Rw4G004820

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000106
Physical Location & Seq
Reverse (-)
9422902 .. 9424383
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004820.1

Sequence Viewer

Length: 1386 bp
ATGGCCGGTGACGAAGATCGTTCGATCATCAAACAAGACAAGGGTTTGAACACTTCCAAGACCGCAGAACCATGGGAGAATTCCAATCACCCGCTCTTTCTCCATCATTCGGATCAACCAGGGGCAGTTCTTGTCCCCCAACCGTTGATGGAAGATAACTACACAACGTGGGCACAATCAATGAACATGGCGCTCACTATCAAGAACAAGAAGGGTTTCATTGATGGAACCCTGAAACGACCGGTGCACAACACCGATGAACAAAACCAATGGGATCGATGTAACACTCTTGTCAAAACTTGGCTTATGGCAGCCATGTCAAAGGAGAATCAAGGTAGCGTTGTTCACTGCAAGGATGCTCGAGTTTTGTTGTTCAATATAGAGAATGCTTTACATGGGTGTGAACAAGGATCAAGCTCAGTCAATTCCTTTTACACGAAACTCAAAGGTCTTTGGGATGAAAAAGACGCTCTTTGTTCCTTTCCTCATTGTACCTGTGAGGCTGCAACAGAGGTCCAGACTTTCATTGAAACTCAAAAGACCATGAAATTCCTTATGGGACTAAATGAGAGTTTTGCACAAACCCGCAGCACCATAATAGGAATGGATCCTCTTCCCAATCTCAACAAAGCTTATGCAATGGTGTTACGCCAAGAGAAGCAAGCGGAAACTGCCGCTAACAAATCCACACTTCCATCAGAATCTTCTGCCTTTGCGGTCAAGGGAGTGAACAGAGCCTACAATCTTAAAGAAGGAGAGAACCGCAACTTCAATCCTAGTGCGGGAACATCAAGATTTTGTGAGAAGTGTGGGATGAATAATCACATTGCGCGGTATTGCAGGGCATACTTGAAGTGCACATACTGTGAGGGCAAAGGGCACACCTACGCATATTGTCGCAGAAGGAAGAATGATAATGCTGCTGCTGAAGGTGGACAAATTCGATCCAAGGCAAATCATGTTGAGGCACAAAATGATAACAAGGAAGCTGCTTCTGTCAATTTTCCATTCACAAAAGAGGAGTGTCAACATCTCCTCAACCAACTCATAACTCAAACAAAGCCTGCATTTGCCAATTTGGTCGGTAACATCTCAAACTATGAGGAGCTTTCAGATAGTGGGGCTAGTGATCATATTGTTTGCAGTCCTAGTTTGCTTACCTCATTTAAATCAGTACCTAATCGAAAAGTTAAACTTCCTGATGGAACCACAACGCATGTCACTCATATTGGCACCGTTGTTTTCTCTCCCCATTTTGTTCTTCATAACGTTCTTTGTGTTCCGCTATTTTATCTTAATCTGATTTTAGTGAGCAAGCTAGCATTCGACTCTTTCTATATTACCATTTTTCTCAGACATCTCTGTTTCATACAGGACCTACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

461

Amino Acids

51.69

Weight (kDa)

