gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Alginate_lyase2 | PF08787 | 41 - 216 | 2e-26 | Alginate lyase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 416 |
| AccB1I | GGYRCC | 3 cut(s) | 5, 416, 547 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 75, 98 |
| AccI | GTMKAC | 3 cut(s) | 210, 498, 591 |
| AccII | CGCG | 1 cut(s) | 558 |
| AciI | CCGC | 2 cut(s) | 558, 585 |
| AclWI | GGATC | 4 cut(s) | 83, 443, 456, 647 |
| AcsI | RAATTY | 1 cut(s) | 264 |
| AcuI | CTGAAG | 1 cut(s) | 276 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AdeI | CACNNNGTG | 1 cut(s) | 167 |
| AfaI | GTAC | 3 cut(s) | 323, 327, 418 |
| AfeI | AGCGCT | 1 cut(s) | 173 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 75, 98, 235, 557 |
| AgsI | TTSAA | 2 cut(s) | 411, 514 |
| AjnI | CCWGG | 1 cut(s) | 444 |
| AluBI | AGCT | 3 cut(s) | 75, 180, 202 |
| AluI | AGCT | 3 cut(s) | 75, 180, 202 |
| Alw21I | GWGCWC | 1 cut(s) | 198 |
| Alw26I | GTCTC | 2 cut(s) | 139, 630 |
| Alw44I | GTGCAC | 1 cut(s) | 194 |
| AlwI | GGATC | 4 cut(s) | 83, 443, 456, 647 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 75 |
| Aor51HI | AGCGCT | 1 cut(s) | 173 |
| AoxI | GGCC | 1 cut(s) | 77 |
| ApaLI | GTGCAC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 1 cut(s) | 72 |
| ApoI | RAATTY | 1 cut(s) | 264 |
| Asp718I | GGTACC | 1 cut(s) | 416 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AspS9I | GGNCC | 1 cut(s) | 66 |
| AsuC2I | CCSGG | 2 cut(s) | 236, 552 |
| AsuII | TTCGAA | 2 cut(s) | 268, 309 |
| AvaII | GGWCC | 1 cut(s) | 66 |
| BaeGI | GKGCMC | 2 cut(s) | 10, 198 |
| BamHI | GGATCC | 1 cut(s) | 448 |
| BanI | GGYRCC | 3 cut(s) | 5, 416, 547 |
| Bbv12I | GWGCWC | 1 cut(s) | 198 |
| BbvI | GCAGC | 1 cut(s) | 84 |
| BccI | CCATC | 4 cut(s) | 182, 462, 521, 599 |
| BciT130I | CCWGG | 1 cut(s) | 446 |
| BciVI | GTATCC | 1 cut(s) | 272 |
| BcnI | CCSGG | 2 cut(s) | 236, 552 |
| BcoDI | GTCTC | 2 cut(s) | 139, 630 |
| BfaI | CTAG | 1 cut(s) | 107 |
| BfmI | CTRYAG | 3 cut(s) | 175, 430, 438 |
| BfoI | RGCGCY | 1 cut(s) | 175 |
| BfuI | GTATCC | 1 cut(s) | 272 |
| BisI | GCNGC | 2 cut(s) | 73, 586 |
| BlsI | GCNGC | 2 cut(s) | 74, 587 |
| Bme1390I | CCNGG | 3 cut(s) | 236, 446, 552 |
| Bme18I | GGWCC | 1 cut(s) | 66 |
| BmgT120I | GGNCC | 1 cut(s) | 66 |
| BmiI | GGNNCC | 5 cut(s) | 7, 418, 450, 473, 549 |
| BmrFI | CCNGG | 3 cut(s) | 236, 446, 552 |
| BoxI | GACNNNNGTC | 1 cut(s) | 440 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 232, 264 |
| Bpu14I | TTCGAA | 2 cut(s) | 268, 309 |
| BpuMI | CCSGG | 2 cut(s) | 236, 552 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaAI | YACGTR | 1 cut(s) | 325 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaI | GGTCTC | 1 cut(s) | 139 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 234 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 75, 98, 235, 557 |
