FvH4_4g14641

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000106
Physical Location & Seq
Forward (+)
18334831 .. 18336905
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14641.t1

Sequence Viewer

Length: 1377 bp
ATGTACCATAGATCACACAGTAATACAATTACAGATTTCCACCGATATCAGTCTTATTATGGTATCAGAGCCTTCGTGCTCTTGAGCCTTCCAAAACATCAAAACCCTAAAAACCTTGTCGATACAATGACGAGAGAAGAACAAATACCCCAAAAAACGGATTCATCTTCATCACAAAAGGGTCCGGCATGGGAGAATTCCAATCATCCTCTCTACATCCATCACTCAGATCAACCGGGAGCAATTTTAGTCCCACAATCTCTGGTAGAAGACAATTTCAGTGCTTGGATTGAAAGCATGAACATGGCACTTCAAATCAAGAACAAAATAGGGTTTGTCAACGGAACCCTACCTAAACCCGTGAAGAATCCAGATGAGCAGAACCAATGGAATCGATGCAATATTCTAGTCAAAACCTGGCTACTTGCATCGATGTCCAAAGAAATCTCGAAAAGCTTTTCTCACTGCAAGGATGCAAGGACGGTTTGGCTTGAGCTATATGAAAGGTTTGGACAAACTAACACTGTTCAACTCTTTCACATTGAGAATTCCATTCATGATTGTACGCAGGGCTCTTCATCTGTTACAACCTTCTTCACTCAACTCAAGAGCCTTTGGGATGAGAAGGAACTCAAGAGCCTTTGGGATGAGAAGGAAGCCCTATGCAACTTTCCTGCTTGTGTTTGTAAGGCGGGAGAGGAGTTGAGATCATATGTAGAAACTCAAAACATCATGAAGTTCTTGATGGGATTAACTGATGAATTTGCTACCGTCAGAAGCAACATCATTGGCATGGATCCATTGCCAACATTGAACAAAGTGTATTCTATGTGTCTCAGACATGAAAAGCAGGCAGCGGTGTCGGCAAGCAAGTCCATTGTGCAGCCTTCAGACTCAATTGCTTTTTGTGTGAAGCAACAAAGCCATGCAGCGCATGCCATTGAGCCCCTTGCTGCGCCCCTAGCCACGCGCAGCAGCGAGCCCTTGACCGAGTCCTTTGCAGGGTATGTGCGCAAGCCGCAGCGCAACACAGGCAGCAACGATAGCAGGCCTCGCTGCGAGAAGTGTGATAAAACAAACCACACCACCGAGAACTGCCGAGCTCACCTCCGCTGCACAACATGCAACTCTCGAGGACACACTGCCGAAACCTGTCAAGCACACCTTCGTTGCTCTTTCTGCAATTTCAAGGGTCATACCTTTGAAGAATGTCGAAAAAGGAAGAATATGCAGTCTGGAGAGGGCACAAGTCGAGTCAATCACATATCGGCTCACTGTGACAATCAAGGCAACTCTGCCTCCTTTCCATTTTCTCAAGAAGACTGCAAAACTGATAGATCTCTGGAGCAAATACCAGGCCTCAAACCAAGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

459

Amino Acids

51.93

Weight (kDa)

