Rw2G005280

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000106
Physical Location & Seq
Forward (+)
4988574 .. 4996089
7516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005280.1

Sequence Viewer

Length: 1635 bp
ATGAGTCAAACTATCATCAATGAGAAAATTTTGAGGTCTATGACTTCAAAATTTGACTATGTGGTTTGTTCCATCGAAGAATCCAATGACATGGATACACTGACCATAGATGAGTTGCAAAGCAGCTTGTTTGTTCATGAGCAAAGGATGAATGGTCACATAGAGGAGGAACAAGCTCTAAAGGTCACGCATGAAGAGAGAGCAGGAAGAGGAAGGCGACGAGGAATGGTCAAAGGCAGAGGAAGAGGAAGAGGAAGGGGAAGGGGAAGACAACCCTTTAATAAAGCCATTATCGAGTGTTTCAAATGTCACAAGTTAGGGCACTTTCAATATGAGTGCCCTAATTGGGAGAAAGGGGCTAACTACGCTGAATTAGATAAAGAAGAAGAACTACTGCTAATGTCCTATGTGGAGCTTAATCAAACTGTGAAACTTGGCAATAATTCTAGAATGGCAGTTGTGGGGAGAGGCAACGTTCGTTTGCAAGTAAATGGCCTTACTCAGGTAATCTCAGATGTCTATTATATTTCTGAGCTTAGGAATAATTTGTTGAGCGTAGGACAACTTCAAGAAAAGGGTGTAGCTACTTTAATTCAGCATGGGAAGTGTCGAGTTTTTCATCCTAGAAAGGGATTAATTATGCAAACAGAAATGAGTGCAAATAGAATGTTTGTTCTACGAGCTGCCATGGTCCCAAAGGCTCCTACATGTTTCCAGACTGTTACAGAGAATGAATCTCAACTATGGCACTGCCGATTTGGTCACTTGAGCTTCAAAGGCCTGAGGACGCTTTCGTATAAGAAGATGGTTAATGGATTGCCTTCACTCAAAACTGTGCAAAACGGAGTTGCTGAGAGGAAAAATAAGACAGTGATGAATATGGTACGTTGCATGCTTTCTGAAAAGCAAGTGCCTAAAGTTTTCTGGCCTGAAGCAGTGAGATGGAGTGTGCATGTTCTTAATCGATGTCCTACTTTAGTGGTAAAAGATGTAACTCTAGAGGAAGCTTGGAGTGGTGTAAAGCCTACGGTGGACTATTTCAGAATTTTTGGTTGTTTGGCTCACGTACATGTACCAAACCAGAAGAGGAGTAAATTGGATGATAAAAGCCTTAAGTGTGTATTGTTGGGAGTAAGCGATGAATCAAAAGCTTATAGACTGTTTGATCCGGTTTCAAGGAAGATTATTGTTAGCAGGGATGTGGTTTTTGAAGAAAATGAATGTTGGAACTGGGGCAGAAGCAAAGAAGAAGTGAGCTTAGATAATGAAGAAGAAGCAGCAGTTGACGAAAATGAAGAAAATGGTACTGGTTCAAATGCAAGTGATTCAAATGGCATCAACTCGAGCTCAAGCTCAAGTGCAACAGGTTCACCTTCTAGTGAGGTACATGGAGAAGTTCTACAGAGTCCAGATGAAGGGAGGGTAAGAAGAGCTCCTCTCTGGATGCAAGACTATGAGACCGGTGAAGGCTTGTCAGAAGATGAAGGTCTGAATGCTATGATGATGCTCGCCGAGGATGATCCAATCACATTTGATGATCCTGTCAAGAGCAAGAAGTGGAGGGATGCAATGAATGCAGAGATTGAGTCGATTGAGAAAAACAAGACTTGGGAGCTAACTACTCTACCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

544

Amino Acids

61.7

Weight (kDa)

