Rw7G025880

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000106
Physical Location & Seq
Reverse (-)
32725589 .. 32727138
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G025880.1

Sequence Viewer

Length: 1494 bp
ATGCCAGGGGACGAAGAAAGAAAGGTCGTTCAACACGACAACTCTTCGACTACGCTGACGATGTCAGAACCTTGGGAAAATCCCAATCATCCTTTGTTCATTCATCATTCTGATCAGCCTGGAGCGGTCCTTGTTGCACAGCCTTTGGTGGAAGACAATTATACCACCTGGGCTCAGTCTATGAACATGGCCCTCACAATCAAAAACAAAAAGGGATTTATTGATGGCACAAACCAACGATCAACCCAGAGAGTTGAAGAACAGATGCAATGGGACCGGTGCAATACTTTGGTTAAAACCTGGTTGCTCGGGTCTATGTCCAAAGAGATATCTAGTAGTGTCATTCACTGCAAGACTGCAAAAGGCATGTGGGAGGAGCTGAAAGAAAGGTTTTCCCACACTAATACGGTACAATTATTCCATATTGAGAATGCTATACATGATTGTGAACAGGGTGCTAGCTCTGTGACTACTTTCTTTACCAAAATTAAAGGCTTCTGGGATGAGAAAGATGCCCTTTGTGAGATTCCTCCGTGCACTTGTGAAGCATCCAAGGAAATCAAGGATTATATGGATACACAGAAGACAATGAAATTTTTAATGGGGCTTAATGACAATTTTGCAACAATTCGCAGCAGTGTGGTGAACATGGAGCCCTTTCCCACCGTCAACAAAGCATATTCAATGGCACTCCGTCATGAGAAACAAGCAGAGTTGTCTAGTGGGAAGGCTTTAGTGCAACCAGAAGCAGCAGCATTTGTGGTGAAACGGAGCAATCGTGATTTTGAAACTATCGAAGGAGGAGTCAAATGTGAAAAATGCAACAAGACAAATCATTCCACTAAAAATTGTCGTGCTCATCTCAAATGCAGTTTCTGCAATTTGAGGTACCATACCTTCAAGTATTGTCGAAAAAGAAAGGCTCTGATGGGGGAAGGTCAAGGGAGCTCCAAAGGAAATAATGACTGCCAGAAATTCTTAGGGCTCATCAAAGATAAGGCCACTACTACCACTGTTAATCAAGTTGGTAACATCCCAAACTATGAAGAACTTTCAGGTAAAACTTATCGTATGAGTCAAAATGGTAAAGAAATCATATGGATTCTAGATAGTGGAGCTAGTGATCACATAGTTTGCCATTCATATATTCTCACTTCCTTAAAGCCTGTAGTCAATCGCCTTGTTAAATTGCTGGATGGCACCACGGCTCAAGTCACACATGTTGGAAAAGTTGTCTTCTCACCTCATTTCATTCTTCATAATGTCCTTTGTGTCCCGTTCTTTTATTTGAACCTGATCTCCATTAGCAAATTAGCTTTCGATTCCTTTTATATAACAATATTTCTCAGACAAATTTGTTTTATACAGGACCTACGATCGGGGAAGATGATTGGGACGGGAACTGAGAGGGAAAGATTGTACTGTCTCGACCTGATCAAGAAAGGAACATGCAATGTCTTCAAGGTGTATTTTCCTAGGCTACCCCCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

497

Amino Acids

56.47

Weight (kDa)