8.24

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 35 - 81 6.4e-18 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 371 - 440 3.7e-11 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1232
AccBSI CCGCTC 1 cut(s) 94
AccII CGCG 1 cut(s) 832
AclI AACGTT 1 cut(s) 1269
AclWI GGATC 6 cut(s) 120, 282, 418, 602, 615, 939
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 79, 548, 939
AcuI CTGAAG 1 cut(s) 948
AdeI CACNNNGTG 1 cut(s) 168
AfaI GTAC 2 cut(s) 493, 1176
AfiI CCNNNNNNNGG 2 cut(s) 109, 782
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 5 cut(s) 49, 376, 530, 772, 853
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 5 cut(s) 417, 632, 989, 1108, 1318
AluI AGCT 5 cut(s) 417, 632, 989, 1108, 1318
Alw21I GWGCWC 2 cut(s) 249, 860
Alw44I GTGCAC 2 cut(s) 245, 856
AlwI GGATC 6 cut(s) 120, 282, 418, 602, 615, 939
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 2 cut(s) 245, 856
ApeKI GCWGC 6 cut(s) 311, 503, 588, 920, 923, 989
ApoI RAATTY 3 cut(s) 79, 548, 939
AsiGI ACCGGT 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 2 cut(s) 193, 832
AspS9I GGNCC 2 cut(s) 514, 1375
AsuHPI GGTGA 2 cut(s) 20, 80
AsuNHI GCTAGC 1 cut(s) 1318
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 2 cut(s) 514, 1375
BaeGI GKGCMC 4 cut(s) 175, 249, 860, 882
BamHI GGATCC 1 cut(s) 607
BanI GGYRCC 1 cut(s) 1232
BarI GAAGNNNNNNTAC 2 cut(s) 845, 877
Bbv12I GWGCWC 2 cut(s) 249, 860
BbvI GCAGC 6 cut(s) 323, 490, 600, 907, 910, 976
BccI CCATC 5 cut(s) 111, 142, 218, 703, 1196
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 1129
BfaI CTAG 4 cut(s) 777, 1125, 1149, 1319
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 7 cut(s) 312, 504, 589, 675, 921, 924, 990
BlsI GCNGC 7 cut(s) 313, 505, 590, 676, 922, 925, 991
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 514, 1375
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 514, 1375
BmiI GGNNCC 4 cut(s) 229, 609, 1207, 1234
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 346
BmtI GCTAGC 1 cut(s) 1322
Bsa29I ATCGAT 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 71, 119, 948
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 782
Bse118I RCCGGY 2 cut(s) 5, 241
Bse3DI GCAATG 2 cut(s) 645, 825
BseBI CCWGG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 277
BseDI CCNNGG 3 cut(s) 71, 119, 948
BseGI GGATG 3 cut(s) 361, 463, 819
BseLI CCNNNNNNNGG 2 cut(s) 109, 782
BseMI GCAATG 2 cut(s) 645, 825
BseMII CTCAG 2 cut(s) 432, 1366
BseRI GAGGAG 3 cut(s) 1025, 1034, 1118
BseSI GKGCMC 4 cut(s) 175, 249, 860, 882
BseXI GCAGC 6 cut(s) 323, 490, 600, 907, 910, 976
Bsh1236I CGCG 1 cut(s) 832
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 1232
BshTI ACCGGT 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 249, 860
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 6, 242
BslFI GGGAC 2 cut(s) 119, 573
BslI CCNNNNNNNGG 2 cut(s) 109, 782
BsmFI GGGAC 2 cut(s) 119, 573
BsmI GAATGC 2 cut(s) 391, 1322
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 4 cut(s) 175, 249, 860, 882
Bsp143I GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
Bsp19I CCATGG 1 cut(s) 71
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 431, 1365
BspDI ATCGAT 1 cut(s) 277
BspFNI CGCG 1 cut(s) 832
BspLI GGNNCC 4 cut(s) 229, 609, 1207, 1234
BspOI GCTAGC 1 cut(s) 1322
BspPI GGATC 6 cut(s) 120, 282, 418, 602, 615, 939
BspT107I GGYRCC 1 cut(s) 1232
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 2 cut(s) 645, 825