6.41

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 134 - 194 1.1e-14 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 223 - 277 3.6e-11 GAG-pre-integrase domain
SH3_retrovirus PF25597 352 - 415 6e-27 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 474
AclWI GGATC 3 cut(s) 1160, 1514, 1532
AcsI RAATTY 3 cut(s) 27, 50, 1044
AcuI CTGAAG 1 cut(s) 951
AfaI GTAC 5 cut(s) 885, 1068, 1074, 1306, 1386
AfiI CCNNNNNNNGG 4 cut(s) 346, 502, 629, 1415
AflII CTTAAG 1 cut(s) 1112
AflIII ACRYGT 2 cut(s) 707, 1069
AgeI ACCGGT 1 cut(s) 1460
AgsI TTSAA 9 cut(s) 48, 304, 329, 569, 775, 1176, 1211, 1314, 1329
Alw21I GWGCWC 2 cut(s) 1349, 1435
Alw26I GTCTC 1 cut(s) 1451
AlwI GGATC 3 cut(s) 1160, 1514, 1532
Ama87I CYCGRG 1 cut(s) 1342
AoxI GGCC 3 cut(s) 493, 778, 926
ApeKI GCWGC 3 cut(s) 123, 683, 1277
ApoI RAATTY 3 cut(s) 27, 50, 1044
AseI ATTAAT 1 cut(s) 635
AsiGI ACCGGT 1 cut(s) 1460
AspS9I GGNCC 1 cut(s) 691
AsuHPI GGTGA 2 cut(s) 1362, 1475
AvaI CYCGRG 1 cut(s) 1342
AvaII GGWCC 1 cut(s) 691
AxyI CCTNAGG 1 cut(s) 782
BaeGI GKGCMC 2 cut(s) 324, 341
BanII GRGCYC 2 cut(s) 1349, 1435
BarI GAAGNNNNNNTAC 4 cut(s) 375, 407, 549, 581
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 1349, 1435
BbvI GCAGC 3 cut(s) 135, 670, 1289
BccI CCATC 3 cut(s) 80, 799, 936
BciVI GTATCC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 1451
BfaI CTAG 4 cut(s) 447, 624, 998, 1377
BfmI CTRYAG 1 cut(s) 1400
BfrI CTTAAG 1 cut(s) 1112
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 3 cut(s) 124, 684, 1278
BlsI GCNGC 3 cut(s) 125, 685, 1279
Bme18I GGWCC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 1342
BmgT120I GGNCC 1 cut(s) 691
BmiI GGNNCC 2 cut(s) 693, 702
BmrI ACTGGG 1 cut(s) 1240
BmsI GCATC 4 cut(s) 1344, 1434, 1494, 1555
BmuI ACTGGG 1 cut(s) 1240
BpiI GAAGAC 1 cut(s) 274
BplI GAGNNNNNCTC 2 cut(s) 1422, 1454
Bpu10I CCTNAGC 1 cut(s) 536
BpuEI CTTGAG 3 cut(s) 787, 1333, 1339
Bsa29I ATCGAT 1 cut(s) 964
BsaAI YACGTR 1 cut(s) 1066
BsaI GGTCTC 1 cut(s) 1451
BsaJI CCNNGG 2 cut(s) 687, 1512
BsaWI WCCGGW 2 cut(s) 1168, 1460
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 502, 629, 1415
Bse118I RCCGGY 1 cut(s) 1460
Bse1I ACTGG 2 cut(s) 1235, 1312
Bse21I CCTNAGG 1 cut(s) 782
Bse3DI GCAATG 1 cut(s) 1575
BseCI ATCGAT 1 cut(s) 964
BseDI CCNNGG 2 cut(s) 687, 1512
BseGI GGATG 7 cut(s) 153, 619, 1105, 1204, 1449, 1522, 1570
BseLI CCNNNNNNNGG 4 cut(s) 346, 502, 629, 1415
BseMI GCAATG 1 cut(s) 1575
BseMII CTCAG 5 cut(s) 515, 522, 525, 773, 843
BseNI ACTGG 2 cut(s) 1235, 1312
BseRI GAGGAG 3 cut(s) 179, 1102, 1425
BseSI GKGCMC 2 cut(s) 324, 341