8.79

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 35 - 77 7e-16 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 367 - 439 2.5e-13 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 888
AccB1I GGYRCC 2 cut(s) 888, 1199
AccBSI CCGCTC 1 cut(s) 125
AciI CCGC 1 cut(s) 125
AcsI RAATTY 3 cut(s) 593, 974, 1353
AfaI GTAC 3 cut(s) 411, 890, 1421
AfiI CCNNNNNNNGG 1 cut(s) 1378
AflIII ACRYGT 1 cut(s) 1219
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 7 cut(s) 32, 257, 684, 788, 901, 1291, 1462
AjnI CCWGG 4 cut(s) 4, 118, 167, 299
AloI GAACNNNNNNTCC 2 cut(s) 1283, 1315
AluBI AGCT 5 cut(s) 379, 462, 948, 1118, 1316
AluI AGCT 5 cut(s) 379, 462, 948, 1118, 1316
Alw21I GWGCWC 3 cut(s) 539, 859, 950
Alw26I GTCTC 1 cut(s) 1430
Alw44I GTGCAC 1 cut(s) 535
AlwNI CAGNNNCTG 1 cut(s) 876
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 189, 999
ApaLI GTGCAC 1 cut(s) 535
ApeKI GCWGC 3 cut(s) 633, 749, 752
ApoI RAATTY 3 cut(s) 593, 974, 1353
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AsiGI ACCGGT 1 cut(s) 276
Asp718I GGTACC 1 cut(s) 888
AspA2I CCTAGG 1 cut(s) 1475
AspS9I GGNCC 4 cut(s) 127, 190, 274, 1369
AsuHPI GGTGA 3 cut(s) 655, 775, 1233
AsuNHI GCTAGC 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 3 cut(s) 127, 274, 1369
AvrII CCTAGG 1 cut(s) 1475
BaeGI GKGCMC 1 cut(s) 539
BanI GGYRCC 2 cut(s) 888, 1199
BanII GRGCYC 4 cut(s) 175, 657, 950, 987
BarI GAAGNNNNNNTAC 2 cut(s) 881, 913
BbsI GAAGAC 4 cut(s) 159, 590, 1228, 1450
Bbv12I GWGCWC 3 cut(s) 539, 859, 950
BbvI GCAGC 3 cut(s) 645, 761, 764
BccI CCATC 3 cut(s) 218, 922, 1190
BceAI ACGGC 1 cut(s) 1221
BciT130I CCWGG 4 cut(s) 6, 120, 169, 301
BciVI GTATCC 1 cut(s) 568
BclI TGATCA 3 cut(s) 112, 1123, 1434
BcoDI GTCTC 1 cut(s) 1430
BfaI CTAG 6 cut(s) 333, 459, 720, 1106, 1119, 1476
BfmI CTRYAG 1 cut(s) 1167
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 3 cut(s) 634, 750, 753
BlnI CCTAGG 1 cut(s) 1475
BlsI GCNGC 3 cut(s) 635, 751, 754
Bme1390I CCNGG 4 cut(s) 6, 120, 169, 301
Bme18I GGWCC 3 cut(s) 127, 274, 1369
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 4 cut(s) 127, 190, 274, 1369
BmiI GGNNCC 4 cut(s) 275, 654, 890, 1201
BmrFI CCNGG 4 cut(s) 6, 120, 169, 301
BmsI GCATC 3 cut(s) 255, 502, 557
BmtI GCTAGC 1 cut(s) 462
BpiI GAAGAC 4 cut(s) 159, 590, 1228, 1450
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 1194
BsaJI CCNNGG 6 cut(s) 5, 71, 168, 552, 1203, 1475
BsaWI WCCGGW 1 cut(s) 276
BsaXI ACNNNNNCTCC 4 cut(s) 763, 793, 1283, 1313
Bsc4I CCNNNNNNNGG 1 cut(s) 1378
Bse118I RCCGGY 1 cut(s) 276
Bse3DI GCAATG 2 cut(s) 275, 1459
BseBI CCWGG 4 cut(s) 6, 120, 169, 301
BseDI CCNNGG 6 cut(s) 5, 71, 168, 552, 1203, 1475
BseGI GGATG 5 cut(s) 88, 508, 548, 1032, 1201
