gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 773 |
| AccI | GTMKAC | 1 cut(s) | 757 |
| AciI | CCGC | 3 cut(s) | 699, 963, 1081 |
| AclWI | GGATC | 3 cut(s) | 80, 418, 553 |
| AcuI | CTGAAG | 2 cut(s) | 162, 203 |
| AfaI | GTAC | 3 cut(s) | 34, 831, 953 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1097 |
| AjnI | CCWGG | 1 cut(s) | 1090 |
| AleI | CACNNNNGTG | 1 cut(s) | 771 |
| AluBI | AGCT | 4 cut(s) | 248, 557, 636, 994 |
| AluI | AGCT | 4 cut(s) | 248, 557, 636, 994 |
| Alw26I | GTCTC | 1 cut(s) | 512 |
| AlwI | GGATC | 3 cut(s) | 80, 418, 553 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 926 |
| ApeKI | GCWGC | 3 cut(s) | 248, 920, 966 |
| AsuHPI | GGTGA | 3 cut(s) | 35, 428, 902 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 943, 976 |
| BanI | GGYRCC | 1 cut(s) | 773 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 715, 747 |
| BbsI | GAAGAC | 2 cut(s) | 150, 1110 |
| BbvI | GCAGC | 3 cut(s) | 235, 932, 953 |
| BccI | CCATC | 2 cut(s) | 887, 1007 |
| BciT130I | CCWGG | 1 cut(s) | 1092 |
| BclI | TGATCA | 1 cut(s) | 562 |
| BcoDI | GTCTC | 1 cut(s) | 512 |
| BfaI | CTAG | 2 cut(s) | 378, 428 |
| BfmI | CTRYAG | 2 cut(s) | 718, 967 |
| BisI | GCNGC | 4 cut(s) | 249, 921, 964, 967 |
| BlsI | GCNGC | 4 cut(s) | 250, 922, 965, 968 |
| Bme1390I | CCNGG | 1 cut(s) | 1092 |
| BmiI | GGNNCC | 2 cut(s) | 775, 1018 |
| BmrFI | CCNGG | 1 cut(s) | 1092 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BpiI | GAAGAC | 2 cut(s) | 150, 1110 |
| BpuEI | CTTGAG | 1 cut(s) | 544 |
| Bsa29I | ATCGAT | 1 cut(s) | 482 |
| BsaAI | YACGTR | 1 cut(s) | 32 |
| BsaI | GGTCTC | 1 cut(s) | 512 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1041, 1071 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1097 |
| Bse1I | ACTGG | 1 cut(s) | 662 |
| Bse3DI | GCAATG | 1 cut(s) | 1076 |
| BseBI | CCWGG | 1 cut(s) | 1092 |
| BseCI | ATCGAT | 1 cut(s) | 482 |
| BseGI | GGATG | 2 cut(s) | 208, 358 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1097 |
| BseMI | GCAATG | 1 cut(s) | 1076 |
| BseNI | ACTGG | 1 cut(s) | 662 |
| BseXI | GCAGC | 3 cut(s) | 235, 932, 953 |
| BshNI | GGYRCC | 1 cut(s) | 773 |
| BshVI | ATCGAT | 1 cut(s) | 482 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1097 |
| BsmAI | GTCTC | 1 cut(s) | 512 |
| Bso31I | GGTCTC | 1 cut(s) | 512 |
| Bsp1407I | TGTACA | 1 cut(s) | 829 |
| Bsp143I | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| BspACI | CCGC | 3 cut(s) | 699, 963, 1081 |
| BspDI | ATCGAT | 1 cut(s) | 482 |
| BspLI | GGNNCC | 2 cut(s) | 775, 1018 |
| BspMAI | CTGCAG | 2 cut(s) | 722, 971 |
| BspPI | GGATC | 3 cut(s) | 80, 418, 553 |
| BspQI | GCTCTTC | 2 cut(s) | 179, 643 |
| BspT107I | GGYRCC | 1 cut(s) | 773 |
| BspTNI | GGTCTC | 1 cut(s) | 512 |
| BsrDI | GCAATG | 1 cut(s) | 1076 |
| BsrGI | TGTACA | 1 cut(s) | 829 |
| BsrI | ACTGG | 1 cut(s) | 662 |
| BssMI | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| Bst2UI | CCWGG | 1 cut(s) | 1092 |
| Bst4CI | ACNGT | 3 cut(s) | 292, 770, 928 |
| Bst6I | CTCTTC | 2 cut(s) | 179, 643 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 248 |
