FvH4_4g14844

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000106
Physical Location & Seq
Reverse (-)
18488137 .. 18490390
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14844.t1

Sequence Viewer

Length: 1383 bp
ATGAAAGATTATTCCACCAGAACTATTATCTTTTCATGGTACCAGAGCAGTGATAAGATCCTGTTCTATCGTTGCACTCTAATTTCTCGTGCAGCCTCCCTATCTCAGCCAATCCCATCATCTCCAAAACCTGACTGTTCTATTCCTAAGACCTCAGAATCCTCAAAATCCTCACCACCAAAAATTGATTCTGTTCCAAAGGATTCAGAAACCTTATTAGAGGTTTCAAGTCCCTATCTCATTCACCATTCCGATCATCCTCGATTGGTTCTCATCTCCAAACCCTTGAATGGAGACAATTTCTCTGGTTGGAAAAGGGCTATGGTTCGAGCCTTAAATTCCAAGAAAAAGCTCGGATTCGTCAATGGCTCTATTAAAGCTCCTTCAGAAACAGCTGACCCTAATGGTTATGCGATTTGGTCAAGGTGTAATGACATGGTCCACTCTTGGATCGTTAATTCTTGCGATCCAGAAATAGCCGAAAGTGTGACCTATTATCCTACTGCCTATGAAGTTTGGGAGGATCTTCATGAACGCTTTTCTCAAGCAAATGCGACACGCATCTTTGAGATTCAGAGAGATATCAACTCTCTTCGACAAGAACAACTCTCAGTTTCAGTCTATTACACAAAGTTGAAGGCTTTATGGGATGAATTATCAACACTTGATGCAACACAACAAACAGATCAACAGAAATTGATGCAATTCCTTATGGGATTGAATGAAACATACCAGGCTATCCGAGGACAAATTCTTCTCATGAAGCCTCTGCCCACTGTTCGACAAGCCTTCTCCTCTGTCCTTCAAGAAGAAAAGCAACGTCTGATTGCTTCATCCCACATGGTGGAAGACTCCGGCAGCGCTGCCATGGCAGTCCAATCCGAGAATAACAGGTCGGCACCGGAAGCAAGGAATGATCAAGCTAATCGGTTTTCTGGAAATAACAATCGGTTTTCTGGAGGAGACCGCTCTAATCGCAGCACCTGGAATGATCGAACAGAGCGTGGTGGAGGAACTCATCGCGGCTCCTGGAATGGAGGACGACGGGGTGATCAAAACCACCGTCGTTTTGGGTCAGAAAGACGAAGGCCTCAATGTACCTATTGTGGTGATATGGGCCACTGGGTTCAGACTTGTCACAAATTACATGGATACCCAGAAGGCCACCCTAAAGCAAGAGATAATCCAGGTAATTTTAACAGAACAGCTGCTGCTAATTATGCTTCAGAGGAGAGGTTGGTTTCGATTCCAGAAGACCAACTAAAACAATTGCTGTCACTTATCCCCAAAACTCAAGATGAGGACTCCAATAACAAAACCAGGATCTGGCTACAAGGAAGACGATTGGTTTGGGTAAGCTACGTGACAGACTATATTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3

Protein Analysis

461

Amino Acids

52.32

Weight (kDa)