BseXI GCAGC 3 cut(s) 135, 670, 1289
BshFI GGCC 3 cut(s) 495, 780, 928
BshTI ACCGGT 1 cut(s) 1460
BshVI ATCGAT 1 cut(s) 964
BsiHKAI GWGCWC 2 cut(s) 1349, 1435
BsiHKCI CYCGRG 1 cut(s) 1342
BsiSI CCGG 2 cut(s) 1169, 1461
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 4 cut(s) 346, 502, 629, 1415
BsmAI GTCTC 1 cut(s) 1451
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 2 cut(s) 1498, 1579
BsnI GGCC 3 cut(s) 495, 780, 928
Bso31I GGTCTC 1 cut(s) 1451
BsoBI CYCGRG 1 cut(s) 1342
Bsp1286I GDGCHC 4 cut(s) 324, 341, 1349, 1435
Bsp143I GATC 3 cut(s) 1165, 1519, 1537
Bsp19I CCATGG 1 cut(s) 687
BspANI GGCC 3 cut(s) 495, 780, 928
BspCNI CTCAG 5 cut(s) 514, 523, 524, 774, 844
BspDI ATCGAT 1 cut(s) 964
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 693, 702
BspPI GGATC 3 cut(s) 1160, 1514, 1532
BspQI GCTCTTC 1 cut(s) 1423
BspTI CTTAAG 1 cut(s) 1112
BspTNI GGTCTC 1 cut(s) 1451
BsrDI GCAATG 1 cut(s) 1575
BsrFI RCCGGY 1 cut(s) 1460
BsrI ACTGG 2 cut(s) 1235, 1312
BssAI RCCGGY 1 cut(s) 1460
BssECI CCNNGG 2 cut(s) 687, 1512
BssMI GATC 3 cut(s) 1165, 1519, 1537
BssT1I CCWWGG 1 cut(s) 687
Bst4CI ACNGT 6 cut(s) 427, 721, 835, 871, 1030, 1161
Bst6I CTCTTC 6 cut(s) 189, 202, 238, 244, 1079, 1423
BstAFI CTTAAG 1 cut(s) 1112
BstAPI GCANNNNNTGC 1 cut(s) 1574
BstBAI YACGTR 1 cut(s) 1066
BstC8I GCNNGC 2 cut(s) 893, 1509
BstDEI CTNAG 7 cut(s) 501, 511, 531, 536, 782, 852, 1258
BstDSI CCRYGG 1 cut(s) 687
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 7 cut(s) 153, 619, 1105, 1204, 1449, 1522, 1570
BstKTI GATC 3 cut(s) 1168, 1522, 1540
BstMAI GTCTC 1 cut(s) 1451
BstMBI GATC 3 cut(s) 1165, 1519, 1537
BstMWI GCNNNNNNNGC 3 cut(s) 365, 777, 1574
BstNSI RCATGY 4 cut(s) 711, 895, 956, 1073
BstSFI CTRYAG 1 cut(s) 1400
BstSLI GKGCMC 2 cut(s) 324, 341
BstV1I GCAGC 3 cut(s) 135, 670, 1289
BstV2I GAAGAC 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 91
Bsu15I ATCGAT 1 cut(s) 964
Bsu36I CCTNAGG 1 cut(s) 782
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 3 cut(s) 495, 780, 928
BsuTUI ATCGAT 1 cut(s) 964
BtgI CCRYGG 1 cut(s) 687
BtgZI GCGATG 1 cut(s) 1152
BtsCI GGATG 7 cut(s) 153, 619, 1105, 1204, 1449, 1522, 1570
BtsI GCAGTG 2 cut(s) 748, 942
BtsIMutI CAGTG 4 cut(s) 98, 748, 876, 942
Cac8I GCNNGC 2 cut(s) 893, 1509
CciI TCATGA 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 1460
Cfr13I GGNCC 1 cut(s) 691
ClaI ATCGAT 1 cut(s) 964
CseI GACGC 1 cut(s) 796
Csp6I GTAC 5 cut(s) 884, 1067, 1073, 1305, 1385
CspAI ACCGGT 1 cut(s) 1460
CviQI GTAC 5 cut(s) 884, 1067, 1073, 1305, 1385
DdeI CTNAG 7 cut(s) 501, 511, 531, 536, 782, 852, 1258