8.44

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 74 - 120 1.2e-17 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1013
AccII CGCG 1 cut(s) 970
AciI CCGC 4 cut(s) 692, 857, 1019, 1111
AclWI GGATC 2 cut(s) 791, 804
AcsI RAATTY 3 cut(s) 196, 547, 761
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 2 cut(s) 5, 565
AfiI CCNNNNNNNGG 2 cut(s) 157, 1002
AgsI TTSAA 6 cut(s) 293, 314, 530, 814, 1189, 1205
AjnI CCWGG 2 cut(s) 416, 1354
AluBI AGCT 3 cut(s) 456, 496, 1103
AluI AGCT 3 cut(s) 456, 496, 1103
Alw21I GWGCWC 2 cut(s) 81, 1105
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 2 cut(s) 791, 804
Ama87I CYCGRG 1 cut(s) 1131
AoxI GGCC 2 cut(s) 1049, 1357
ApoI RAATTY 3 cut(s) 196, 547, 761
AspLEI GCGC 5 cut(s) 934, 958, 972, 1014, 1026
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 1097
AvaI CYCGRG 1 cut(s) 1131
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 1247
BamHI GGATCC 1 cut(s) 796
BanII GRGCYC 4 cut(s) 575, 948, 984, 1105
BarI GAAGNNNNNNTAC 2 cut(s) 129, 161
BbsI GAAGAC 2 cut(s) 276, 1326
Bbv12I GWGCWC 2 cut(s) 81, 1105
BccI CCATC 2 cut(s) 228, 739
BcgI CGANNNNNNTGC 4 cut(s) 843, 877, 980, 1014
BciT130I CCWGG 2 cut(s) 418, 1356
BcnI CCSGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 2 cut(s) 407, 962
BglII AGATCT 1 cut(s) 1337
Bme1390I CCNGG 3 cut(s) 237, 418, 1356
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 1131
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 3 cut(s) 183, 346, 798
BmrFI CCNGG 3 cut(s) 237, 418, 1356
BmsI GCATC 3 cut(s) 386, 437, 463
BpiI GAAGAC 2 cut(s) 276, 1326
BplI GAGNNNNNCTC 2 cut(s) 1092, 1124
BpmI CTGGAG 2 cut(s) 1257, 1364
BpuEI CTTGAG 5 cut(s) 103, 512, 590, 617, 1299
BpuMI CCSGG 1 cut(s) 237
Bsa29I ATCGAT 2 cut(s) 394, 431
BsaXI ACNNNNNCTCC 2 cut(s) 1283, 1313
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 1002
Bse118I RCCGGY 1 cut(s) 1371
Bse3DI GCAATG 1 cut(s) 800
BseBI CCWGG 2 cut(s) 418, 1356
BseCI ATCGAT 2 cut(s) 394, 431
BseGI GGATG 5 cut(s) 205, 216, 478, 625, 652
BseLI CCNNNNNNNGG 2 cut(s) 157, 1002
BseMI GCAATG 1 cut(s) 800
BseMII CTCAG 2 cut(s) 240, 850
BseRI GAGGAG 1 cut(s) 713
BseSI GKGCMC 1 cut(s) 1247
BsgI GTGCAG 2 cut(s) 902, 1099
Bsh1236I CGCG 1 cut(s) 970
BshFI GGCC 2 cut(s) 1051, 1359
BshVI ATCGAT 2 cut(s) 394, 431
BsiHKAI GWGCWC 2 cut(s) 81, 1105
BsiHKCI CYCGRG 1 cut(s) 1131
BsiSI CCGG 3 cut(s) 185, 236, 1372
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 157, 1002
BsmAI GTCTC 1 cut(s) 839
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 1051, 1359
BsoBI CYCGRG 1 cut(s) 1131
Bsp1286I GDGCHC 6 cut(s) 81, 575, 948, 984, 1105, 1247
Bsp143I GATC 5 cut(s) 11, 229, 707, 796, 1337
BspACI CCGC 4 cut(s) 692, 857, 1019, 1111
BspANI GGCC 2 cut(s) 1051, 1359
BspCNI CTCAG 2 cut(s) 239, 849
BspDI ATCGAT 2 cut(s) 394, 431
BspFNI CGCG 1 cut(s) 970
BspHI TCATGA 2 cut(s) 556, 732
BspLI GGNNCC 3 cut(s) 183, 346, 798
BspPI GGATC 2 cut(s) 791, 804
BspQI GCTCTTC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 1371
BssAI RCCGGY 1 cut(s) 1371
BssMI GATC 5 cut(s) 11, 229, 707, 796, 1337
Bst2UI CCWGG 2 cut(s) 418, 1356
Bst4CI ACNGT 5 cut(s) 20, 484, 526, 772, 1277
Bst6I CTCTTC 1 cut(s) 580
