTC 1 cut(s) 1101
LmnI GCTCC 2 cut(s) 229, 527
Lsp1109I GCAGC 6 cut(s) 634, 694, 695, 697, 698, 1078
LweI GCATC 4 cut(s) 260, 527, 790, 1035
MabI ACCWGGT 1 cut(s) 1008
MaeI CTAG 1 cut(s) 116
MaeII ACGT 2 cut(s) 15, 673
MaeIII GTNAC 2 cut(s) 770, 1142
MalI GATC 9 cut(s) 243, 296, 369, 540, 749, 876, 949, 1048, 1138
MboI GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
MboII GAAGA 8 cut(s) 73, 169, 377, 493, 674, 1046, 1088, 1160
MflI RGATCY 2 cut(s) 367, 1136
MhlI GDGCHC 1 cut(s) 532
MlyI GAGTC 2 cut(s) 701, 1124
MmeI TCCRAC 1 cut(s) 134
MseI TTAA 3 cut(s) 180, 300, 572
MspA1I CMGCKG 2 cut(s) 597, 689
MspI CCGG 2 cut(s) 736, 792
MspR9I CCNGG 5 cut(s) 105, 533, 879, 924, 1010
MvaI CCWGG 5 cut(s) 105, 533, 879, 924, 1010
MvnI CGCG 4 cut(s) 597, 810, 823, 989
MwoI GCNNNNNNNGC 5 cut(s) 594, 647, 653, 716, 759
NcoI CCATGG 1 cut(s) 714
NdeII GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
NlaIII CATG 5 cut(s) 283, 294, 356, 718, 900
NlaIV GGNNCC 2 cut(s) 529, 890
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 770
NspI RCATGY 1 cut(s) 900
NspV TTCGAA 1 cut(s) 724
PaeR7I CTCGAG 1 cut(s) 1132
PagI TCATGA 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 1101
PcsI WCGNNNNNNNCGW 2 cut(s) 772, 1152
PfeI GAWTC 1 cut(s) 616
PflFI GACNNNGTC 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 877
PinAI ACCGGT 1 cut(s) 791
PkrI GCNGC 9 cut(s) 649, 685, 688, 709, 712, 734, 812, 855, 1093
PleI GAGTC 2 cut(s) 700, 1124
PpsI GAGTC 2 cut(s) 700, 1124
Psp1406I AACGTT 1 cut(s) 673
Psp6I CCWGG 5 cut(s) 103, 531, 877, 922, 1008
PspEI GGTNACC 1 cut(s) 770
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 5 cut(s) 103, 531, 877, 922, 1008
PspN4I GGNNCC 2 cut(s) 529, 890
PspPI GGNCC 4 cut(s) 112, 283, 889, 1069
PsuI RGATCY 2 cut(s) 367, 1136
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 1 cut(s) 862
RsaNI GTAC 1 cut(s) 861
SacII CCGCGG 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 1101
SaqAI TTAA 3 cut(s) 180, 300, 572
SatI GCNGC 9 cut(s) 648, 684, 687, 708, 711, 733, 811, 854, 1092
Sau3AI GATC 9 cut(s) 241, 294, 367, 538, 747, 874, 947, 1046, 1136
Sau96I GGNCC 4 cut(s) 112, 283, 889, 1069
SchI GAGTC 2 cut(s) 701, 1124
ScrFI CCNGG 5 cut(s) 105, 533, 879, 924, 1010
SduI GDGCHC 1 cut(s) 532
SexAI ACCWGGT 1 cut(s) 1008
SfaNI GCATC 4 cut(s) 260, 527, 790, 1035
SfcI CTRYAG 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 1132
Sfr303I CCGCGG 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 724
SgrBI CCGCGG 1 cut(s) 598
SinI GGWCC 3 cut(s) 112, 283, 889
SlaI CTCGAG 1 cut(s) 1132
SmlI CTYRAG 1 cut(s) 1132
SmoI CTYRAG 1 cut(s) 1132
SsiI CCGC 8 cut(s) 595, 597, 689, 732, 762, 810, 821, 854
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 5 cut(s) 103, 531, 877, 922, 1008
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 2 cut(s) 307, 329
TaiI ACGT 2 cut(s) 18, 676
TaqI TCGA 4 cut(s) 724, 740, 838, 1133
TaqII GACCGA 1 cut(s) 789
TauI GCSGC 3 cut(s) 735, 813, 856
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 3 cut(s) 180, 300, 572
Tru9I TTAA 3 cut(s) 180, 300, 572
TscAI CASTG 2 cut(s) 310, 979
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 6 cut(s) 647, 683, 686, 707, 710, 1091
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 4 cut(s) 279, 510, 629, 667
TspRI CASTG 2 cut(s) 310, 979
Tth111I GACNNNGTC 1 cut(s) 281
VpaK11BI GGWCC 3 cut(s) 112, 283, 889
XapI RAATTY 3 cut(s) 414, 781, 955
XceI RCATGY 1 cut(s) 900
XhoI CTCGAG 1 cut(s) 1132
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.