DpnI GATC 3 cut(s) 1167, 1521, 1539
DpnII GATC 3 cut(s) 1165, 1519, 1537
Eam1104I CTCTTC 6 cut(s) 189, 202, 238, 244, 1079, 1423
EarI CTCTTC 6 cut(s) 189, 202, 238, 244, 1079, 1423
Ecl136II GAGCTC 2 cut(s) 1347, 1433
Eco130I CCWWGG 1 cut(s) 687
Eco147I AGGCCT 1 cut(s) 780
Eco24I GRGCYC 2 cut(s) 1349, 1435
Eco31I GGTCTC 1 cut(s) 1451
Eco47I GGWCC 1 cut(s) 691
Eco53kI GAGCTC 2 cut(s) 1347, 1433
Eco57I CTGAAG 1 cut(s) 951
Eco81I CCTNAGG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 1342
EcoICRI GAGCTC 2 cut(s) 1347, 1433
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 687
EcoT38I GRGCYC 2 cut(s) 1349, 1435
ErhI CCWWGG 1 cut(s) 687
FaqI GGGAC 1 cut(s) 677
Fnu4HI GCNGC 3 cut(s) 124, 684, 1278
FokI GGATG 7 cut(s) 160, 606, 1112, 1211, 1456, 1529, 1577
FriOI GRGCYC 2 cut(s) 1349, 1435
Fsp4HI GCNGC 3 cut(s) 124, 684, 1278
FspBI CTAG 4 cut(s) 447, 624, 998, 1377
GluI GCNGC 3 cut(s) 124, 684, 1278
HaeIII GGCC 3 cut(s) 495, 780, 928
HapII CCGG 2 cut(s) 1169, 1461
HgaI GACGC 1 cut(s) 796
HincII GTYRAC 1 cut(s) 1285
HindII GTYRAC 1 cut(s) 1285
HindIII AAGCTT 2 cut(s) 1005, 1149
HinfI GANTC 7 cut(s) 4, 80, 734, 1142, 1325, 1405, 1586
HpaII CCGG 2 cut(s) 1169, 1461
HphI GGTGA 2 cut(s) 1362, 1475
Hpy166II GTNNAC 3 cut(s) 1033, 1285, 1370
Hpy188I TCNGA 6 cut(s) 514, 532, 901, 1043, 1477, 1491
Hpy188III TCNNGA 8 cut(s) 137, 447, 569, 715, 998, 1409, 1441, 1546
Hpy8I GTNNAC 3 cut(s) 1033, 1285, 1370
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 8 cut(s) 207, 249, 255, 831, 1383, 1409, 1460, 1478
HpyCH4III ACNGT 6 cut(s) 427, 721, 835, 871, 1030, 1161
HpyCH4IV ACGT 3 cut(s) 474, 886, 1065
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 777, 1574
HpyF3I CTNAG 7 cut(s) 501, 511, 531, 536, 782, 852, 1258
HpySE526I ACGT 3 cut(s) 474, 886, 1065
Kzo9I GATC 3 cut(s) 1165, 1519, 1537
LguI GCTCTTC 1 cut(s) 1423
LmnI GCTCC 4 cut(s) 412, 706, 1438, 1612
Lsp1109I GCAGC 3 cut(s) 135, 670, 1289
LweI GCATC 4 cut(s) 1344, 1434, 1494, 1555
MaeI CTAG 4 cut(s) 447, 624, 998, 1377
MaeII ACGT 3 cut(s) 474, 886, 1065
MaeIII GTNAC 6 cut(s) 155, 184, 308, 721, 761, 991
MalI GATC 3 cut(s) 1167, 1521, 1539
MboI GATC 3 cut(s) 1165, 1519, 1537
MhlI GDGCHC 4 cut(s) 324, 341, 1349, 1435
MlyI GAGTC 3 cut(s) 13, 1414, 1595
MmeI TCCRAC 1 cut(s) 1205
MseI TTAA 7 cut(s) 279, 417, 590, 635, 810, 960, 1113
MslI CAYNNNNRTG 1 cut(s) 1068
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 2 cut(s) 1169, 1461
Mva1269I GAATGC 2 cut(s) 1498, 1579
MwoI GCNNNNNNNGC 3 cut(s) 365, 777, 1574
NcoI CCATGG 1 cut(s) 687
NdeII GATC 3 cut(s) 1165, 1519, 1537
