RchiOBHm_Chr1g0326341

transposition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000106
Physical Location & Seq
Forward (+)
14781141 .. 14783399
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55598

Sequence Viewer

Length: 2202 bp
ATGGCGGTACTCGTGGTTTTCAACATCGCGGTCGCGGTCGCACCTCCTCCTATCGAGATTTGTGAGCGTCAAGGTCACTCCGCGATTGACTGTTACAACCGAATGAATCATGCATATGTTGGCCGCATTCCACCGGCGAAACTCACCGCACTGTTTGCTGCTCCGACTACTCCGGTTGAAGCTCCGGTCGCCTTCGCAGCTCGGTCTTCCTCTGTTCTTCCTACACCGTCATTTTCACAAACAGTTCCTGTGCATCCTCCATACTCTCCAACCTCTCCAGGTTTCTCCTTCTTTCCTGCTCCGGTGGCCAACTCCACTTGGCTTGCTGATTCCGGTGCTAGTCAACATGTGACTCCTGATCTTTCTCAACTCTCCGAGGCCGCACCTTACTATGGTAACACTAAACTTACTGTTGGTAATGGTCAACATTTGCGCATTGCTCACATTGGCTCGGCCATTATGCACACACCATCTGCTTCTTTCCACATGAATAATGTTTTACATGTTCCGGAAATCACACAGAATCTGCTATCAGTAAATCGATTTGTATCTGATAACAATTGTGCTTTTGTACTCACTCCCTCTGGTTCAATGATCAAGGATTTGGGACTCAGGAGAACTCTTTCTCAAGGACCAGTGCGTGATGGTGTTTACCCCATCCACTTCAATTCATCTTCATCCTTGCTTCACTCCACCCCTTCACCACAGTCACCTCAAGTTCAATCTGCTTCTTTACTTTCTAGTGATGTATGGCATGCTCGTCTCGGTCATGCCAATTCTCAGGTTGTTAATAAGGTACTGCAGGCCATCAAGGTTCCAGCTGCTACTTCAAAACACTCTCTGTGTGTCTACTGTATGCAAGGCAAGGCTCACAGGCTTCCTTTCTCTCCTTCAAGTAGTATCTGCTCTGGACCTTTACAGCTTCTACATGCTGATGTTTGGGGCCCTGCTTCGATTTCTTCTACACTAGGGCATAGGTATTTTCTAAGCTTGGTTGATGACTGGTCCAAGTTTTGTTGGATTATACCATTGTTCAAGAAATCTGATGTACCTCTGGCTTTCCATATATTCAAATTACGTGTTGAAAATTTGCTCTCTACTTCAATTAAAACTTTGCGTAGTGATGGTGGTGGTGAATTTACCAGCAATAGCTTCAAACTTTATCTTACTCAGCATGGTATTCAACACCAATTAAGCTGTCCTCACACTCCACAACAAAACGGTGTTGTGGAACGCAAACACAGGCACATTATTGAAATGGCACGTACTATTCTTGCACAATCTCAATTACCTTATTCCTATTGGCTTCGTGCATGTCTCACAGCGACTTTTACCATCAACAGACTTCCTACTATGACCTCTAAGTCTCCTTTTGAAATTTTATACAACAAGGCACCTGATTATCAGTTTCTCAAACCTTTTGGTTGCCTCTGCTTCCCTTGGCTGCGTCCTTACACCACTCACAAGTTTGCACCACGCAGCAGCCCTTGTATTTTCATTGGTTACAGTCATGATCATAAGGGATATGATTGTCTTGATCCCATATCTGGCCGCATCTACACTTCTCGCCATGTTCAGTTTGATGAAACCTCTTTTCCATTTAAAACACACACTGCCCATACCTCCTCTTCTACTCATTCTGACCTTCCAATCTTTTTGCACCCCTACTCACCACCCATACCTACTACATCCCCTCTTTCTTCACAATCATTTCCCTCTATACCTACTCCACACACATCCTCTCCCACTCACCATTCTACGTCAACTTCACCTACTCTTATTCCATCACCTCGCTCTAATCCCTTACCTGCCATTCCCACTTCAGTCCCTTCCCCACCACCTATTCCAGCCCCACTTCCACCTAATCAACCACCACTCCCTAACACCTCTCGCCACATACTTAGACGTTCCACACCTGCCCCATCACCTCACAACATGCTCACTCGTTCCAAAACTGGTCACAGCAAACCTAAAGTTTTTTTTGCCACTAACCACCCATTACCCAAAGCTACTGCTCTTTTTGCCTCCTGCCCCATCACCCCTACATCTTACTCTCAAGCCTCGAAGTATCCTGCATGGACTGCTGCTATGAAAGAAGAGATTTCTGCTTTACAACACACCAACACATGGACTTTGGTTCCTCACCATCCCAATATGAATGTCGTTGGTTGCAAGTGGGTTTACCGGGTTCAGCAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HTH_21 rve