BsrFI RCCGGY 2 cut(s) 5, 241
BssAI RCCGGY 2 cut(s) 5, 241
BssECI CCNNGG 3 cut(s) 71, 119, 948
BssMI GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
BssT1I CCWWGG 2 cut(s) 71, 948
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 144, 866, 1237
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 4 cut(s) 663, 1065, 1316, 1320
BstDEI CTNAG 2 cut(s) 418, 1352
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 3 cut(s) 361, 463, 819
BstFNI CGCG 1 cut(s) 832
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 2 cut(s) 193, 832
BstKTI GATC 8 cut(s) 19, 27, 115, 277, 413, 610, 947, 1132
BstMBI GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 1220
BstSCI CCNGG 1 cut(s) 118
BstSLI GKGCMC 4 cut(s) 175, 249, 860, 882
BstUI CGCG 1 cut(s) 832
BstV1I GCAGC 6 cut(s) 323, 490, 600, 907, 910, 976
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
Bsu15I ATCGAT 1 cut(s) 277
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 3 cut(s) 361, 463, 819
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 4 cut(s) 663, 1065, 1316, 1320
CfoI GCGC 2 cut(s) 193, 832
Cfr10I RCCGGY 2 cut(s) 5, 241
Cfr13I GGNCC 2 cut(s) 514, 1375
ClaI ATCGAT 1 cut(s) 277
CseI GACGC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 492, 1175
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 7 cut(s) 72, 187, 316, 395, 544, 959, 1217
CviQI GTAC 2 cut(s) 492, 1175
DdeI CTNAG 2 cut(s) 418, 1352
DpnI GATC 8 cut(s) 18, 26, 114, 276, 412, 609, 946, 1131
DpnII GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
DraI TTTAAA 1 cut(s) 1168
DraIII CACNNNGTG 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 2 cut(s) 71, 948
Eco47I GGWCC 2 cut(s) 514, 1375
Eco57I CTGAAG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 1375
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 71, 948
ErhI CCWWGG 2 cut(s) 71, 948
FaeI CATG 7 cut(s) 75, 190, 319, 398, 547, 962, 1220
FalI AAGNNNNNCTT 4 cut(s) 456, 488, 1179, 1211
FaqI GGGAC 2 cut(s) 119, 573
FatI CATG 7 cut(s) 71, 186, 315, 394, 543, 958, 1216
FauI CCCGC 3 cut(s) 99, 593, 775
FbaI TGATCA 1 cut(s) 1129
Fnu4HI GCNGC 7 cut(s) 312, 504, 589, 675, 921, 924, 990
FokI GGATG 3 cut(s) 368, 470, 826
Fsp4HI GCNGC 7 cut(s) 312, 504, 589, 675, 921, 924, 990
FspBI CTAG 4 cut(s) 777, 1125, 1149, 1319
GlaI GCGC 2 cut(s) 192, 831
GluI GCNGC 7 cut(s) 312, 504, 589, 675, 921, 924, 990
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 6, 242
HgaI GACGC 1 cut(s) 476
HhaI GCGC 2 cut(s) 193, 832
Hin1II CATG 7 cut(s) 75, 190, 319, 398, 547, 962, 1220
Hin6I GCGC 2 cut(s) 191, 830
HinP1I GCGC 2 cut(s) 191, 830
HincII GTYRAC 1 cut(s) 1028
HindII GTYRAC 1 cut(s) 1028
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 3 cut(s) 328, 701, 1328
HpaII CCGG 2 cut(s) 6, 242
HphI GGTGA 2 cut(s) 20, 80
Hpy166II GTNNAC 7 cut(s) 247, 346, 404, 730, 858, 935, 1028
Hpy188I TCNGA 5 cut(s) 112, 700, 1114, 1302, 1355
Hpy188III TCNNGA 4 cut(s) 202, 517, 792, 1199
Hpy8I GTNNAC 7 cut(s) 247, 346, 404, 730, 858, 935, 1028
HpyAV CCTTC 4 cut(s) 205, 746, 897, 923
HpyCH4III ACNGT 3 cut(s) 144, 866, 1237
HpyCH4IV ACGT 2 cut(s) 167, 1269
HpyCH4V TGCA 9 cut(s) 247, 351, 506, 578, 638, 840, 858, 1067, 1143
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 2 cut(s) 418, 1352
HpySE526I ACGT 2 cut(s) 167, 1269
Hsp92II CATG 7 cut(s) 75, 190, 319, 398, 547, 962, 1220
HspAI GCGC 2 cut(s) 191, 830
Ksp22I TGATCA 1 cut(s) 1129
Kzo9I GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
