gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 55, 1279 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AfaI | GTAC | 3 cut(s) | 233, 241, 996 |
| AflIII | ACRYGT | 2 cut(s) | 766, 837 |
| AleI | CACNNNNGTG | 1 cut(s) | 711 |
| AluBI | AGCT | 3 cut(s) | 15, 257, 378 |
| AluI | AGCT | 3 cut(s) | 15, 257, 378 |
| Alw21I | GWGCWC | 2 cut(s) | 28, 1121 |
| Alw26I | GTCTC | 2 cut(s) | 163, 188 |
| Alw44I | GTGCAC | 1 cut(s) | 1117 |
| ApaLI | GTGCAC | 1 cut(s) | 1117 |
| ApeKI | GCWGC | 2 cut(s) | 857, 903 |
| ApoI | RAATTY | 2 cut(s) | 55, 1279 |
| AsuHPI | GGTGA | 3 cut(s) | 323, 802, 998 |
| AsuII | TTCGAA | 1 cut(s) | 31 |
| BaeGI | GKGCMC | 2 cut(s) | 1074, 1121 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 126, 159 |
| Bbv12I | GWGCWC | 2 cut(s) | 28, 1121 |
| BbvCI | CCTCAGC | 1 cut(s) | 246 |
| BbvI | GCAGC | 2 cut(s) | 869, 890 |
| BccI | CCATC | 3 cut(s) | 119, 302, 970 |
| BclI | TGATCA | 3 cut(s) | 478, 556, 960 |
| BcoDI | GTCTC | 2 cut(s) | 163, 188 |
| BfaI | CTAG | 8 cut(s) | 116, 177, 221, 297, 336, 564, 992, 1238 |
| BfmI | CTRYAG | 1 cut(s) | 904 |
| BisI | GCNGC | 2 cut(s) | 858, 904 |
| BlsI | GCNGC | 2 cut(s) | 859, 905 |
| BmsI | GCATC | 3 cut(s) | 648, 805, 1282 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 182, 214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 246 |
| Bpu14I | TTCGAA | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 1 cut(s) | 558 |
| BsaAI | YACGTR | 2 cut(s) | 210, 278 |
| BsaBI | GATNNNNATC | 1 cut(s) | 783 |
| BsaI | GGTCTC | 1 cut(s) | 188 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 506, 536 |
| Bse3DI | GCAATG | 1 cut(s) | 988 |
| Bse8I | GATNNNNATC | 1 cut(s) | 783 |
| BseGI | GGATG | 1 cut(s) | 220 |
| BseJI | GATNNNNATC | 1 cut(s) | 783 |
| BseMI | GCAATG | 1 cut(s) | 988 |
| BseMII | CTCAG | 2 cut(s) | 174, 237 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| BseSI | GKGCMC | 2 cut(s) | 1074, 1121 |
| BseXI | GCAGC | 2 cut(s) | 869, 890 |
| BsiHKAI | GWGCWC | 2 cut(s) | 28, 1121 |
| BsmAI | GTCTC | 2 cut(s) | 163, 188 |
| Bso31I | GGTCTC | 1 cut(s) | 188 |
| Bsp119I | TTCGAA | 1 cut(s) | 31 |
| Bsp1286I | GDGCHC | 3 cut(s) | 28, 1074, 1121 |
| Bsp143I | GATC | 4 cut(s) | 478, 556, 960, 988 |
| BspCNI | CTCAG | 2 cut(s) | 173, 238 |
| BspMAI | CTGCAG | 1 cut(s) | 908 |
| BspQI | GCTCTTC | 2 cut(s) | 33, 629 |
| BspT104I | TTCGAA | 1 cut(s) | 31 |
| BspTNI | GGTCTC | 1 cut(s) | 188 |
| BsrDI | GCAATG | 1 cut(s) | 988 |
| BssMI | GATC | 4 cut(s) | 478, 556, 960, 988 |
| Bst4CI | ACNGT | 2 cut(s) | 752, 1101 |
| Bst6I | CTCTTC | 3 cut(s) | 33, 629, 1003 |
| BstBAI | YACGTR | 2 cut(s) | 210, 278 |
| BstBI | TTCGAA | 1 cut(s) | 31 |
| BstC8I | GCNNGC | 1 cut(s) | 498 |
| BstDEI | CTNAG | 4 cut(s) | 160, 246, 539, 594 |
| BstEII | GGTNACC | 1 cut(s) | 1088 |
| BstF5I | GGATG | 1 cut(s) | 220 |
| BstKTI | GATC | 4 cut(s) | 481, 559, 963, 991 |