BstAPI GCANNNNNTGC 2 cut(s) 935, 1122
BstC8I GCNNGC 6 cut(s) 852, 868, 936, 980, 1016, 1049
BstDEI CTNAG 2 cut(s) 226, 836
BstF5I GGATG 5 cut(s) 205, 216, 478, 625, 652
BstFNI CGCG 1 cut(s) 970
BstHHI GCGC 5 cut(s) 934, 958, 972, 1014, 1026
BstKTI GATC 5 cut(s) 14, 232, 710, 799, 1340
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 5 cut(s) 11, 229, 707, 796, 1337
BstMWI GCNNNNNNNGC 9 cut(s) 863, 935, 962, 1018, 1032, 1044, 1053, 1122, 1179
BstNI CCWGG 2 cut(s) 418, 1356
BstNSI RCATGY 2 cut(s) 938, 1125
BstSCI CCNGG 3 cut(s) 235, 416, 1354
BstSLI GKGCMC 1 cut(s) 1247
BstUI CGCG 1 cut(s) 970
BstV2I GAAGAC 2 cut(s) 276, 1326
BstX2I RGATCY 2 cut(s) 796, 1337
BstYI RGATCY 2 cut(s) 796, 1337
Bsu15I ATCGAT 2 cut(s) 394, 431
BsuRI GGCC 2 cut(s) 1051, 1359
BsuTUI ATCGAT 2 cut(s) 394, 431
BtsCI GGATG 5 cut(s) 205, 216, 478, 625, 652
BtsI GCAGTG 2 cut(s) 463, 1140
BtsIMutI CAGTG 5 cut(s) 286, 463, 522, 1140, 1273
Cac8I GCNNGC 6 cut(s) 852, 868, 936, 980, 1016, 1049
CciI TCATGA 2 cut(s) 556, 732
CfoI GCGC 5 cut(s) 934, 958, 972, 1014, 1026
Cfr10I RCCGGY 1 cut(s) 1371
Cfr13I GGNCC 1 cut(s) 182
ClaI ATCGAT 2 cut(s) 394, 431
Csp6I GTAC 2 cut(s) 4, 564
CviQI GTAC 2 cut(s) 4, 564
DdeI CTNAG 2 cut(s) 226, 836
DpnI GATC 5 cut(s) 13, 231, 709, 798, 1339
DpnII GATC 5 cut(s) 11, 229, 707, 796, 1337
Eam1104I CTCTTC 1 cut(s) 580
EarI CTCTTC 1 cut(s) 580
Ecl136II GAGCTC 1 cut(s) 1103
Eco147I AGGCCT 2 cut(s) 1051, 1359
Eco24I GRGCYC 4 cut(s) 575, 948, 984, 1105
Eco32I GATATC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 1103
Eco57I CTGAAG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 1131
EcoICRI GAGCTC 1 cut(s) 1103
EcoRI GAATTC 2 cut(s) 196, 547
EcoRII CCWGG 2 cut(s) 416, 1354
EcoRV GATATC 1 cut(s) 47
EcoT38I GRGCYC 4 cut(s) 575, 948, 984, 1105
FalI AAGNNNNNCTT 2 cut(s) 1149, 1181
FaqI GGGAC 1 cut(s) 236
FauI CCCGC 1 cut(s) 685
FauNDI CATATG 1 cut(s) 712
FokI GGATG 5 cut(s) 192, 203, 485, 632, 659
FriOI GRGCYC 4 cut(s) 575, 948, 984, 1105
FspBI CTAG 2 cut(s) 407, 962
FspI TGCGCA 1 cut(s) 1013
GlaI GCGC 5 cut(s) 933, 957, 971, 1013, 1025
GsuI CTGGAG 2 cut(s) 1257, 1364
HaeIII GGCC 2 cut(s) 1051, 1359
HapII CCGG 3 cut(s) 185, 236, 1372
HhaI GCGC 5 cut(s) 934, 958, 972, 1014, 1026
Hin6I GCGC 5 cut(s) 932, 956, 970, 1012, 1024
HinP1I GCGC 5 cut(s) 932, 956, 970, 1012, 1024
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 6 cut(s) 161, 367, 391, 893, 992, 1254
HpaII CCGG 3 cut(s) 185, 236, 1372
HphI GGTGA 1 cut(s) 1097
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 5 cut(s) 68, 229, 776, 839, 892
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 7 cut(s) 82, 98, 601, 619, 646, 897, 1175
HpyCH4III ACNGT 5 cut(s) 20, 484, 526, 772, 1277
HpyF10VI GCNNNNNNNGC 9 cut(s) 863, 935, 962, 1018, 1032, 1044, 1053, 1122, 1179
HpyF3I CTNAG 2 cut(s) 226, 836
HspAI GCGC 5 cut(s) 932, 956, 970, 1012, 1024
Kzo9I GATC 5 cut(s) 11, 229, 707, 796, 1337
LguI GCTCTTC 1 cut(s) 580
LmnI GCTCC 2 cut(s) 239, 1345
LweI GCATC 3 cut(s) 386, 437, 463
MaeI CTAG 2 cut(s) 407, 962
MaeIII GTNAC 2 cut(s) 583, 1277
MalI GATC 5 cut(s) 13, 231, 709, 798, 1339
MboI GATC 5 cut(s) 11, 229, 707, 796, 1337