| Bse3DI | GCAATG | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 446 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 97, 234 |
| BseGI | GGATG | 2 cut(s) | 125, 138 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 75, 98, 235, 557 |
| BseMI | GCAATG | 1 cut(s) | 21 |
| BseMII | CTCAG | 1 cut(s) | 611 |
| BseSI | GKGCMC | 2 cut(s) | 10, 198 |
| BseXI | GCAGC | 1 cut(s) | 84 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| Bsh1285I | CGRYCG | 1 cut(s) | 556 |
| BshFI | GGCC | 1 cut(s) | 79 |
| BshNI | GGYRCC | 3 cut(s) | 5, 416, 547 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiEI | CGRYCG | 1 cut(s) | 556 |
| BsiHKAI | GWGCWC | 1 cut(s) | 198 |
| BsiSI | CCGG | 2 cut(s) | 236, 552 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 75, 98, 235, 557 |
| BsmAI | GTCTC | 2 cut(s) | 139, 630 |
| BsnI | GGCC | 1 cut(s) | 79 |
| Bso31I | GGTCTC | 1 cut(s) | 139 |
| Bsp119I | TTCGAA | 2 cut(s) | 268, 309 |
| Bsp1286I | GDGCHC | 2 cut(s) | 10, 198 |
| Bsp143I | GATC | 3 cut(s) | 88, 448, 639 |
| BspACI | CCGC | 2 cut(s) | 558, 585 |
| BspANI | GGCC | 1 cut(s) | 79 |
| BspCNI | CTCAG | 1 cut(s) | 610 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspLI | GGNNCC | 5 cut(s) | 7, 418, 450, 473, 549 |
| BspMAI | CTGCAG | 1 cut(s) | 442 |
| BspPI | GGATC | 4 cut(s) | 83, 443, 456, 647 |
| BspT104I | TTCGAA | 2 cut(s) | 268, 309 |
| BspT107I | GGYRCC | 3 cut(s) | 5, 416, 547 |
| BspTNI | GGTCTC | 1 cut(s) | 139 |
| BsrDI | GCAATG | 1 cut(s) | 21 |
| BssECI | CCNNGG | 2 cut(s) | 97, 234 |
| BssMI | GATC | 3 cut(s) | 88, 448, 639 |
| BssNAI | GTATAC | 1 cut(s) | 211 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 1 cut(s) | 97 |
| Bst1107I | GTATAC | 1 cut(s) | 211 |
| Bst2UI | CCWGG | 1 cut(s) | 446 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstBAI | YACGTR | 1 cut(s) | 325 |
| BstBI | TTCGAA | 2 cut(s) | 268, 309 |
| BstC8I | GCNNGC | 3 cut(s) | 34, 77, 373 |
| BstDEI | CTNAG | 3 cut(s) | 164, 398, 597 |
| BstF5I | GGATG | 2 cut(s) | 125, 138 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstH2I | RGCGCY | 1 cut(s) | 175 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstKTI | GATC | 3 cut(s) | 91, 451, 642 |
| BstMAI | GTCTC | 2 cut(s) | 139, 630 |
| BstMBI | GATC | 3 cut(s) | 88, 448, 639 |
| BstMCI | CGRYCG | 1 cut(s) | 556 |
| BstNI | CCWGG | 1 cut(s) | 446 |
| BstNSI | RCATGY | 1 cut(s) | 36 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 440 |
| BstSCI | CCNGG | 3 cut(s) | 234, 444, 550 |
| BstSFI | CTRYAG | 3 cut(s) | 175, 430, 438 |
| BstSLI | GKGCMC | 2 cut(s) | 10, 198 |
| BstSNI | TACGTA | 1 cut(s) | 325 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstV1I | GCAGC | 1 cut(s) | 84 |
| BstX2I | RGATCY | 1 cut(s) | 448 |
| BstYI | RGATCY | 1 cut(s) | 448 |
| BstZ17I | GTATAC | 1 cut(s) | 211 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 272 |