Protein Analysis

733

Amino Acids

80.49

Weight (kDa)

9.57

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 107 - 184 2.2e-15 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 235 - 289 1.3e-07 GAG-pre-integrase domain
rve PF00665 304 - 404 7.6e-13 Integrase core domain
SH3_retrovirus PF25597 476 - 537 3.9e-24 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1924
AasI GACNNNNNNGTC 1 cut(s) 1363
Acc16I TGCGCA 1 cut(s) 434
Acc36I ACCTGC 2 cut(s) 1816, 1924
AccB1I GGYRCC 1 cut(s) 1393
AccB7I CCANNNNNTGG 1 cut(s) 2127
AccI GTMKAC 1 cut(s) 849
AccII CGCG 3 cut(s) 29, 35, 83
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 9 cut(s) 5, 29, 35, 81, 124, 147, 381, 1552, 2197
AclWI GGATC 1 cut(s) 1532
AcoI YGGCCR 4 cut(s) 121, 306, 453, 1549
AcsI RAATTY 3 cut(s) 1087, 1136, 1377
AcuI CTGAAG 1 cut(s) 1806
AfaI GTAC 5 cut(s) 9, 573, 798, 1050, 1267
AfiI CCNNNNNNNGG 3 cut(s) 392, 1547, 2127
AflIII ACRYGT 3 cut(s) 346, 502, 1078
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 8 cut(s) 182, 200, 821, 922, 990, 1152, 1197, 2009
AluI AGCT 8 cut(s) 182, 200, 821, 922, 990, 1152, 1197, 2009
Alw26I GTCTC 3 cut(s) 767, 1322, 1371
AlwI GGATC 1 cut(s) 1532
AlwNI CAGNNNCTG 2 cut(s) 248, 526
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 7 cut(s) 121, 306, 378, 453, 804, 943, 1549
ApaI GGGCCC 1 cut(s) 947
ApeKI GCWGC 8 cut(s) 158, 197, 821, 1444, 1479, 1482, 2084, 2194
ApoI RAATTY 3 cut(s) 1087, 1136, 1377
Asp700I GAANNNNTTC 1 cut(s) 622
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 5 cut(s) 632, 911, 943, 944, 1005
AsuC2I CCSGG 1 cut(s) 2186
AvaII GGWCC 3 cut(s) 632, 911, 1005
BaeGI GKGCMC 1 cut(s) 947
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 1 cut(s) 1393
BanII GRGCYC 1 cut(s) 947
BauI CACGAG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 7 cut(s) 145, 209, 808, 1431, 1491, 1494, 2071
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 2079
BclI TGATCA 2 cut(s) 594, 1513
BcnI CCSGG 1 cut(s) 2186
BcoDI GTCTC 3 cut(s) 767, 1322, 1371
BfaI CTAG 3 cut(s) 339, 741, 968
BfmI CTRYAG 1 cut(s) 800
BfuAI ACCTGC 2 cut(s) 1816, 1924
BfuI GTATCC 1 cut(s) 2079
Bme1390I CCNGG 2 cut(s) 279, 2186
Bme18I GGWCC 3 cut(s) 632, 911, 1005
BmgT120I GGNCC 5 cut(s) 632, 911, 943, 944, 1005
BmiI GGNNCC 5 cut(s) 816, 944, 945, 1395, 2139
BmrFI CCNGG 2 cut(s) 279, 2186
BmsI GCATC 2 cut(s) 262, 1563