8.99

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 82 - 128 5.1e-20 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 112 - 274 8.7e-13 gag-polypeptide of LTR copia-type
Retrotrans_gag PF03732 170 - 242 2.8e-07 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 39
AccB1I GGYRCC 2 cut(s) 39, 898
AccB7I CCANNNNNTGG 2 cut(s) 844, 1326
AccBSI CCGCTC 1 cut(s) 969
AccII CGCG 1 cut(s) 1023
AciI CCGC 2 cut(s) 967, 1023
AclWI GGATC 5 cut(s) 52, 458, 461, 531, 1331
AcsI RAATTY 2 cut(s) 337, 750
AcuI CTGAAG 2 cut(s) 369, 1209
AdeI CACNNNGTG 1 cut(s) 844
AfaI GTAC 2 cut(s) 41, 1099
AfeI AGCGCT 1 cut(s) 862
AfiI CCNNNNNNNGG 3 cut(s) 290, 844, 1326
AgsI TTSAA 5 cut(s) 228, 289, 637, 721, 806
AjnI CCWGG 5 cut(s) 732, 983, 1028, 1186, 1319
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 6 cut(s) 352, 380, 395, 923, 1208, 1359
AluI AGCT 6 cut(s) 352, 380, 395, 923, 1208, 1359
Alw26I GTCTC 2 cut(s) 288, 957
AlwI GGATC 5 cut(s) 52, 458, 461, 531, 1331
AlwNI CAGNNNCTG 3 cut(s) 984, 1211, 1326
Aor51HI AGCGCT 1 cut(s) 862
AoxI GGCC 3 cut(s) 1088, 1117, 1162
ApeKI GCWGC 6 cut(s) 92, 858, 863, 978, 1208, 1211
ApoI RAATTY 2 cut(s) 337, 750
ArsI GACNNNNNNTTYG 4 cut(s) 1048, 1080, 1332, 1364
Asp718I GGTACC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 863
AspS9I GGNCC 2 cut(s) 439, 1117
AsuHPI GGTGA 4 cut(s) 165, 236, 1061, 1121
AvaII GGWCC 1 cut(s) 439
BanI GGYRCC 2 cut(s) 39, 898
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 3 cut(s) 855, 1260, 1345
BbvI GCAGC 6 cut(s) 104, 850, 870, 990, 1195, 1198
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 5 cut(s) 734, 985, 1030, 1188, 1321
BciVI GTATCC 1 cut(s) 1145
BclI TGATCA 2 cut(s) 916, 1051
BcoDI GTCTC 2 cut(s) 288, 957
BfaI CTAG 1 cut(s) 1381
BfoI RGCGCY 1 cut(s) 864
BfuI GTATCC 1 cut(s) 1145
BisI GCNGC 7 cut(s) 93, 859, 864, 979, 1024, 1209, 1212
BlsI GCNGC 7 cut(s) 94, 860, 865, 980, 1025, 1210, 1213
Bme1390I CCNGG 5 cut(s) 734, 985, 1030, 1188, 1321
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 439, 1117
BmiI GGNNCC 3 cut(s) 41, 900, 1027
BmrFI CCNGG 5 cut(s) 734, 985, 1030, 1188, 1321
BmrI ACTGGG 1 cut(s) 1132
BmsI GCATC 3 cut(s) 570, 658, 690
BmuI ACTGGG 1 cut(s) 1132
BpiI GAAGAC 3 cut(s) 855, 1260, 1345
BpmI CTGGAG 1 cut(s) 978
BpuEI CTTGAG 2 cut(s) 528, 1278
BsaAI YACGTR 1 cut(s) 1363
BsaI GGTCTC 1 cut(s) 957
BsaJI CCNNGG 2 cut(s) 742, 867
BsaWI WCCGGW 1 cut(s) 901
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 844, 1326
Bse1I ACTGG 1 cut(s) 1127
BseBI CCWGG 5 cut(s) 734, 985, 1030, 1188, 1321
BseDI CCNNGG 2 cut(s) 742, 867
BseGI GGATG 3 cut(s) 256, 655, 833
BseLI CCNNNNNNNGG 3 cut(s) 290, 844, 1326
BseMII CTCAG 3 cut(s) 119, 168, 624
BseNI ACTGG 1 cut(s) 1127
BseRI GAGGAG 3 cut(s) 784, 975, 1244
BseXI GCAGC 6 cut(s) 104, 850, 870, 990, 1195, 1198
BsgI GTGCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 1023
BshFI GGCC 3 cut(s) 1090, 1119, 1164
BshNI GGYRCC 2 cut(s) 39, 898
BsiSI CCGG 2 cut(s) 855, 902
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 3 cut(s) 290, 844, 1326
BsmAI GTCTC 2 cut(s) 288, 957
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 3 cut(s) 1090, 1119, 1164
Bso31I GGTCTC 1 cut(s) 957
Bsp19I CCATGG 1 cut(s) 867
BspACI CCGC 2 cut(s) 967, 1023