| BsuRI | GGCC | 1 cut(s) | 79 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtsCI | GGATG | 2 cut(s) | 125, 138 |
| BtsIMutI | CAGTG | 1 cut(s) | 216 |
| Cac8I | GCNNGC | 3 cut(s) | 34, 77, 373 |
| CaiI | CAGNNNCTG | 1 cut(s) | 75 |
| CfoI | GCGC | 1 cut(s) | 174 |
| Cfr13I | GGNCC | 1 cut(s) | 66 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 577 |
| Csp6I | GTAC | 3 cut(s) | 322, 326, 417 |
| CviAII | CATG | 4 cut(s) | 33, 251, 330, 619 |
| CviQI | GTAC | 3 cut(s) | 322, 326, 417 |
| DdeI | CTNAG | 3 cut(s) | 164, 398, 597 |
| DpnI | GATC | 3 cut(s) | 90, 450, 641 |
| DpnII | GATC | 3 cut(s) | 88, 448, 639 |
| DraI | TTTAAA | 1 cut(s) | 580 |
| DraIII | CACNNNGTG | 1 cut(s) | 167 |
| Eco105I | TACGTA | 1 cut(s) | 325 |
| Eco130I | CCWWGG | 1 cut(s) | 97 |
| Eco31I | GGTCTC | 1 cut(s) | 139 |
| Eco47I | GGWCC | 1 cut(s) | 66 |
| Eco47III | AGCGCT | 1 cut(s) | 173 |
| Eco57I | CTGAAG | 1 cut(s) | 276 |
| EcoRII | CCWGG | 1 cut(s) | 444 |
| EcoT14I | CCWWGG | 1 cut(s) | 97 |
| ErhI | CCWWGG | 1 cut(s) | 97 |
| FaeI | CATG | 4 cut(s) | 36, 254, 333, 622 |
| FatI | CATG | 4 cut(s) | 32, 250, 329, 618 |
| FauNDI | CATATG | 1 cut(s) | 151 |
| FblI | GTMKAC | 3 cut(s) | 210, 498, 591 |
| Fnu4HI | GCNGC | 2 cut(s) | 73, 586 |
| FokI | GGATG | 2 cut(s) | 112, 125 |
| Fsp4HI | GCNGC | 2 cut(s) | 73, 586 |
| FspBI | CTAG | 1 cut(s) | 107 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GluI | GCNGC | 2 cut(s) | 73, 586 |
| HaeII | RGCGCY | 1 cut(s) | 175 |
| HaeIII | GGCC | 1 cut(s) | 79 |
| HapII | CCGG | 2 cut(s) | 236, 552 |
| HgaI | GACGC | 1 cut(s) | 577 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 4 cut(s) | 36, 254, 333, 622 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HinfI | GANTC | 2 cut(s) | 247, 623 |
| HpaII | CCGG | 2 cut(s) | 236, 552 |
| Hpy166II | GTNNAC | 5 cut(s) | 85, 196, 211, 499, 592 |
| Hpy188I | TCNGA | 1 cut(s) | 476 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 5 cut(s) | 85, 196, 211, 499, 592 |
| HpyAV | CCTTC | 2 cut(s) | 305, 508 |
| HpyCH4IV | ACGT | 1 cut(s) | 324 |
| HpyCH4V | TGCA | 4 cut(s) | 36, 196, 358, 440 |
| HpyF3I | CTNAG | 3 cut(s) | 164, 398, 597 |
| HpySE526I | ACGT | 1 cut(s) | 324 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 4 cut(s) | 36, 254, 333, 622 |
| HspAI | GCGC | 1 cut(s) | 172 |
| KpnI | GGTACC | 1 cut(s) | 420 |
| Kzo9I | GATC | 3 cut(s) | 88, 448, 639 |
| Lsp1109I | GCAGC | 1 cut(s) | 84 |
| MaeI | CTAG | 1 cut(s) | 107 |
| MaeII | ACGT | 1 cut(s) | 324 |
| MaeIII | GTNAC | 2 cut(s) | 346, 659 |
| MalI | GATC | 3 cut(s) | 90, 450, 641 |
| MboI | GATC | 3 cut(s) | 88, 448, 639 |
| MboII | GAAGA | 1 cut(s) | 282 |
| MflI | RGATCY | 1 cut(s) | 448 |
| MhlI | GDGCHC | 2 cut(s) | 10, 198 |
| MluCI | AATT | 4 cut(s) | 130, 264, 305, 539 |
| MlyI | GAGTC | 2 cut(s) | 241, 632 |
| MmeI | TCCRAC | 2 cut(s) | 116, 611 |
| MnlI | CCTC | 4 cut(s) | 387, 514, 538, 554 |