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 3 cut(s) 612, 699, 2040
BpuMI CCSGG 1 cut(s) 2186
Bsa29I ATCGAT 1 cut(s) 541
BsaAI YACGTR 2 cut(s) 1079, 1265
BsaBI GATNNNNATC 1 cut(s) 547
BsaJI CCNNGG 2 cut(s) 375, 1439
BsaWI WCCGGW 5 cut(s) 172, 184, 301, 332, 508
BsaXI ACNNNNNCTCC 4 cut(s) 1726, 1756, 1860, 1890
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 1547, 2127
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 635, 1007, 1960
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 547
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 2 cut(s) 375, 1439
BseGI GGATG 6 cut(s) 253, 657, 677, 1688, 1736, 2146
BseJI GATNNNNATC 1 cut(s) 547
BseLI CCNNNNNNNGG 3 cut(s) 392, 1547, 2127
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 625, 794, 1184
BseNI ACTGG 3 cut(s) 635, 1007, 1960
BseRI GAGGAG 2 cut(s) 36, 1615
BseSI GKGCMC 1 cut(s) 947
BseXI GCAGC 7 cut(s) 145, 209, 808, 1431, 1491, 1494, 2071
Bsh1236I CGCG 3 cut(s) 29, 35, 83
Bsh1285I CGRYCG 3 cut(s) 33, 39, 189
BshFI GGCC 7 cut(s) 123, 308, 380, 455, 806, 945, 1551
BshNI GGYRCC 1 cut(s) 1393
BshVI ATCGAT 1 cut(s) 541
BsiEI CGRYCG 3 cut(s) 33, 39, 189
BsiSI CCGG 7 cut(s) 134, 173, 185, 302, 333, 509, 2185
BslFI GGGAC 2 cut(s) 621, 1811
BslI CCNNNNNNNGG 3 cut(s) 392, 1547, 2127
BsmAI GTCTC 3 cut(s) 767, 1322, 1371
BsmBI CGTCTC 1 cut(s) 767
BsmFI GGGAC 2 cut(s) 621, 1811
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 7 cut(s) 123, 308, 380, 455, 806, 945, 1551
Bsp120I GGGCCC 1 cut(s) 943
Bsp1286I GDGCHC 1 cut(s) 947
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 358, 594, 1513, 1537
BspACI CCGC 9 cut(s) 5, 29, 35, 81, 124, 147, 381, 1552, 2197
BspANI GGCC 7 cut(s) 123, 308, 380, 455, 806, 945, 1551
BspCNI CTCAG 3 cut(s) 624, 793, 1183
BspDI ATCGAT 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 508
BspFNI CGCG 3 cut(s) 29, 35, 83
BspHI TCATGA 1 cut(s) 1510
BspLI GGNNCC 5 cut(s) 816, 944, 945, 1395, 2139
BspMAI CTGCAG 1 cut(s) 804
BspMI ACCTGC 2 cut(s) 1816, 1924
BspPI GGATC 1 cut(s) 1532
BspT107I GGYRCC 1 cut(s) 1393
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 3 cut(s) 635, 1007, 1960
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 375, 1439
BssMI GATC 4 cut(s) 358, 594, 1513, 1537
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 1439
Bst2BI CACGAG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 9 cut(s) 92, 153, 228, 244, 412, 708, 854, 1223, 1508
Bst6I CTCTTC 2 cut(s) 1633, 2091