BspANI GGCC 3 cut(s) 1090, 1119, 1164
BspCNI CTCAG 3 cut(s) 118, 167, 623
BspFNI CGCG 1 cut(s) 1023
BspHI TCATGA 2 cut(s) 529, 759
BspLI GGNNCC 3 cut(s) 41, 900, 1027
BspPI GGATC 5 cut(s) 52, 458, 461, 531, 1331
BspT107I GGYRCC 2 cut(s) 39, 898
BspTNI GGTCTC 1 cut(s) 957
BsrBI CCGCTC 1 cut(s) 969
BsrI ACTGG 1 cut(s) 1127
BssECI CCNNGG 2 cut(s) 742, 867
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 867
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 5 cut(s) 734, 985, 1030, 1188, 1321
Bst4CI ACNGT 3 cut(s) 137, 778, 1064
Bst6I CTCTTC 1 cut(s) 597
BstBAI YACGTR 1 cut(s) 1363
BstDEI CTNAG 4 cut(s) 105, 147, 154, 610
BstDSI CCRYGG 1 cut(s) 867
BstF5I GGATG 3 cut(s) 256, 655, 833
BstFNI CGCG 1 cut(s) 1023
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 1 cut(s) 863
BstMAI GTCTC 2 cut(s) 288, 957
BstMWI GCNNNNNNNGC 4 cut(s) 869, 905, 975, 1220
BstNI CCWGG 5 cut(s) 734, 985, 1030, 1188, 1321
BstSCI CCNGG 5 cut(s) 732, 983, 1028, 1186, 1319
BstUI CGCG 1 cut(s) 1023
BstV1I GCAGC 6 cut(s) 104, 850, 870, 990, 1195, 1198
BstV2I GAAGAC 3 cut(s) 855, 1260, 1345
BstX2I RGATCY 3 cut(s) 57, 523, 1323
BstYI RGATCY 3 cut(s) 57, 523, 1323
BsuI GTATCC 1 cut(s) 1145
BsuRI GGCC 3 cut(s) 1090, 1119, 1164
BtgI CCRYGG 1 cut(s) 867
BtgZI GCGATG 1 cut(s) 1004
BtsCI GGATG 3 cut(s) 256, 655, 833
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 3 cut(s) 55, 774, 1120
CaiI CAGNNNCTG 3 cut(s) 984, 1211, 1326
CciI TCATGA 2 cut(s) 529, 759
CfoI GCGC 1 cut(s) 863
Cfr13I GGNCC 2 cut(s) 439, 1117
Csp6I GTAC 2 cut(s) 40, 1098
CviAII CATG 7 cut(s) 36, 436, 530, 760, 841, 868, 1148
CviQI GTAC 2 cut(s) 40, 1098
DdeI CTNAG 4 cut(s) 105, 147, 154, 610
DraIII CACNNNGTG 1 cut(s) 844
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 867
Eco147I AGGCCT 1 cut(s) 1090
Eco31I GGTCTC 1 cut(s) 957
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 439
Eco47III AGCGCT 1 cut(s) 862
Eco57I CTGAAG 2 cut(s) 369, 1209
EcoRII CCWGG 5 cut(s) 732, 983, 1028, 1186, 1319
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 867
ErhI CCWWGG 1 cut(s) 867
FaeI CATG 7 cut(s) 39, 439, 533, 763, 844, 871, 1151
FaqI GGGAC 1 cut(s) 216
FatI CATG 7 cut(s) 35, 435, 529, 759, 840, 867, 1147
FbaI TGATCA 2 cut(s) 916, 1051
Fnu4HI GCNGC 7 cut(s) 93, 859, 864, 979, 1024, 1209, 1212
FokI GGATG 3 cut(s) 243, 662, 820
Fsp4HI GCNGC 7 cut(s) 93, 859, 864, 979, 1024, 1209, 1212
FspBI CTAG 1 cut(s) 1381
GlaI GCGC 1 cut(s) 862
GluI GCNGC 7 cut(s) 93, 859, 864, 979, 1024, 1209, 1212
GsuI CTGGAG 1 cut(s) 978
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 3 cut(s) 1090, 1119, 1164
HapII CCGG 2 cut(s) 855, 902
HhaI GCGC 1 cut(s) 863
Hin1II CATG 7 cut(s) 39, 439, 533, 763, 844, 871, 1151
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HinfI GANTC 8 cut(s) 158, 188, 203, 357, 571, 851, 1246, 1304
HpaII CCGG 2 cut(s) 855, 902
HphI GGTGA 4 cut(s) 165, 236, 1061, 1121
Hpy166II GTNNAC 1 cut(s) 442
Hpy188III TCNNGA 8 cut(s) 470, 530, 760, 806, 936, 957, 1250, 1295
Hpy8I GTNNAC 1 cut(s) 442
Hpy99I CGWCG 2 cut(s) 1047, 1068
HpyAV CCTTC 6 cut(s) 393, 631, 799, 812, 1080, 1154
HpyCH4III ACNGT 3 cut(s) 137, 778, 1064
HpyCH4IV ACGT 2 cut(s) 820, 1362
HpyCH4V TGCA 4 cut(s) 75, 92, 671, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 869, 905, 975, 1220