| MseI | TTAA | 2 cut(s) | 480, 579 |
| MslI | CAYNNNNRTG | 1 cut(s) | 392 |
| MspA1I | CMGCKG | 1 cut(s) | 75 |
| MspI | CCGG | 2 cut(s) | 236, 552 |
| MspR9I | CCNGG | 3 cut(s) | 236, 446, 552 |
| MvaI | CCWGG | 1 cut(s) | 446 |
| MvnI | CGCG | 1 cut(s) | 558 |
| NciI | CCSGG | 2 cut(s) | 236, 552 |
| NdeI | CATATG | 1 cut(s) | 151 |
| NdeII | GATC | 3 cut(s) | 88, 448, 639 |
| NlaIII | CATG | 4 cut(s) | 36, 254, 333, 622 |
| NlaIV | GGNNCC | 5 cut(s) | 7, 418, 450, 473, 549 |
| NmuCI | GTSAC | 2 cut(s) | 346, 659 |
| NspI | RCATGY | 1 cut(s) | 36 |
| NspV | TTCGAA | 2 cut(s) | 268, 309 |
| PaeI | GCATGC | 1 cut(s) | 36 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 75, 98 |
| PfoI | TCCNGGA | 1 cut(s) | 444 |
| PkrI | GCNGC | 2 cut(s) | 74, 587 |
| PleI | GAGTC | 2 cut(s) | 241, 631 |
| PpsI | GAGTC | 2 cut(s) | 241, 631 |
| Ppu21I | YACGTR | 1 cut(s) | 325 |
| PshAI | GACNNNNGTC | 1 cut(s) | 440 |
| Psp6I | CCWGG | 1 cut(s) | 444 |
| PspGI | CCWGG | 1 cut(s) | 444 |
| PspN4I | GGNNCC | 5 cut(s) | 7, 418, 450, 473, 549 |
| PspPI | GGNCC | 1 cut(s) | 66 |
| PstI | CTGCAG | 1 cut(s) | 442 |
| PstNI | CAGNNNCTG | 1 cut(s) | 75 |
| PsuI | RGATCY | 1 cut(s) | 448 |
| PvuII | CAGCTG | 1 cut(s) | 75 |
| RsaI | GTAC | 3 cut(s) | 323, 327, 418 |
| RsaNI | GTAC | 3 cut(s) | 322, 326, 417 |
| RseI | CAYNNNNRTG | 1 cut(s) | 392 |
| SaqAI | TTAA | 2 cut(s) | 480, 579 |
| SatI | GCNGC | 2 cut(s) | 73, 586 |
| Sau3AI | GATC | 3 cut(s) | 88, 448, 639 |
| Sau96I | GGNCC | 1 cut(s) | 66 |
| SchI | GAGTC | 2 cut(s) | 241, 632 |
| ScrFI | CCNGG | 3 cut(s) | 236, 446, 552 |
| SduI | GDGCHC | 2 cut(s) | 10, 198 |
| SetI | ASST | 7 cut(s) | 77, 182, 204, 298, 327, 519, 648 |
| SfcI | CTRYAG | 3 cut(s) | 175, 430, 438 |
| SfuI | TTCGAA | 2 cut(s) | 268, 309 |
| SinI | GGWCC | 1 cut(s) | 66 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 392 |
| SnaBI | TACGTA | 1 cut(s) | 325 |
| SphI | GCATGC | 1 cut(s) | 36 |
| Sse9I | AATT | 4 cut(s) | 130, 264, 305, 539 |
| SsiI | CCGC | 2 cut(s) | 558, 585 |
| SspMI | CTAG | 1 cut(s) | 107 |
| StyD4I | CCNGG | 3 cut(s) | 234, 444, 550 |
| StyI | CCWWGG | 1 cut(s) | 97 |
| TaiI | ACGT | 1 cut(s) | 327 |
| TaqI | TCGA | 4 cut(s) | 256, 268, 309, 525 |
| TasI | AATT | 4 cut(s) | 130, 264, 305, 539 |
| TauI | GCSGC | 1 cut(s) | 588 |
| Tru1I | TTAA | 2 cut(s) | 480, 579 |
| Tru9I | TTAA | 2 cut(s) | 480, 579 |
| TscAI | CASTG | 1 cut(s) | 223 |
| TseFI | GTSAC | 2 cut(s) | 346, 659 |
| TseI | GCWGC | 1 cut(s) | 72 |
| Tsp45I | GTSAC | 2 cut(s) | 346, 659 |
| TspDTI | ATGAA | 1 cut(s) | 560 |
| TspRI | CASTG | 1 cut(s) | 223 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 75, 98 |
| VneI | GTGCAC | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 1 cut(s) | 66 |
| XapI | RAATTY | 1 cut(s) | 264 |
| XceI | RCATGY | 1 cut(s) | 36 |
| XmiI | GTMKAC | 3 cut(s) | 210, 498, 591 |
| XspI | CTAG | 1 cut(s) | 107 |