MboII GAAGA 9 cut(s) 149, 159, 281, 376, 567, 586, 1217, 1234, 1331
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 2 cut(s) 796, 1337
MhlI GDGCHC 6 cut(s) 81, 575, 948, 984, 1105, 1247
MluCI AATT 8 cut(s) 27, 196, 243, 274, 547, 761, 897, 1183
MlyI GAGTC 3 cut(s) 887, 1001, 1263
MnlI CCTC 8 cut(s) 219, 691, 1062, 1118, 1127, 1234, 1309, 1370
MseI TTAA 1 cut(s) 752
MslI CAYNNNNRTG 2 cut(s) 302, 791
MspA1I CMGCKG 2 cut(s) 857, 1113
MspI CCGG 3 cut(s) 185, 236, 1372
MspR9I CCNGG 3 cut(s) 237, 418, 1356
MunI CAATTG 1 cut(s) 897
MvaI CCWGG 2 cut(s) 418, 1356
MvnI CGCG 1 cut(s) 970
MwoI GCNNNNNNNGC 9 cut(s) 863, 935, 962, 1018, 1032, 1044, 1053, 1122, 1179
NciI CCSGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 712
NdeII GATC 5 cut(s) 11, 229, 707, 796, 1337
NlaIV GGNNCC 3 cut(s) 183, 346, 798
NmeAIII GCCGAG 1 cut(s) 1124
NmuCI GTSAC 1 cut(s) 1277
NsbI TGCGCA 1 cut(s) 1013
NspI RCATGY 2 cut(s) 938, 1125
PaeI GCATGC 1 cut(s) 938
PaeR7I CTCGAG 1 cut(s) 1131
PagI TCATGA 2 cut(s) 556, 732
PceI AGGCCT 2 cut(s) 1051, 1359
PciSI GCTCTTC 1 cut(s) 580
PfeI GAWTC 3 cut(s) 161, 367, 391
PflFI GACNNNGTC 1 cut(s) 991
PleI GAGTC 3 cut(s) 887, 1000, 1262
PpsI GAGTC 3 cut(s) 887, 1000, 1262
Psp124BI GAGCTC 1 cut(s) 1105
Psp6I CCWGG 2 cut(s) 416, 1354
PspGI CCWGG 2 cut(s) 416, 1354
PspN4I GGNNCC 3 cut(s) 183, 346, 798
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 2 cut(s) 796, 1337
PsyI GACNNNGTC 1 cut(s) 991
RsaI GTAC 2 cut(s) 5, 565
RsaNI GTAC 2 cut(s) 4, 564
RseI CAYNNNNRTG 2 cut(s) 302, 791
SacI GAGCTC 1 cut(s) 1105
SapI GCTCTTC 1 cut(s) 580
SaqAI TTAA 1 cut(s) 752
Sau3AI GATC 5 cut(s) 11, 229, 707, 796, 1337
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 3 cut(s) 887, 1001, 1263
ScrFI CCNGG 3 cut(s) 237, 418, 1356
SduI GDGCHC 6 cut(s) 81, 575, 948, 984, 1105, 1247
SfaNI GCATC 3 cut(s) 386, 437, 463
Sfr274I CTCGAG 1 cut(s) 1131
SinI GGWCC 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 1131
SmiMI CAYNNNNRTG 2 cut(s) 302, 791
SmlI CTYRAG 6 cut(s) 82, 491, 605, 632, 1131, 1314
SmoI CTYRAG 6 cut(s) 82, 491, 605, 632, 1131, 1314
SphI GCATGC 1 cut(s) 938
Sse9I AATT 8 cut(s) 27, 196, 243, 274, 547, 761, 897, 1183
SseBI AGGCCT 2 cut(s) 1051, 1359
SsiI CCGC 4 cut(s) 692, 857, 1019, 1111
SspI AATATT 1 cut(s) 403
SspMI CTAG 2 cut(s) 407, 962
SstI GAGCTC 1 cut(s) 1105
StuI AGGCCT 2 cut(s) 1051, 1359
StyD4I CCNGG 3 cut(s) 235, 416, 1354
TaaI ACNGT 5 cut(s) 20, 484, 526, 772, 1277
TaqI TCGA 7 cut(s) 120, 394, 431, 449, 1132, 1213, 1252
TaqII GACCGA 1 cut(s) 1004
TasI AATT 8 cut(s) 27, 196, 243, 274, 547, 761, 897, 1183
TauI GCSGC 1 cut(s) 1021
TfiI GAWTC 3 cut(s) 161, 367, 391
Tru1I TTAA 1 cut(s) 752
Tru9I TTAA 1 cut(s) 752
TscAI CASTG 5 cut(s) 286, 470, 529, 1147, 1280
TseFI GTSAC 1 cut(s) 1277
Tsp45I GTSAC 1 cut(s) 1277
TspDTI ATGAA 9 cut(s) 153, 159, 314, 516, 545, 567, 749, 774, 858
TspGWI ACGGA 2 cut(s) 173, 357
TspRI CASTG 5 cut(s) 286, 470, 529, 1147, 1280
Tth111I GACNNNGTC 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 3 cut(s) 196, 547, 761
XceI RCATGY 2 cut(s) 938, 1125
XhoI CTCGAG 1 cut(s) 1131
XspI CTAG 2 cut(s) 407, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.