| BstMAI | GTCTC | 2 cut(s) | 163, 188 |
| BstMBI | GATC | 4 cut(s) | 478, 556, 960, 988 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 506, 854 |
| BstNSI | RCATGY | 3 cut(s) | 770, 841, 1151 |
| BstPI | GGTNACC | 1 cut(s) | 1088 |
| BstSFI | CTRYAG | 1 cut(s) | 904 |
| BstSLI | GKGCMC | 2 cut(s) | 1074, 1121 |
| BstSNI | TACGTA | 1 cut(s) | 278 |
| BstV1I | GCAGC | 2 cut(s) | 869, 890 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 940, 1168 |
| BtsCI | GGATG | 1 cut(s) | 220 |
| Cac8I | GCNNGC | 1 cut(s) | 498 |
| Csp6I | GTAC | 3 cut(s) | 232, 240, 995 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 676, 711 |
| CviAII | CATG | 4 cut(s) | 767, 838, 1148, 1216 |
| CviJI | RGCY | 8 cut(s) | 15, 257, 340, 378, 473, 736, 903, 1220 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 257, 340, 378, 473, 736, 903, 1220 |
| CviQI | GTAC | 3 cut(s) | 232, 240, 995 |
| DdeI | CTNAG | 4 cut(s) | 160, 246, 539, 594 |
| DpnI | GATC | 4 cut(s) | 480, 558, 962, 990 |
| DpnII | GATC | 4 cut(s) | 478, 556, 960, 988 |
| DraI | TTTAAA | 1 cut(s) | 727 |
| Eam1104I | CTCTTC | 3 cut(s) | 33, 629, 1003 |
| EarI | CTCTTC | 3 cut(s) | 33, 629, 1003 |
| Eco105I | TACGTA | 1 cut(s) | 278 |
| Eco31I | GGTCTC | 1 cut(s) | 188 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| Eco91I | GGTNACC | 1 cut(s) | 1088 |
| EcoO65I | GGTNACC | 1 cut(s) | 1088 |
| EcoT22I | ATGCAT | 1 cut(s) | 1149 |
| FaeI | CATG | 4 cut(s) | 770, 841, 1151, 1219 |
| FatI | CATG | 4 cut(s) | 766, 837, 1147, 1215 |
| FauNDI | CATATG | 1 cut(s) | 915 |
| FbaI | TGATCA | 3 cut(s) | 478, 556, 960 |
| Fnu4HI | GCNGC | 2 cut(s) | 858, 904 |
| FokI | GGATG | 1 cut(s) | 227 |
| Fsp4HI | GCNGC | 2 cut(s) | 858, 904 |
| FspBI | CTAG | 8 cut(s) | 116, 177, 221, 297, 336, 564, 992, 1238 |
| GluI | GCNGC | 2 cut(s) | 858, 904 |
| Hin1II | CATG | 4 cut(s) | 770, 841, 1151, 1219 |
| HinfI | GANTC | 7 cut(s) | 72, 180, 314, 395, 445, 1047, 1244 |
| HphI | GGTGA | 3 cut(s) | 323, 802, 998 |
| Hpy166II | GTNNAC | 1 cut(s) | 1119 |
| Hpy188I | TCNGA | 4 cut(s) | 163, 385, 556, 1287 |
| Hpy188III | TCNNGA | 5 cut(s) | 76, 221, 320, 1079, 1238 |
| Hpy8I | GTNNAC | 1 cut(s) | 1119 |
| HpyAV | CCTTC | 2 cut(s) | 1085, 1219 |
| HpyCH4III | ACNGT | 2 cut(s) | 752, 1101 |
| HpyCH4IV | ACGT | 2 cut(s) | 209, 277 |
| HpyCH4V | TGCA | 7 cut(s) | 509, 687, 772, 783, 906, 1119, 1147 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 506, 854 |
| HpyF3I | CTNAG | 4 cut(s) | 160, 246, 539, 594 |
| HpySE526I | ACGT | 2 cut(s) | 209, 277 |
| Hsp92II | CATG | 4 cut(s) | 770, 841, 1151, 1219 |
| Ksp22I | TGATCA | 3 cut(s) | 478, 556, 960 |
| Kzo9I | GATC | 4 cut(s) | 478, 556, 960, 988 |
| LguI | GCTCTTC | 2 cut(s) | 33, 629 |
| LpnPI | CCDG | 1 cut(s) | 742 |
| Lsp1109I | GCAGC | 2 cut(s) | 869, 890 |
| LweI | GCATC | 3 cut(s) | 648, 805, 1282 |
