Rh6DG000500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
112277 .. 114367
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG000500.1

Sequence Viewer

Length: 633 bp
ATGGTTCTACCCAGAAAGGATATAAGTGCTACAATCCTTCTACTCGGAAGTTGTATATATATTACCATGGATGTAACATTCTGTGAGCAACAATTTTTCTTTGCCCCGAAGACTTCTCTTCAGGGGGAGAGCACATCTGAAGCTGGAGAAGAGCAGTCTTCTTCAATATTGGAAGTACCAGAAGTTGTTGTGGAAGAAAGAATTGTTGTACAAGAAAGAAATCAAATGGATCCAGAAGAACCAACAACAGGAAATGAGGATCACCTAGAAGCACCAGATTCAACTGAAGACCCCCCTACTCCTACCACATCAATCCCTATTTCTCATGAGGATGCTCCTGAGGTAAGTCTCAATCCTGAACTTGAGTCAAATATTGTTCTAAATGATGAGCATGTCCTTGATCATGAGCCCAATGATATCATAGGTAATGAGGCTAACCCTGAAACAGAACCCAACACTGAAACAAGTACCAAGGAGGTGTACAATACTGAGCACCATGTGAATCTGAATCTGCATCTGCCTCGAGATGTCTACGATAGGTTTCCCGATATGGTTTTAGAGTTCCTCAACAGTCTAGTGATTGACGCTGAGGTACAAGTGGGCGCTAAGGAAGGTGCAATACTGGGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.33

Weight (kDa)