BseLI CCNNNNNNNGG 1 cut(s) 1378
BseMI GCAATG 2 cut(s) 275, 1459
BseMII CTCAG 3 cut(s) 188, 1360, 1395
BseRI GAGGAG 2 cut(s) 389, 816
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 3 cut(s) 645, 761, 764
Bsh1285I CGRYCG 1 cut(s) 1379
BshFI GGCC 2 cut(s) 191, 1001
BshNI GGYRCC 2 cut(s) 888, 1199
BshTI ACCGGT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 1379
BsiHKAI GWGCWC 3 cut(s) 539, 859, 950
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 4 cut(s) 23, 287, 1259, 1408
BslI CCNNNNNNNGG 1 cut(s) 1378
BsmAI GTCTC 1 cut(s) 1430
BsmFI GGGAC 4 cut(s) 23, 287, 1259, 1408
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 2 cut(s) 191, 1001
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 6 cut(s) 175, 539, 657, 859, 950, 987
Bsp143I GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
BspACI CCGC 1 cut(s) 125
BspANI GGCC 2 cut(s) 191, 1001
BspCNI CTCAG 3 cut(s) 187, 1359, 1396
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 4 cut(s) 275, 654, 890, 1201
BspOI GCTAGC 1 cut(s) 462
BspT107I GGYRCC 2 cut(s) 888, 1199
BsrBI CCGCTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 275, 1459
BsrFI RCCGGY 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 6 cut(s) 5, 71, 168, 552, 1203, 1475
BssMI GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
BssT1I CCWWGG 3 cut(s) 71, 552, 1475
Bst2UI CCWGG 4 cut(s) 6, 120, 169, 301
Bst4CI ACNGT 5 cut(s) 409, 667, 1015, 1424, 1491
Bst6I CTCTTC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 876
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 4 cut(s) 174, 979, 1346, 1404
BstDSI CCRYGG 1 cut(s) 1203
BstF5I GGATG 5 cut(s) 88, 508, 548, 1032, 1201
BstKTI GATC 6 cut(s) 115, 242, 1126, 1299, 1379, 1437
BstMAI GTCTC 1 cut(s) 1430
BstMBI GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
BstMCI CGRYCG 1 cut(s) 1379
BstMWI GCNNNNNNNGC 1 cut(s) 876
BstNI CCWGG 4 cut(s) 6, 120, 169, 301
BstNSI RCATGY 3 cut(s) 370, 1223, 1452
BstSCI CCNGG 4 cut(s) 4, 118, 167, 299
BstSFI CTRYAG 1 cut(s) 1167
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 3 cut(s) 645, 761, 764
BstV2I GAAGAC 4 cut(s) 159, 590, 1228, 1450
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 2 cut(s) 191, 1001
BtgI CCRYGG 1 cut(s) 1203
BtsCI GGATG 5 cut(s) 88, 508, 548, 1032, 1201
BtsI GCAGTG 2 cut(s) 346, 643
BtsIMutI CAGTG 3 cut(s) 346, 643, 1011
Cac8I GCNNGC 1 cut(s) 460
CaiI CAGNNNCTG 1 cut(s) 876
CciI TCATGA 1 cut(s) 697
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 4 cut(s) 127, 190, 274, 1369
CsiI ACCWGGT 1 cut(s) 299
Csp6I GTAC 3 cut(s) 410, 889, 1420
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 7 cut(s) 187, 367, 440, 649, 698, 1220, 1449
CviQI GTAC 3 cut(s) 410, 889, 1420
DdeI CTNAG 4 cut(s) 174, 979, 1346, 1404