| MaeI | CTAG | 8 cut(s) | 116, 177, 221, 297, 336, 564, 992, 1238 |
| MaeII | ACGT | 2 cut(s) | 209, 277 |
| MaeIII | GTNAC | 3 cut(s) | 752, 1088, 1211 |
| MalI | GATC | 4 cut(s) | 480, 558, 962, 990 |
| MboI | GATC | 4 cut(s) | 478, 556, 960, 988 |
| MhlI | GDGCHC | 3 cut(s) | 28, 1074, 1121 |
| MluCI | AATT | 4 cut(s) | 55, 601, 1111, 1279 |
| MlyI | GAGTC | 1 cut(s) | 1238 |
| MmeI | TCCRAC | 1 cut(s) | 28 |
| Mph1103I | ATGCAT | 1 cut(s) | 1149 |
| MseI | TTAA | 3 cut(s) | 534, 726, 1164 |
| MslI | CAYNNNNRTG | 3 cut(s) | 711, 938, 1166 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 506, 854 |
| NdeI | CATATG | 1 cut(s) | 915 |
| NdeII | GATC | 4 cut(s) | 478, 556, 960, 988 |
| NlaIII | CATG | 4 cut(s) | 770, 841, 1151, 1219 |
| NsiI | ATGCAT | 1 cut(s) | 1149 |
| NspI | RCATGY | 3 cut(s) | 770, 841, 1151 |
| NspV | TTCGAA | 1 cut(s) | 31 |
| OliI | CACNNNNGTG | 1 cut(s) | 711 |
| PciI | ACATGT | 2 cut(s) | 766, 837 |
| PciSI | GCTCTTC | 2 cut(s) | 33, 629 |
| PfeI | GAWTC | 6 cut(s) | 72, 180, 314, 395, 445, 1047 |
| PkrI | GCNGC | 2 cut(s) | 859, 905 |
| PleI | GAGTC | 1 cut(s) | 1238 |
| PpsI | GAGTC | 1 cut(s) | 1238 |
| Ppu21I | YACGTR | 2 cut(s) | 210, 278 |
| PscI | ACATGT | 2 cut(s) | 766, 837 |
| PspEI | GGTNACC | 1 cut(s) | 1088 |
| PstI | CTGCAG | 1 cut(s) | 908 |
| RsaI | GTAC | 3 cut(s) | 233, 241, 996 |
| RsaNI | GTAC | 3 cut(s) | 232, 240, 995 |
| RseI | CAYNNNNRTG | 3 cut(s) | 711, 938, 1166 |
| SapI | GCTCTTC | 2 cut(s) | 33, 629 |
| SaqAI | TTAA | 3 cut(s) | 534, 726, 1164 |
| SatI | GCNGC | 2 cut(s) | 858, 904 |
| Sau3AI | GATC | 4 cut(s) | 478, 556, 960, 988 |
| SchI | GAGTC | 1 cut(s) | 1238 |
| SduI | GDGCHC | 3 cut(s) | 28, 1074, 1121 |
| SfaNI | GCATC | 3 cut(s) | 648, 805, 1282 |
| SfcI | CTRYAG | 1 cut(s) | 904 |
| SfuI | TTCGAA | 1 cut(s) | 31 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 711, 938, 1166 |
| SmlI | CTYRAG | 2 cut(s) | 16, 573 |
| SmoI | CTYRAG | 2 cut(s) | 16, 573 |
| SnaBI | TACGTA | 1 cut(s) | 278 |
| Sse9I | AATT | 4 cut(s) | 55, 601, 1111, 1279 |
| SspI | AATATT | 1 cut(s) | 42 |
| SspMI | CTAG | 8 cut(s) | 116, 177, 221, 297, 336, 564, 992, 1238 |
| TaaI | ACNGT | 2 cut(s) | 752, 1101 |
| TaiI | ACGT | 2 cut(s) | 212, 280 |
| TaqI | TCGA | 2 cut(s) | 31, 60 |
| TasI | AATT | 4 cut(s) | 55, 601, 1111, 1279 |
| TatI | WGTACW | 2 cut(s) | 231, 994 |
| TfiI | GAWTC | 6 cut(s) | 72, 180, 314, 395, 445, 1047 |
| Tru1I | TTAA | 3 cut(s) | 534, 726, 1164 |
| Tru9I | TTAA | 3 cut(s) | 534, 726, 1164 |
| TseI | GCWGC | 2 cut(s) | 857, 903 |
| TspDTI | ATGAA | 6 cut(s) | 180, 317, 660, 884, 891, 1039 |
| VneI | GTGCAC | 1 cut(s) | 1117 |
| XapI | RAATTY | 2 cut(s) | 55, 1279 |
| XbaI | TCTAGA | 2 cut(s) | 220, 1237 |
| XceI | RCATGY | 3 cut(s) | 770, 841, 1151 |
| XspI | CTAG | 8 cut(s) | 116, 177, 221, 297, 336, 564, 992, 1238 |
| Zsp2I | ATGCAT | 1 cut(s) | 1149 |