BstAPI GCANNNNNTGC 2 cut(s) 155, 2081
BstBAI YACGTR 2 cut(s) 1079, 1265
BstC8I GCNNGC 3 cut(s) 324, 756, 804
BstDEI CTNAG 6 cut(s) 611, 780, 986, 1170, 1362, 1901
BstF5I GGATG 6 cut(s) 253, 657, 677, 1688, 1736, 2146
BstFNI CGCG 3 cut(s) 29, 35, 83
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 4 cut(s) 361, 597, 1516, 1540
BstMAI GTCTC 3 cut(s) 767, 1322, 1371
BstMBI GATC 4 cut(s) 358, 594, 1513, 1537
BstMCI CGRYCG 3 cut(s) 33, 39, 189
BstMWI GCNNNNNNNGC 6 cut(s) 155, 188, 197, 305, 2021, 2081
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 6 cut(s) 350, 506, 758, 932, 1317, 1939
BstSCI CCNGG 2 cut(s) 277, 2184
BstSFI CTRYAG 1 cut(s) 800
BstSLI GKGCMC 1 cut(s) 947
BstUI CGCG 3 cut(s) 29, 35, 83
BstV1I GCAGC 7 cut(s) 145, 209, 808, 1431, 1491, 1494, 2071
BstV2I GAAGAC 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 541
BsuI GTATCC 1 cut(s) 2079
BsuRI GGCC 7 cut(s) 123, 308, 380, 455, 806, 945, 1551
BsuTUI ATCGAT 1 cut(s) 541
BtgZI GCGATG 1 cut(s) 10
BtsCI GGATG 6 cut(s) 253, 657, 677, 1688, 1736, 2146
BtsI GCAGTG 1 cut(s) 1611
BtsIMutI CAGTG 3 cut(s) 149, 642, 1611
BveI ACCTGC 2 cut(s) 1816, 1924
Cac8I GCNNGC 3 cut(s) 324, 756, 804
CaiI CAGNNNCTG 2 cut(s) 248, 526
CciI TCATGA 1 cut(s) 1510
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 5 cut(s) 632, 911, 943, 944, 1005
ClaI ATCGAT 1 cut(s) 541
CseI GACGC 2 cut(s) 56, 1436
Csp6I GTAC 5 cut(s) 8, 572, 797, 1049, 1266
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviQI GTAC 5 cut(s) 8, 572, 797, 1049, 1266
DdeI CTNAG 6 cut(s) 611, 780, 986, 1170, 1362, 1901
DpnI GATC 4 cut(s) 360, 596, 1515, 1539
DpnII GATC 4 cut(s) 358, 594, 1513, 1537
DraI TTTAAA 1 cut(s) 1603
DrdI GACNNNNNNGTC 1 cut(s) 1363
DseDI GACNNNNNNGTC 1 cut(s) 1363
EaeI YGGCCR 4 cut(s) 121, 306, 453, 1549
Eam1104I CTCTTC 2 cut(s) 1633, 2091
EarI CTCTTC 2 cut(s) 1633, 2091
Eco130I CCWWGG 1 cut(s) 1439
Eco24I GRGCYC 1 cut(s) 947
Eco47I GGWCC 3 cut(s) 632, 911, 1005
Eco57I CTGAAG 1 cut(s) 1806
EcoO109I RGGNCCY 2 cut(s) 943, 944
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 1439
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 947
ErhI CCWWGG 1 cut(s) 1439
Esp3I CGTCTC 1 cut(s) 767
FaqI GGGAC 2 cut(s) 621, 1811
FauNDI CATATG 1 cut(s) 115
FbaI TGATCA 2 cut(s) 594, 1513
FblI GTMKAC 1 cut(s) 849
FokI GGATG 6 cut(s) 240, 644, 664, 1675, 1723, 2133
FriOI GRGCYC 1 cut(s) 947
FspBI CTAG 3 cut(s) 339, 741, 968