| BstAUI | TGTACA | 1 cut(s) | 829 |
| BstBAI | YACGTR | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 1 cut(s) | 794 |
| BstF5I | GGATG | 2 cut(s) | 208, 358 |
| BstKTI | GATC | 6 cut(s) | 42, 75, 106, 426, 548, 565 |
| BstMAI | GTCTC | 1 cut(s) | 512 |
| BstMBI | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 248, 633, 698, 917 |
| BstNI | CCWGG | 1 cut(s) | 1092 |
| BstNSI | RCATGY | 2 cut(s) | 584, 830 |
| BstSCI | CCNGG | 1 cut(s) | 1090 |
| BstSFI | CTRYAG | 2 cut(s) | 718, 967 |
| BstSNI | TACGTA | 1 cut(s) | 32 |
| BstV1I | GCAGC | 3 cut(s) | 235, 932, 953 |
| BstV2I | GAAGAC | 2 cut(s) | 150, 1110 |
| BstX2I | RGATCY | 1 cut(s) | 545 |
| BstYI | RGATCY | 1 cut(s) | 545 |
| Bsu15I | ATCGAT | 1 cut(s) | 482 |
| BsuTUI | ATCGAT | 1 cut(s) | 482 |
| BtsCI | GGATG | 2 cut(s) | 208, 358 |
| BtsI | GCAGTG | 1 cut(s) | 25 |
| BtsIMutI | CAGTG | 2 cut(s) | 25, 775 |
| Cac8I | GCNNGC | 1 cut(s) | 794 |
| CaiI | CAGNNNCTG | 1 cut(s) | 926 |
| ClaI | ATCGAT | 1 cut(s) | 482 |
| Csp6I | GTAC | 3 cut(s) | 33, 830, 952 |
| CviAII | CATG | 4 cut(s) | 581, 827, 917, 979 |
| CviQI | GTAC | 3 cut(s) | 33, 830, 952 |
| DpnI | GATC | 6 cut(s) | 41, 74, 105, 425, 547, 564 |
| DpnII | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| DraI | TTTAAA | 1 cut(s) | 649 |
| Eam1104I | CTCTTC | 2 cut(s) | 179, 643 |
| EarI | CTCTTC | 2 cut(s) | 179, 643 |
| Eco105I | TACGTA | 1 cut(s) | 32 |
| Eco31I | GGTCTC | 1 cut(s) | 512 |
| Eco57I | CTGAAG | 2 cut(s) | 162, 203 |
| EcoRII | CCWGG | 1 cut(s) | 1090 |
| FaeI | CATG | 4 cut(s) | 584, 830, 920, 982 |
| FatI | CATG | 4 cut(s) | 580, 826, 916, 978 |
| FauNDI | CATATG | 1 cut(s) | 100 |
| FbaI | TGATCA | 1 cut(s) | 562 |
| FblI | GTMKAC | 1 cut(s) | 757 |
| Fnu4HI | GCNGC | 4 cut(s) | 249, 921, 964, 967 |
| FokI | GGATG | 2 cut(s) | 215, 365 |
| Fsp4HI | GCNGC | 4 cut(s) | 249, 921, 964, 967 |
| FspBI | CTAG | 2 cut(s) | 378, 428 |
| GluI | GCNGC | 4 cut(s) | 249, 921, 964, 967 |
| Hin1II | CATG | 4 cut(s) | 584, 830, 920, 982 |
| HindIII | AAGCTT | 2 cut(s) | 555, 992 |
| HinfI | GANTC | 5 cut(s) | 223, 397, 451, 479, 575 |
| HphI | GGTGA | 3 cut(s) | 35, 428, 902 |
| Hpy166II | GTNNAC | 1 cut(s) | 758 |
| Hpy188I | TCNGA | 6 cut(s) | 39, 52, 183, 552, 567, 877 |
| Hpy188III | TCNNGA | 3 cut(s) | 76, 140, 458 |
| Hpy8I | GTNNAC | 1 cut(s) | 758 |
| HpyAV | CCTTC | 3 cut(s) | 119, 677, 881 |
| HpyCH4III | ACNGT | 3 cut(s) | 292, 770, 928 |
| HpyCH4IV | ACGT | 1 cut(s) | 31 |
| HpyCH4V | TGCA | 8 cut(s) | 265, 491, 584, 720, 747, 843, 920, 969 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 248, 633, 698, 917 |
| HpySE526I | ACGT | 1 cut(s) | 31 |
| Hsp92II | CATG | 4 cut(s) | 584, 830, 920, 982 |
| Ksp22I | TGATCA | 1 cut(s) | 562 |
| Kzo9I | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| LguI | GCTCTTC | 2 cut(s) | 179, 643 |
| LpnPI | CCDG | 6 cut(s) | 153, 643, 753, 790, 1077, 1104 |
| Lsp1109I | GCAGC | 3 cut(s) | 235, 932, 953 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeI | CTAG | 2 cut(s) | 378, 428 |
| MaeII | ACGT | 1 cut(s) | 31 |
| MaeIII | GTNAC | 4 cut(s) | 576, 971, 1021, 1072 |