DpnI GATC 6 cut(s) 114, 241, 1125, 1298, 1378, 1436
DpnII GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 948
Eco130I CCWWGG 3 cut(s) 71, 552, 1475
Eco24I GRGCYC 4 cut(s) 175, 657, 950, 987
Eco32I GATATC 1 cut(s) 330
Eco47I GGWCC 3 cut(s) 127, 274, 1369
Eco53kI GAGCTC 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 948
EcoO109I RGGNCCY 1 cut(s) 1369
EcoRII CCWGG 4 cut(s) 4, 118, 167, 299
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 3 cut(s) 71, 552, 1475
EcoT38I GRGCYC 4 cut(s) 175, 657, 950, 987
ErhI CCWWGG 3 cut(s) 71, 552, 1475
FaeI CATG 7 cut(s) 190, 370, 443, 652, 701, 1223, 1452
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 4 cut(s) 23, 287, 1259, 1408
FatI CATG 7 cut(s) 186, 366, 439, 648, 697, 1219, 1448
FauNDI CATATG 1 cut(s) 1097
FbaI TGATCA 3 cut(s) 112, 1123, 1434
Fnu4HI GCNGC 3 cut(s) 634, 750, 753
FokI GGATG 5 cut(s) 75, 515, 535, 1019, 1208
FriOI GRGCYC 4 cut(s) 175, 657, 950, 987
Fsp4HI GCNGC 3 cut(s) 634, 750, 753
FspBI CTAG 6 cut(s) 333, 459, 720, 1106, 1119, 1476
GluI GCNGC 3 cut(s) 634, 750, 753
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 2 cut(s) 191, 1001
HapII CCGG 1 cut(s) 277
Hin1II CATG 7 cut(s) 190, 370, 443, 652, 701, 1223, 1452
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 5 cut(s) 526, 804, 1075, 1102, 1322
HpaII CCGG 1 cut(s) 277
HphI GGTGA 3 cut(s) 655, 775, 1233
Hpy166II GTNNAC 4 cut(s) 449, 537, 646, 670
Hpy188I TCNGA 4 cut(s) 67, 112, 927, 1349
Hpy188III TCNNGA 5 cut(s) 698, 779, 1106, 1427, 1438
Hpy8I GTNNAC 4 cut(s) 449, 537, 646, 670
HpyAV CCTTC 4 cut(s) 721, 791, 907, 929
HpyCH4III ACNGT 5 cut(s) 409, 667, 1015, 1424, 1491
HpyF10VI GCNNNNNNNGC 1 cut(s) 876
HpyF3I CTNAG 4 cut(s) 174, 979, 1346, 1404
Hsp92II CATG 7 cut(s) 190, 370, 443, 652, 701, 1223, 1452
KpnI GGTACC 1 cut(s) 892
Ksp22I TGATCA 3 cut(s) 112, 1123, 1434
Kzo9I GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
LmnI GCTCC 7 cut(s) 122, 376, 652, 771, 945, 953, 1115
Lsp1109I GCAGC 3 cut(s) 645, 761, 764
LweI GCATC 3 cut(s) 255, 502, 557
MabI ACCWGGT 1 cut(s) 299
MaeI CTAG 6 cut(s) 333, 459, 720, 1106, 1119, 1476
MaeIII GTNAC 3 cut(s) 466, 1028, 1213
MalI GATC 6 cut(s) 114, 241, 1125, 1298, 1378, 1436
MbiI CCGCTC 1 cut(s) 125
MboI GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
MhlI GDGCHC 6 cut(s) 175, 539, 657, 859, 950, 987
MlyI GAGTC 2 cut(s) 813, 1084
MmeI TCCRAC 1 cut(s) 1204
MnlI CCTC 7 cut(s) 203, 367, 540, 794, 879, 1254, 1401
MseI TTAA 7 cut(s) 294, 489, 599, 609, 1017, 1160, 1185
MslI CAYNNNNRTG 1 cut(s) 444
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 4 cut(s) 6, 120, 169, 301
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 4 cut(s) 6, 120, 169, 301
MwoI GCNNNNNNNGC 1 cut(s) 876