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 7 cut(s) 123, 308, 380, 455, 806, 945, 1551
HapII CCGG 7 cut(s) 134, 173, 185, 302, 333, 509, 2185
HgaI GACGC 2 cut(s) 56, 1436
HhaI GCGC 1 cut(s) 435
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 3 cut(s) 344, 425, 1764
HindII GTYRAC 3 cut(s) 344, 425, 1764
HindIII AAGCTT 1 cut(s) 988
HinfI GANTC 5 cut(s) 106, 329, 352, 523, 609
HpaII CCGG 7 cut(s) 134, 173, 185, 302, 333, 509, 2185
Hpy166II GTNNAC 6 cut(s) 344, 425, 652, 850, 1764, 2182
Hpy188I TCNGA 5 cut(s) 165, 376, 553, 1045, 1642
Hpy188III TCNNGA 8 cut(s) 55, 356, 509, 613, 909, 1036, 1511, 1535
Hpy8I GTNNAC 6 cut(s) 344, 425, 652, 850, 1764, 2182
HpyAV CCTTC 6 cut(s) 202, 298, 708, 900, 1655, 1839
HpyCH4III ACNGT 9 cut(s) 92, 153, 228, 244, 412, 708, 854, 1223, 1508
HpyCH4IV ACGT 4 cut(s) 1078, 1264, 1760, 1906
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 188, 197, 305, 2021, 2081
HpyF3I CTNAG 6 cut(s) 611, 780, 986, 1170, 1362, 1901
HpySE526I ACGT 4 cut(s) 1078, 1264, 1760, 1906
HspAI GCGC 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 508
Ksp22I TGATCA 2 cut(s) 594, 1513
Kzo9I GATC 4 cut(s) 358, 594, 1513, 1537
LmnI GCTCC 3 cut(s) 166, 187, 304
Lsp1109I GCAGC 7 cut(s) 145, 209, 808, 1431, 1491, 1494, 2071
LweI GCATC 2 cut(s) 262, 1563
MaeI CTAG 3 cut(s) 339, 741, 968
MaeII ACGT 4 cut(s) 1078, 1264, 1760, 1906
MaeIII GTNAC 7 cut(s) 74, 92, 349, 395, 708, 1502, 1958
MalI GATC 4 cut(s) 360, 596, 1515, 1539
MboI GATC 4 cut(s) 358, 594, 1513, 1537
MboII GAAGA 7 cut(s) 198, 209, 666, 951, 1620, 1692, 2108
MfeI CAATTG 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 947
MlsI TGGCCA 1 cut(s) 308
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 2 cut(s) 346, 603
MmeI TCCRAC 3 cut(s) 188, 293, 998
Mox20I TGGCCA 1 cut(s) 308
Mph1103I ATGCAT 1 cut(s) 115
MroI TCCGGA 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 622
MscI TGGCCA 1 cut(s) 308
MseI TTAA 4 cut(s) 789, 1107, 1193, 1602
MslI CAYNNNNRTG 2 cut(s) 114, 933
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 821, 2197
MspI CCGG 7 cut(s) 134, 173, 185, 302, 333, 509, 2185
MspR9I CCNGG 2 cut(s) 279, 2186
MunI CAATTG 1 cut(s) 559
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 3 cut(s) 29, 35, 83
MwoI GCNNNNNNNGC 6 cut(s) 155, 188, 197, 305, 2021, 2081
NciI CCSGG 1 cut(s) 2186
NdeI CATATG 1 cut(s) 115
NdeII GATC 4 cut(s) 358, 594, 1513, 1537
NlaIV GGNNCC 5 cut(s) 816, 944, 945, 1395, 2139
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 4 cut(s) 74, 349, 708, 1958