HpyF3I CTNAG 4 cut(s) 105, 147, 154, 610
HpySE526I ACGT 2 cut(s) 820, 1362
Hsp92II CATG 7 cut(s) 39, 439, 533, 763, 844, 871, 1151
HspAI GCGC 1 cut(s) 861
KpnI GGTACC 1 cut(s) 43
Ksp22I TGATCA 2 cut(s) 916, 1051
LmnI GCTCC 2 cut(s) 385, 1031
Lsp1109I GCAGC 6 cut(s) 104, 850, 870, 990, 1195, 1198
LweI GCATC 3 cut(s) 570, 658, 690
MaeI CTAG 1 cut(s) 1381
MaeII ACGT 2 cut(s) 820, 1362
MaeIII GTNAC 4 cut(s) 487, 1136, 1275, 1363
MbiI CCGCTC 1 cut(s) 969
MboII GAAGA 7 cut(s) 518, 584, 746, 821, 860, 1265, 1350
MfeI CAATTG 1 cut(s) 1268
MflI RGATCY 3 cut(s) 57, 523, 1323
MlyI GAGTC 2 cut(s) 845, 1298
MmeI TCCRAC 1 cut(s) 290
MseI TTAA 4 cut(s) 335, 375, 456, 1197
MspA1I CMGCKG 2 cut(s) 395, 1208
MspI CCGG 2 cut(s) 855, 902
MspR9I CCNGG 5 cut(s) 734, 985, 1030, 1188, 1321
MunI CAATTG 1 cut(s) 1268
MvaI CCWGG 5 cut(s) 734, 985, 1030, 1188, 1321
MvnI CGCG 1 cut(s) 1023
MwoI GCNNNNNNNGC 4 cut(s) 869, 905, 975, 1220
NcoI CCATGG 1 cut(s) 867
NlaIII CATG 7 cut(s) 39, 439, 533, 763, 844, 871, 1151
NlaIV GGNNCC 3 cut(s) 41, 900, 1027
NmuCI GTSAC 4 cut(s) 487, 1136, 1275, 1363
PagI TCATGA 2 cut(s) 529, 759
PceI AGGCCT 1 cut(s) 1090
PcsI WCGNNNNNNNCGW 1 cut(s) 1000
PfeI GAWTC 6 cut(s) 158, 188, 203, 357, 571, 1246
PflFI GACNNNGTC 1 cut(s) 437
PflMI CCANNNNNTGG 2 cut(s) 844, 1326
PfoI TCCNGGA 1 cut(s) 1028
PkrI GCNGC 7 cut(s) 94, 860, 865, 980, 1025, 1210, 1213
PleI GAGTC 2 cut(s) 845, 1298
PpsI GAGTC 2 cut(s) 845, 1298
Ppu21I YACGTR 1 cut(s) 1363
Psp6I CCWGG 5 cut(s) 732, 983, 1028, 1186, 1319
PspGI CCWGG 5 cut(s) 732, 983, 1028, 1186, 1319
PspN4I GGNNCC 3 cut(s) 41, 900, 1027
PspPI GGNCC 2 cut(s) 439, 1117
PstNI CAGNNNCTG 3 cut(s) 984, 1211, 1326
PsuI RGATCY 3 cut(s) 57, 523, 1323
PsyI GACNNNGTC 1 cut(s) 437
PvuII CAGCTG 2 cut(s) 395, 1208
RsaI GTAC 2 cut(s) 41, 1099
RsaNI GTAC 2 cut(s) 40, 1098
SaqAI TTAA 4 cut(s) 335, 375, 456, 1197
SatI GCNGC 7 cut(s) 93, 859, 864, 979, 1024, 1209, 1212
Sau96I GGNCC 2 cut(s) 439, 1117
SchI GAGTC 2 cut(s) 845, 1298
ScrFI CCNGG 5 cut(s) 734, 985, 1030, 1188, 1321
SfaNI GCATC 3 cut(s) 570, 658, 690
SinI GGWCC 1 cut(s) 439
SmlI CTYRAG 2 cut(s) 543, 1293
SmoI CTYRAG 2 cut(s) 543, 1293
SseBI AGGCCT 1 cut(s) 1090
SsiI CCGC 2 cut(s) 967, 1023
SspMI CTAG 1 cut(s) 1381
StuI AGGCCT 1 cut(s) 1090
StyD4I CCNGG 5 cut(s) 732, 983, 1028, 1186, 1319
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 3 cut(s) 137, 778, 1064
TaiI ACGT 2 cut(s) 823, 1365
TaqI TCGA 6 cut(s) 262, 328, 595, 781, 994, 1244
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 6 cut(s) 158, 188, 203, 357, 571, 1246
Tru1I TTAA 4 cut(s) 335, 375, 456, 1197
Tru9I TTAA 4 cut(s) 335, 375, 456, 1197
TscAI CASTG 3 cut(s) 55, 781, 1127
TseFI GTSAC 4 cut(s) 487, 1136, 1275, 1363
TseI GCWGC 6 cut(s) 92, 858, 863, 978, 1208, 1211
Tsp45I GTSAC 4 cut(s) 487, 1136, 1275, 1363
TspDTI ATGAA 9 cut(s) 17, 24, 518, 525, 546, 666, 738, 776, 822
TspRI CASTG 3 cut(s) 55, 781, 1127
Tth111I GACNNNGTC 1 cut(s) 437
Van91I CCANNNNNTGG 2 cut(s) 844, 1326
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 2 cut(s) 337, 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 1067
XspI CTAG 1 cut(s) 1381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.