NlaIV GGNNCC 2 cut(s) 693, 702
NmeAIII GCCGAG 1 cut(s) 1537
NmuCI GTSAC 4 cut(s) 155, 184, 308, 761
NspI RCATGY 4 cut(s) 711, 895, 956, 1073
PaeI GCATGC 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 1342
PagI TCATGA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 780
PciI ACATGT 2 cut(s) 707, 1069
PciSI GCTCTTC 1 cut(s) 1423
PctI GAATGC 2 cut(s) 1498, 1579
PfeI GAWTC 4 cut(s) 80, 734, 1142, 1325
PinAI ACCGGT 1 cut(s) 1460
PkrI GCNGC 3 cut(s) 125, 685, 1279
PleI GAGTC 3 cut(s) 12, 1413, 1594
PpsI GAGTC 3 cut(s) 12, 1413, 1594
Ppu21I YACGTR 1 cut(s) 1066
PscI ACATGT 2 cut(s) 707, 1069
PshBI ATTAAT 1 cut(s) 635
Psp124BI GAGCTC 2 cut(s) 1349, 1435
Psp1406I AACGTT 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 693, 702
PspPI GGNCC 1 cut(s) 691
PspXI VCTCGAGB 1 cut(s) 1342
RsaI GTAC 5 cut(s) 885, 1068, 1074, 1306, 1386
RsaNI GTAC 5 cut(s) 884, 1067, 1073, 1305, 1385
RseI CAYNNNNRTG 1 cut(s) 1068
SacI GAGCTC 2 cut(s) 1349, 1435
SapI GCTCTTC 1 cut(s) 1423
SaqAI TTAA 7 cut(s) 279, 417, 590, 635, 810, 960, 1113
SatI GCNGC 3 cut(s) 124, 684, 1278
Sau3AI GATC 3 cut(s) 1165, 1519, 1537
Sau96I GGNCC 1 cut(s) 691
SchI GAGTC 3 cut(s) 13, 1414, 1595
SduI GDGCHC 4 cut(s) 324, 341, 1349, 1435
SfaNI GCATC 4 cut(s) 1344, 1434, 1494, 1555
SfcI CTRYAG 1 cut(s) 1400
Sfr274I CTCGAG 1 cut(s) 1342
SinI GGWCC 1 cut(s) 691
SlaI CTCGAG 1 cut(s) 1342
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 5 cut(s) 766, 1112, 1342, 1348, 1354
SmoI CTYRAG 5 cut(s) 766, 1112, 1342, 1348, 1354
SphI GCATGC 1 cut(s) 895
SseBI AGGCCT 1 cut(s) 780
SspMI CTAG 4 cut(s) 447, 624, 998, 1377
SstI GAGCTC 2 cut(s) 1349, 1435
StuI AGGCCT 1 cut(s) 780
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 6 cut(s) 427, 721, 835, 871, 1030, 1161
TaiI ACGT 3 cut(s) 477, 889, 1068
TaqI TCGA 6 cut(s) 75, 294, 610, 964, 1343, 1589
TfiI GAWTC 4 cut(s) 80, 734, 1142, 1325
Tru1I TTAA 7 cut(s) 279, 417, 590, 635, 810, 960, 1113
Tru9I TTAA 7 cut(s) 279, 417, 590, 635, 810, 960, 1113
TscAI CASTG 4 cut(s) 105, 755, 876, 942
TseFI GTSAC 4 cut(s) 155, 184, 308, 761
TseI GCWGC 3 cut(s) 123, 683, 1277
Tsp45I GTSAC 4 cut(s) 155, 184, 308, 761
TspGWI ACGGA 1 cut(s) 858
TspRI CASTG 4 cut(s) 105, 755, 876, 942
Vha464I CTTAAG 1 cut(s) 1112
VpaK11BI GGWCC 1 cut(s) 691
VspI ATTAAT 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 500
XapI RAATTY 3 cut(s) 27, 50, 1044
XbaI TCTAGA 2 cut(s) 446, 997
XceI RCATGY 4 cut(s) 711, 895, 956, 1073
XhoI CTCGAG 1 cut(s) 1342
XspI CTAG 4 cut(s) 447, 624, 998, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.