Rmu_sc0000936.1_g000022
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000936.1
OG0000106
Physical Location & Seq
Reverse (-)
100791 .. 101348
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000936.1_g000022.1.cds

Sequence Viewer

Length: 558 bp
atggcatgtgttttcatcggttaccctgttggtcaaaaggcttataaattgtttaatctatccaccaaaaaatttttcactagcagagacatagtttttcatgagacagtcttcccttatgcttctgttaagcccatttcccttgtcccttcattggcccactcttcaggtcccatacccacagcgatccacgaccccacttcctttattcctcctaattctgactctgcccctgttccctcgtcttcttctccagctcccacgaccccatcccctaatttcccagaaagcatcgcgccctctccttctatcacccgccctacccaggccttgtcgacgccatcatcaccagcgcccccatccgatccaccagctccttcccttgacccacctgccccccttcgtcgctccagccgctcaacgggaccaccggtgaggttccaagattatatctgctctcaagtcacgcatccttgctccgatccgtcctcttccttgcttccaggtccaaccaagggcactcgatatccactggctaatcatgtctcctatcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

185

Amino Acids

19.59

Weight (kDa)

9.1

Isoelectric Point (pI)

77.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 417
AccI GTMKAC 1 cut(s) 335
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 316, 415
AclWI GGATC 3 cut(s) 181, 359, 476
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 338
AfiI CCNNNNNNNGG 4 cut(s) 154, 325, 421, 515
AgeI ACCGGT 1 cut(s) 430
AjnI CCWGG 2 cut(s) 324, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 257, 374
AluI AGCT 2 cut(s) 257, 374
Alw26I GTCTC 3 cut(s) 81, 98, 550
AlwI GGATC 3 cut(s) 181, 359, 476
AoxI GGCC 2 cut(s) 156, 327
ApoI RAATTY 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 430
AspLEI GCGC 2 cut(s) 298, 355
AspS9I GGNCC 4 cut(s) 157, 170, 425, 506
AsuHPI GGTGA 3 cut(s) 304, 339, 445
AvaII GGWCC 3 cut(s) 170, 425, 506
BaeGI GKGCMC 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 103, 237
BccI CCATC 3 cut(s) 277, 349, 367
BciT130I CCWGG 2 cut(s) 326, 504
BcoDI GTCTC 3 cut(s) 81, 98, 550
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
Bme1390I CCNGG 2 cut(s) 326, 504
Bme18I GGWCC 3 cut(s) 170, 425, 506
BmgT120I GGNCC 4 cut(s) 157, 170, 425, 506
BmiI GGNNCC 3 cut(s) 172, 426, 440
BmrFI CCNGG 2 cut(s) 326, 504
BmsI GCATC 2 cut(s) 300, 478
BpiI GAAGAC 2 cut(s) 103, 237
BpmI CTGGAG 2 cut(s) 237, 394
BpuEI CTTGAG 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 324, 513
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 325, 421, 515
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 537
BseBI CCWGG 2 cut(s) 326, 504
BseDI CCNNGG 2 cut(s) 324, 513
BseGI GGATG 3 cut(s) 269, 359, 469
BseLI CCNNNNNNNGG 4 cut(s) 154, 325, 421, 515
BseNI ACTGG 1 cut(s) 537
BseSI GKGCMC 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 158, 329
BshTI ACCGGT 1 cut(s) 430
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 3 cut(s) 131, 156, 438
BslI CCNNNNNNNGG 4 cut(s) 154, 325, 421, 515
BsmAI GTCTC 3 cut(s) 81, 98, 550
BsmFI GGGAC 3 cut(s) 131, 156, 438
BsnI GGCC 2 cut(s) 158, 329
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 3 cut(s) 186, 364, 481
BspACI CCGC 2 cut(s) 316, 415
BspANI GGCC 2 cut(s) 158, 329
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 3 cut(s) 172, 426, 440
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 3 cut(s) 181, 359, 476
BsrBI CCGCTC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 1 cut(s) 537
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 324, 513
BssMI GATC 3 cut(s) 186, 364, 481
BssNI GRCGYC 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 326, 504
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 169, 496
BstACI GRCGYC 1 cut(s) 338
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 3 cut(s) 269, 359, 469
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 2 cut(s) 298, 355
BstKTI GATC 3 cut(s) 189, 367, 484
BstMAI GTCTC 3 cut(s) 81, 98, 550
BstMBI GATC 3 cut(s) 186, 364, 481
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNI CCWGG 2 cut(s) 326, 504
BstNSI RCATGY 1 cut(s) 9
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 324, 502
BstSLI GKGCMC 1 cut(s) 521
BstUI CGCG 1 cut(s) 296
BstV2I GAAGAC 2 cut(s) 103, 237
BsuRI GGCC 2 cut(s) 158, 329
BtgZI GCGATG 1 cut(s) 277
BtsCI GGATG 3 cut(s) 269, 359, 469
BtsIMutI CAGTG 2 cut(s) 530, 553
BveI ACCTGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 100