4.08

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 531
AclWI GGATC 3 cut(s) 224, 237, 267
AcuI CTGAAG 3 cut(s) 104, 159, 306
AdeI CACNNNGTG 1 cut(s) 499
AfaI GTAC 5 cut(s) 177, 210, 469, 482, 594
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 2 cut(s) 165, 282
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 2 cut(s) 134, 495
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 3 cut(s) 224, 237, 267
Ama87I CYCGRG 1 cut(s) 522
AspLEI GCGC 1 cut(s) 605
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 522
AxyI CCTNAGG 1 cut(s) 339
BamHI GGATCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 411
BarI GAAGNNNNNNTAC 1 cut(s) 603
BbsI GAAGAC 3 cut(s) 116, 150, 294
Bbv12I GWGCWC 2 cut(s) 134, 495
BbvCI CCTCAGC 1 cut(s) 588
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 266, 575
BfoI RGCGCY 1 cut(s) 606
BmeT110I CYCGRG 1 cut(s) 522
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 632
BmsI GCATC 2 cut(s) 322, 523
BmuI ACTGGG 1 cut(s) 632
BpiI GAAGAC 3 cut(s) 116, 150, 294
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 2 cut(s) 588, 606
BpuEI CTTGAG 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 66, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 627
Bse21I CCTNAGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 66, 471
BseGI GGATG 2 cut(s) 76, 337
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 3 cut(s) 330, 480, 579
BseNI ACTGG 1 cut(s) 627
BsiHKAI GWGCWC 2 cut(s) 134, 495
BsiHKCI CYCGRG 1 cut(s) 522
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 3 cut(s) 134, 411, 495
Bsp1407I TGTACA 2 cut(s) 208, 480
Bsp143I GATC 3 cut(s) 229, 259, 400
Bsp19I CCATGG 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 331, 481, 580
BspHI TCATGA 2 cut(s) 325, 403
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 3 cut(s) 224, 237, 267
BspQI GCTCTTC 1 cut(s) 144
BsrGI TGTACA 2 cut(s) 208, 480
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 66, 471
BssMI GATC 3 cut(s) 229, 259, 400
BssT1I CCWWGG 2 cut(s) 66, 471
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 2 cut(s) 123, 144
BstAUI TGTACA 2 cut(s) 208, 480
BstDEI CTNAG 4 cut(s) 339, 489, 588, 606
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 76, 337
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 3 cut(s) 232, 262, 403
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 3 cut(s) 229, 259, 400
BstNSI RCATGY 1 cut(s) 395
BstV2I GAAGAC 3 cut(s) 116, 150, 294
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 76, 337
BtsIMutI CAGTG 1 cut(s) 456
CciI TCATGA 2 cut(s) 325, 403
CfoI GCGC 1 cut(s) 605
CseI GACGC 1 cut(s) 593
Csp6I GTAC 5 cut(s) 176, 209, 468, 481, 593
CviAII CATG 5 cut(s) 67, 326, 392, 404, 497
CviJI RGCY 3 cut(s) 143, 409, 434
CviKI_1 RGCY 3 cut(s) 143, 409, 434
CviQI GTAC 5 cut(s) 176, 209, 468, 481, 593
DdeI CTNAG 4 cut(s) 339, 489, 588, 606
DpnI GATC 3 cut(s) 231, 261, 402
DpnII GATC 3 cut(s) 229, 259, 400
DraIII CACNNNGTG 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 123, 144
EarI CTCTTC 2 cut(s) 123, 144
Eco130I CCWWGG 2 cut(s) 66, 471
Eco24I GRGCYC 1 cut(s) 411
Eco32I GATATC 1 cut(s) 418
Eco57I CTGAAG 3 cut(s) 104, 159, 306
Eco81I CCTNAGG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 522
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 66, 471
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 2 cut(s) 66, 471
FaeI CATG 5 cut(s) 70, 329, 395, 407, 500
FatI CATG 5 cut(s) 66, 325, 391, 403, 496
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 531
FokI GGATG 2 cut(s) 83, 344
FriOI GRGCYC 1 cut(s) 411
FspBI CTAG 2 cut(s) 266, 575
GlaI GCGC 1 cut(s) 604
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 606
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 605
Hin1II CATG 5 cut(s) 70, 329, 395, 407, 500
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HinfI GANTC 4 cut(s) 278, 365, 502, 508
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 481, 532
Hpy188I TCNGA 3 cut(s) 47, 139, 507
Hpy188III TCNNGA 7 cut(s) 233, 326, 338, 356, 404, 524, 545
Hpy8I GTNNAC 2 cut(s) 481, 532
HpyAV CCTTC 2 cut(s) 47, 605
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4V TGCA 2 cut(s) 514, 617
HpyF3I CTNAG 4 cut(s) 339, 489, 588, 606
Hsp92II CATG 5 cut(s) 70, 329, 395, 407, 500
HspAI GCGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 229, 259, 400
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 340
LweI GCATC 2 cut(s) 322, 523
MaeI CTAG 2 cut(s) 266, 575
MaeIII GTNAC 1 cut(s) 73
MalI GATC 3 cut(s) 231, 261, 402
MboI GATC 3 cut(s) 229, 259, 400
MboII GAAGA 8 cut(s) 110, 121, 150, 153, 161, 206, 248, 299
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 3 cut(s) 134, 411, 495
MluCI AATT 2 cut(s) 92, 201
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 8 cut(s) 250, 322, 334, 424, 469, 531, 575, 583
MslI CAYNNNNRTG 1 cut(s) 330
NcoI CCATGG 1 cut(s) 66
NdeII GATC 3 cut(s) 229, 259, 400
NlaIII CATG 5 cut(s) 70, 329, 395, 407, 500
NlaIV GGNNCC 1 cut(s) 231
NspI RCATGY 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 522
PagI TCATGA 2 cut(s) 325, 403
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 278, 502, 508
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 5 cut(s) 177, 210, 469, 482, 594
RsaNI GTAC 5 cut(s) 176, 209, 468, 481, 593
RseI CAYNNNNRTG 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 144
Sau3AI GATC 3 cut(s) 229, 259, 400
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 3 cut(s) 134, 411, 495
SetI ASST 8 cut(s) 145, 267, 345, 427, 480, 542, 594, 616
SfaNI GCATC 2 cut(s) 322, 523
Sfr274I CTCGAG 1 cut(s) 522
SlaI CTCGAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 2 cut(s) 362, 522
SmoI CTYRAG 2 cut(s) 362, 522
Sse9I AATT 2 cut(s) 92, 201
SspI AATATT 2 cut(s) 168, 373
SspMI CTAG 2 cut(s) 266, 575
StyI CCWWGG 2 cut(s) 66, 471
TaaI ACNGT 1 cut(s) 572
TaqI TCGA 1 cut(s) 523
TasI AATT 2 cut(s) 92, 201
TatI WGTACW 2 cut(s) 208, 480
TfiI GAWTC 3 cut(s) 278, 502, 508
TscAI CASTG 1 cut(s) 463
TspRI CASTG 1 cut(s) 463
XceI RCATGY 1 cut(s) 395
XhoI CTCGAG 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 2 cut(s) 266, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.