NsbI TGCGCA 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 6 cut(s) 350, 506, 758, 932, 1317, 1939
PaeI GCATGC 1 cut(s) 758
PagI TCATGA 1 cut(s) 1510
PaqCI CACCTGC 1 cut(s) 1924
PciI ACATGT 2 cut(s) 346, 502
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 3 cut(s) 106, 329, 523
PflMI CCANNNNNTGG 1 cut(s) 2127
PleI GAGTC 2 cut(s) 346, 603
PpsI GAGTC 2 cut(s) 346, 603
Ppu21I YACGTR 2 cut(s) 1079, 1265
PscI ACATGT 2 cut(s) 346, 502
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 5 cut(s) 816, 944, 945, 1395, 2139
PspOMI GGGCCC 1 cut(s) 943
PspPI GGNCC 5 cut(s) 632, 911, 943, 944, 1005
PstI CTGCAG 1 cut(s) 804
PstNI CAGNNNCTG 2 cut(s) 248, 526
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 5 cut(s) 9, 573, 798, 1050, 1267
RsaNI GTAC 5 cut(s) 8, 572, 797, 1049, 1266
RseI CAYNNNNRTG 2 cut(s) 114, 933
SaqAI TTAA 4 cut(s) 789, 1107, 1193, 1602
Sau3AI GATC 4 cut(s) 358, 594, 1513, 1537
Sau96I GGNCC 5 cut(s) 632, 911, 943, 944, 1005
SchI GAGTC 2 cut(s) 346, 603
ScrFI CCNGG 2 cut(s) 279, 2186
SduI GDGCHC 1 cut(s) 947
SfaNI GCATC 2 cut(s) 262, 1563
SfcI CTRYAG 1 cut(s) 800
SgrAI CRCCGGYG 1 cut(s) 133
SinI GGWCC 3 cut(s) 632, 911, 1005
SmiMI CAYNNNNRTG 2 cut(s) 114, 933
SmlI CTYRAG 3 cut(s) 627, 714, 2055
SmoI CTYRAG 3 cut(s) 627, 714, 2055
SphI GCATGC 1 cut(s) 758
SsiI CCGC 9 cut(s) 5, 29, 35, 81, 124, 147, 381, 1552, 2197
SspMI CTAG 3 cut(s) 339, 741, 968
StyD4I CCNGG 2 cut(s) 277, 2184
StyI CCWWGG 1 cut(s) 1439
TaaI ACNGT 9 cut(s) 92, 153, 228, 244, 412, 708, 854, 1223, 1508
TaiI ACGT 4 cut(s) 1081, 1267, 1763, 1909
TaqI TCGA 4 cut(s) 54, 541, 953, 2063
TaqII GACCGA 2 cut(s) 192, 755
TatI WGTACW 1 cut(s) 571
TauI GCSGC 3 cut(s) 126, 383, 1554
TfiI GAWTC 3 cut(s) 106, 329, 523
Tru1I TTAA 4 cut(s) 789, 1107, 1193, 1602
Tru9I TTAA 4 cut(s) 789, 1107, 1193, 1602
TscAI CASTG 3 cut(s) 156, 642, 1618
TseFI GTSAC 4 cut(s) 74, 349, 708, 1958
TseI GCWGC 8 cut(s) 158, 197, 821, 1444, 1479, 1482, 2084, 2194
Tsp45I GTSAC 4 cut(s) 74, 349, 708, 1958
TspDTI ATGAA 8 cut(s) 119, 503, 660, 666, 1486, 1599, 2105, 2171
TspRI CASTG 3 cut(s) 156, 642, 1618
Van91I CCANNNNNTGG 1 cut(s) 2127
VpaK11BI GGWCC 3 cut(s) 632, 911, 1005
XapI RAATTY 3 cut(s) 1087, 1136, 1377
XceI RCATGY 6 cut(s) 350, 506, 758, 932, 1317, 1939
XmiI GTMKAC 1 cut(s) 849
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 3 cut(s) 339, 741, 968
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.