LmnI GCTCC 1 cut(s) 1105
Lsp1109I GCAGC 6 cut(s) 323, 490, 600, 907, 910, 976
LweI GCATC 1 cut(s) 346
MaeI CTAG 4 cut(s) 777, 1125, 1149, 1319
MaeII ACGT 2 cut(s) 167, 1269
MaeIII GTNAC 5 cut(s) 8, 281, 645, 1085, 1219
MalI GATC 8 cut(s) 18, 26, 114, 276, 412, 609, 946, 1131
MbiI CCGCTC 1 cut(s) 94
MboI GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
MboII GAAGA 6 cut(s) 26, 164, 605, 696, 919, 1253
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 4 cut(s) 175, 249, 860, 882
MluCI AATT 6 cut(s) 79, 424, 548, 939, 1000, 1075
MlyI GAGTC 1 cut(s) 1322
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 4 cut(s) 747, 1167, 1191, 1296
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 2 cut(s) 6, 242
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 2 cut(s) 391, 1322
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 832
MwoI GCNNNNNNNGC 1 cut(s) 671
NcoI CCATGG 1 cut(s) 71
NdeII GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
NheI GCTAGC 1 cut(s) 1318
NlaIII CATG 7 cut(s) 75, 190, 319, 398, 547, 962, 1220
NlaIV GGNNCC 4 cut(s) 229, 609, 1207, 1234
NmuCI GTSAC 2 cut(s) 8, 1219
NspI RCATGY 1 cut(s) 1220
PaeR7I CTCGAG 1 cut(s) 360
PctI GAATGC 2 cut(s) 391, 1322
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 328, 701
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 7 cut(s) 313, 505, 590, 676, 922, 925, 991
PleI GAGTC 1 cut(s) 1322
PpsI GAGTC 1 cut(s) 1322
PpuMI RGGWCCY 1 cut(s) 1375
Psp1406I AACGTT 1 cut(s) 1269
Psp5II RGGWCCY 1 cut(s) 1375
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 4 cut(s) 229, 609, 1207, 1234
PspPI GGNCC 2 cut(s) 514, 1375
PspPPI RGGWCCY 1 cut(s) 1375
PspXI VCTCGAGB 1 cut(s) 360
PsrI GAACNNNNNNTAC 2 cut(s) 722, 754
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 2 cut(s) 493, 1176
RsaNI GTAC 2 cut(s) 492, 1175
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 4 cut(s) 747, 1167, 1191, 1296
SatI GCNGC 7 cut(s) 312, 504, 589, 675, 921, 924, 990
Sau3AI GATC 8 cut(s) 16, 24, 112, 274, 410, 607, 944, 1129
Sau96I GGNCC 2 cut(s) 514, 1375
SchI GAGTC 1 cut(s) 1322
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 4 cut(s) 175, 249, 860, 882
SfaNI GCATC 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 360
SinI GGWCC 2 cut(s) 514, 1375
SlaI CTCGAG 1 cut(s) 360
SmiI ATTTAAAT 1 cut(s) 1168
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
Sse9I AATT 6 cut(s) 79, 424, 548, 939, 1000, 1075
SspMI CTAG 4 cut(s) 777, 1125, 1149, 1319
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 71, 948
SwaI ATTTAAAT 1 cut(s) 1168
TaaI ACNGT 3 cut(s) 144, 866, 1237
TaiI ACGT 2 cut(s) 170, 1272
TaqI TCGA 6 cut(s) 23, 277, 361, 943, 1183, 1326
TasI AATT 6 cut(s) 79, 424, 548, 939, 1000, 1075
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 2 cut(s) 328, 701
Tru1I TTAA 4 cut(s) 747, 1167, 1191, 1296
Tru9I TTAA 4 cut(s) 747, 1167, 1191, 1296
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 2 cut(s) 8, 1219
TseI GCWGC 6 cut(s) 311, 503, 588, 920, 923, 989
Tsp45I GTSAC 2 cut(s) 8, 1219
TspDTI ATGAA 9 cut(s) 197, 208, 273, 474, 514, 560, 830, 1253, 1357
TspRI CASTG 1 cut(s) 353
VneI GTGCAC 2 cut(s) 245, 856
VpaK11BI GGWCC 2 cut(s) 514, 1375
XapI RAATTY 3 cut(s) 79, 548, 939
XceI RCATGY 1 cut(s) 1220
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XhoI CTCGAG 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 4 cut(s) 777, 1125, 1149, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.