NdeI CATATG 1 cut(s) 1097
NdeII GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 7 cut(s) 190, 370, 443, 652, 701, 1223, 1452
NlaIV GGNNCC 4 cut(s) 275, 654, 890, 1201
NmuCI GTSAC 2 cut(s) 466, 1213
NspI RCATGY 3 cut(s) 370, 1223, 1452
PagI TCATGA 1 cut(s) 697
PciI ACATGT 1 cut(s) 1219
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 775
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 3 cut(s) 526, 1102, 1322
PflFI GACNNNGTC 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 3 cut(s) 635, 751, 754
Ple19I CGATCG 1 cut(s) 1379
PleI GAGTC 2 cut(s) 812, 1083
PpsI GAGTC 2 cut(s) 812, 1083
PpuMI RGGWCCY 1 cut(s) 1369
PscI ACATGT 1 cut(s) 1219
Psp124BI GAGCTC 1 cut(s) 950
Psp5II RGGWCCY 1 cut(s) 1369
Psp6I CCWGG 4 cut(s) 4, 118, 167, 299
PspGI CCWGG 4 cut(s) 4, 118, 167, 299
PspN4I GGNNCC 4 cut(s) 275, 654, 890, 1201
PspPI GGNCC 4 cut(s) 127, 190, 274, 1369
PspPPI RGGWCCY 1 cut(s) 1369
PstNI CAGNNNCTG 1 cut(s) 876
PsyI GACNNNGTC 1 cut(s) 61
PvuI CGATCG 1 cut(s) 1379
RsaI GTAC 3 cut(s) 411, 890, 1421
RsaNI GTAC 3 cut(s) 410, 889, 1420
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 950
SaqAI TTAA 7 cut(s) 294, 489, 599, 609, 1017, 1160, 1185
SatI GCNGC 3 cut(s) 634, 750, 753
Sau3AI GATC 6 cut(s) 112, 239, 1123, 1296, 1376, 1434
Sau96I GGNCC 4 cut(s) 127, 190, 274, 1369
SchI GAGTC 2 cut(s) 813, 1084
ScrFI CCNGG 4 cut(s) 6, 120, 169, 301
SduI GDGCHC 6 cut(s) 175, 539, 657, 859, 950, 987
SexAI ACCWGGT 1 cut(s) 299
SfaNI GCATC 3 cut(s) 255, 502, 557
SfcI CTRYAG 1 cut(s) 1167
SinI GGWCC 3 cut(s) 127, 274, 1369
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 1209
SmoI CTYRAG 1 cut(s) 1209
SsiI CCGC 1 cut(s) 125
SspI AATATT 1 cut(s) 1341
SspMI CTAG 6 cut(s) 333, 459, 720, 1106, 1119, 1476
SstI GAGCTC 1 cut(s) 950
StyD4I CCNGG 4 cut(s) 4, 118, 167, 299
StyI CCWWGG 3 cut(s) 71, 552, 1475
TaaI ACNGT 5 cut(s) 409, 667, 1015, 1424, 1491
TaqI TCGA 5 cut(s) 47, 795, 910, 1320, 1428
TatI WGTACW 1 cut(s) 1419
TfiI GAWTC 3 cut(s) 526, 1102, 1322
Tru1I TTAA 7 cut(s) 294, 489, 599, 609, 1017, 1160, 1185
Tru9I TTAA 7 cut(s) 294, 489, 599, 609, 1017, 1160, 1185
TscAI CASTG 3 cut(s) 353, 643, 1018
TseFI GTSAC 2 cut(s) 466, 1213
TseI GCWGC 3 cut(s) 633, 749, 752
Tsp45I GTSAC 2 cut(s) 466, 1213
TspDTI ATGAA 8 cut(s) 88, 92, 197, 605, 1059, 1131, 1240, 1247
TspGWI ACGGA 3 cut(s) 522, 683, 784
TspRI CASTG 3 cut(s) 353, 643, 1018
Tth111I GACNNNGTC 1 cut(s) 61
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 127, 274, 1369
XapI RAATTY 3 cut(s) 593, 974, 1353
XbaI TCTAGA 1 cut(s) 1105
XceI RCATGY 3 cut(s) 370, 1223, 1452
XmaJI CCTAGG 1 cut(s) 1475
XspI CTAG 6 cut(s) 333, 459, 720, 1106, 1119, 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.