CfoI GCGC 2 cut(s) 298, 355
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 4 cut(s) 157, 170, 425, 506
CseI GACGC 1 cut(s) 346
CspAI ACCGGT 1 cut(s) 430
CviAII CATG 3 cut(s) 6, 101, 542
CviJI RGCY 8 cut(s) 41, 133, 158, 257, 329, 374, 414, 536
CviKI_1 RGCY 8 cut(s) 41, 133, 158, 257, 329, 374, 414, 536
DpnI GATC 3 cut(s) 188, 366, 483
DpnII GATC 3 cut(s) 186, 364, 481
Eam1104I CTCTTC 2 cut(s) 169, 496
EarI CTCTTC 2 cut(s) 169, 496
Eco130I CCWWGG 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 329
Eco32I GATATC 1 cut(s) 527
Eco47I GGWCC 3 cut(s) 170, 425, 506
Eco57I CTGAAG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 324, 502
EcoRV GATATC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 3 cut(s) 9, 104, 545
FaiI YATR 8 cut(s) 7, 45, 92, 102, 120, 176, 450, 543
FaqI GGGAC 3 cut(s) 131, 156, 438
FatI CATG 3 cut(s) 5, 100, 541
FauI CCCGC 1 cut(s) 323
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 3 cut(s) 256, 346, 456
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 1 cut(s) 81
GlaI GCGC 2 cut(s) 297, 354
GluI GCNGC 1 cut(s) 415
GsuI CTGGAG 2 cut(s) 237, 394
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 2 cut(s) 158, 329
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 346
HhaI GCGC 2 cut(s) 298, 355
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 3 cut(s) 9, 104, 545
Hin6I GCGC 2 cut(s) 296, 353
HinP1I GCGC 2 cut(s) 296, 353
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 304, 339, 445
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 3 cut(s) 223, 364, 481
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 2 cut(s) 340, 408
HpyAV CCTTC 4 cut(s) 159, 315, 387, 410
HpyCH4III ACNGT 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 3 cut(s) 9, 104, 545
HspAI GCGC 2 cut(s) 296, 353
Kzo9I GATC 3 cut(s) 186, 364, 481
LmnI GCTCC 4 cut(s) 262, 379, 413, 482
LweI GCATC 2 cut(s) 300, 478
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 20, 463
MalI GATC 3 cut(s) 188, 366, 483
MbiI CCGCTC 1 cut(s) 417
MboI GATC 3 cut(s) 186, 364, 481
MboII GAAGA 5 cut(s) 103, 156, 237, 240, 483
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 4 cut(s) 47, 71, 217, 277
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 5 cut(s) 222, 250, 310, 429, 499
MseI TTAA 2 cut(s) 54, 129
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 326, 504
MvaI CCWGG 2 cut(s) 326, 504
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 414
NdeII GATC 3 cut(s) 186, 364, 481
NlaIII CATG 3 cut(s) 9, 104, 545
NlaIV GGNNCC 3 cut(s) 172, 426, 440
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 1 cut(s) 9
PagI TCATGA 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 400
PceI AGGCCT 1 cut(s) 329
PinAI ACCGGT 1 cut(s) 430
PkrI GCNGC 1 cut(s) 416
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 170
PsiI TTATAA 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 324, 502
PspEI GGTNACC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 324, 502
PspN4I GGNNCC 3 cut(s) 172, 426, 440
PspPI GGNCC 4 cut(s) 157, 170, 425, 506
PspPPI RGGWCCY 1 cut(s) 170
SalI GTCGAC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 54, 129
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 3 cut(s) 186, 364, 481
Sau96I GGNCC 4 cut(s) 157, 170, 425, 506
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 326, 504
SduI GDGCHC 1 cut(s) 521
SetI ASST 6 cut(s) 172, 259, 376, 394, 440, 508
SfaNI GCATC 2 cut(s) 300, 478
SgrAI CRCCGGYG 1 cut(s) 430
SinI GGWCC 3 cut(s) 170, 425, 506
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 4 cut(s) 47, 71, 217, 277
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 2 cut(s) 316, 415
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 324, 502
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 335, 523
TasI AATT 4 cut(s) 47, 71, 217, 277
TauI GCSGC 1 cut(s) 417
Tru1I TTAA 2 cut(s) 54, 129
Tru9I TTAA 2 cut(s) 54, 129
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 3 cut(s) 4, 89, 141
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 1 cut(s) 537
VpaK11BI GGWCC 3 cut(s) 170, 425, 506
XapI RAATTY 1 cut(s) 71
XceI RCATGY 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.