| MalI | GATC | 6 cut(s) | 41, 74, 105, 425, 547, 564 |
| MboI | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| MboII | GAAGA | 9 cut(s) | 155, 196, 281, 446, 512, 542, 630, 723, 1115 |
| MflI | RGATCY | 1 cut(s) | 545 |
| MluCI | AATT | 7 cut(s) | 87, 173, 356, 492, 868, 1002, 1052 |
| MlyI | GAGTC | 1 cut(s) | 584 |
| MnlI | CCTC | 4 cut(s) | 63, 224, 272, 623 |
| MseI | TTAA | 7 cut(s) | 45, 317, 363, 464, 540, 648, 1059 |
| MslI | CAYNNNNRTG | 1 cut(s) | 771 |
| MspR9I | CCNGG | 1 cut(s) | 1092 |
| MvaI | CCWGG | 1 cut(s) | 1092 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 248, 633, 698, 917 |
| NdeI | CATATG | 1 cut(s) | 100 |
| NdeII | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| NlaIII | CATG | 4 cut(s) | 584, 830, 920, 982 |
| NlaIV | GGNNCC | 2 cut(s) | 775, 1018 |
| NmuCI | GTSAC | 2 cut(s) | 576, 1021 |
| NspI | RCATGY | 2 cut(s) | 584, 830 |
| OliI | CACNNNNGTG | 1 cut(s) | 771 |
| PciSI | GCTCTTC | 2 cut(s) | 179, 643 |
| PfeI | GAWTC | 4 cut(s) | 223, 397, 451, 479 |
| PkrI | GCNGC | 4 cut(s) | 250, 922, 965, 968 |
| PleI | GAGTC | 1 cut(s) | 583 |
| PpsI | GAGTC | 1 cut(s) | 583 |
| Ppu21I | YACGTR | 1 cut(s) | 32 |
| Psp6I | CCWGG | 1 cut(s) | 1090 |
| PspGI | CCWGG | 1 cut(s) | 1090 |
| PspN4I | GGNNCC | 2 cut(s) | 775, 1018 |
| PstI | CTGCAG | 2 cut(s) | 722, 971 |
| PstNI | CAGNNNCTG | 1 cut(s) | 926 |
| PsuI | RGATCY | 1 cut(s) | 545 |
| RsaI | GTAC | 3 cut(s) | 34, 831, 953 |
| RsaNI | GTAC | 3 cut(s) | 33, 830, 952 |
| RseI | CAYNNNNRTG | 1 cut(s) | 771 |
| SapI | GCTCTTC | 2 cut(s) | 179, 643 |
| SaqAI | TTAA | 7 cut(s) | 45, 317, 363, 464, 540, 648, 1059 |
| SatI | GCNGC | 4 cut(s) | 249, 921, 964, 967 |
| Sau3AI | GATC | 6 cut(s) | 39, 72, 103, 423, 545, 562 |
| SchI | GAGTC | 1 cut(s) | 584 |
| ScrFI | CCNGG | 1 cut(s) | 1092 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| SfcI | CTRYAG | 2 cut(s) | 718, 967 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 771 |
| SmlI | CTYRAG | 1 cut(s) | 523 |
| SmoI | CTYRAG | 1 cut(s) | 523 |
| SnaBI | TACGTA | 1 cut(s) | 32 |
| Sse9I | AATT | 7 cut(s) | 87, 173, 356, 492, 868, 1002, 1052 |
| SsiI | CCGC | 3 cut(s) | 699, 963, 1081 |
| SspMI | CTAG | 2 cut(s) | 378, 428 |
| StyD4I | CCNGG | 1 cut(s) | 1090 |
| TaaI | ACNGT | 3 cut(s) | 292, 770, 928 |
| TaiI | ACGT | 1 cut(s) | 34 |
| TaqI | TCGA | 3 cut(s) | 340, 459, 482 |
| TasI | AATT | 7 cut(s) | 87, 173, 356, 492, 868, 1002, 1052 |
| TatI | WGTACW | 1 cut(s) | 829 |
| TauI | GCSGC | 1 cut(s) | 966 |
| TfiI | GAWTC | 4 cut(s) | 223, 397, 451, 479 |
| Tru1I | TTAA | 7 cut(s) | 45, 317, 363, 464, 540, 648, 1059 |
| Tru9I | TTAA | 7 cut(s) | 45, 317, 363, 464, 540, 648, 1059 |
| TscAI | CASTG | 2 cut(s) | 25, 775 |
| TseFI | GTSAC | 2 cut(s) | 576, 1021 |
| TseI | GCWGC | 3 cut(s) | 248, 920, 966 |
| Tsp45I | GTSAC | 2 cut(s) | 576, 1021 |
| TspDTI | ATGAA | 7 cut(s) | 82, 138, 359, 369, 419, 492, 606 |
| TspGWI | ACGGA | 1 cut(s) | 1009 |
| TspRI | CASTG | 2 cut(s) | 25, 775 |
| XceI | RCATGY | 2 cut(s) | 584, 830 |
| XmiI | GTMKAC | 1 cut(s) | 757 |
| XspI | CTAG | 2 cut(s) | 378, 428 |