gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 984 |
| AcsI | RAATTY | 3 cut(s) | 55, 678, 1110 |
| AfaI | GTAC | 4 cut(s) | 34, 311, 319, 1026 |
| AflII | CTTAAG | 1 cut(s) | 496 |
| AflIII | ACRYGT | 1 cut(s) | 774 |
| AleI | CACNNNNGTG | 1 cut(s) | 699 |
| AluBI | AGCT | 3 cut(s) | 9, 15, 212 |
| AluI | AGCT | 3 cut(s) | 9, 15, 212 |
| Alw21I | GWGCWC | 1 cut(s) | 1049 |
| Alw26I | GTCTC | 2 cut(s) | 266, 466 |
| Alw44I | GTGCAC | 1 cut(s) | 1045 |
| AlwI | GGATC | 1 cut(s) | 984 |
| ApaLI | GTGCAC | 1 cut(s) | 1045 |
| ApeKI | GCWGC | 3 cut(s) | 627, 794, 840 |
| ApoI | RAATTY | 3 cut(s) | 55, 678, 1110 |
| AsuC2I | CCSGG | 1 cut(s) | 1022 |
| AsuHPI | GGTGA | 3 cut(s) | 368, 679, 935 |
| BaeGI | GKGCMC | 1 cut(s) | 1049 |
| BauI | CACGAG | 1 cut(s) | 286 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 1 cut(s) | 1049 |
| BbvI | GCAGC | 3 cut(s) | 639, 806, 827 |
| BccI | CCATC | 6 cut(s) | 119, 169, 562, 761, 1089, 1096 |
| BclI | TGATCA | 1 cut(s) | 897 |
| BcnI | CCSGG | 1 cut(s) | 1022 |
| BcoDI | GTCTC | 2 cut(s) | 266, 466 |
| BfaI | CTAG | 5 cut(s) | 116, 299, 342, 381, 428 |
| BfrI | CTTAAG | 1 cut(s) | 496 |
| BisI | GCNGC | 3 cut(s) | 628, 795, 841 |
| BlsI | GCNGC | 3 cut(s) | 629, 796, 842 |
| Bme1390I | CCNGG | 1 cut(s) | 1022 |
| BmiI | GGNNCC | 1 cut(s) | 966 |
| BmrFI | CCNGG | 1 cut(s) | 1022 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| BpmI | CTGGAG | 1 cut(s) | 88 |
| Bpu10I | CCTNAGC | 1 cut(s) | 596 |
| BpuMI | CCSGG | 1 cut(s) | 1022 |
| BsaI | GGTCTC | 1 cut(s) | 466 |
| BsaJI | CCNNGG | 1 cut(s) | 226 |
| Bse3DI | GCAATG | 1 cut(s) | 925 |
| BseDI | CCNNGG | 1 cut(s) | 226 |
| BseGI | GGATG | 2 cut(s) | 208, 298 |
| BseMI | GCAATG | 1 cut(s) | 925 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 1049 |
| BseXI | GCAGC | 3 cut(s) | 639, 806, 827 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1049 |
| BsiSI | CCGG | 2 cut(s) | 140, 1022 |
| BsmAI | GTCTC | 2 cut(s) | 266, 466 |
| Bso31I | GGTCTC | 1 cut(s) | 466 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1049 |
| Bsp143I | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| BspLI | GGNNCC | 1 cut(s) | 966 |
| BspPI | GGATC | 1 cut(s) | 984 |
| BspQI | GCTCTTC | 1 cut(s) | 617 |
| BspTI | CTTAAG | 1 cut(s) | 496 |
| BspTNI | GGTCTC | 1 cut(s) | 466 |
| BsrDI | GCAATG | 1 cut(s) | 925 |
| BssECI | CCNNGG | 1 cut(s) | 226 |
| BssMI | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| BssSI | CACGAG | 1 cut(s) | 286 |
| BssT1I | CCWWGG | 1 cut(s) | 226 |
| Bst2BI | CACGAG | 1 cut(s) | 286 |
| Bst6I | CTCTTC | 2 cut(s) | 300, 617 |
| BstAFI | CTTAAG | 1 cut(s) | 496 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 555 |
| BstDEI | CTNAG | 4 cut(s) | 238, 324, 590, 596 |
| BstEII | GGTNACC | 1 cut(s) | 1016 |
| BstF5I | GGATG | 2 cut(s) | 208, 298 |
| BstKTI | GATC | 5 cut(s) | 106, 538, 900, 928, 979 |
| BstMAI | GTCTC | 2 cut(s) | 266, 466 |
| BstMBI | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 791 |
| BstNSI | RCATGY | 2 cut(s) | 675, 778 |
| BstPI | GGTNACC | 1 cut(s) | 1016 |
| BstSCI | CCNGG | 1 cut(s) | 1020 |
| BstSLI | GKGCMC | 1 cut(s) | 1049 |
| BstV1I | GCAGC | 3 cut(s) | 639, 806, 827 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 877, 1095 |
| BtsCI | GGATG | 2 cut(s) | 208, 298 |
| BtsI | GCAGTG | 1 cut(s) | 637 |
| BtsIMutI | CAGTG | 1 cut(s) | 637 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 555 |
| Csp6I | GTAC | 4 cut(s) | 33, 310, 318, 1025 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 664, 699 |
| CviAII | CATG | 5 cut(s) | 193, 457, 672, 775, 1143 |
| CviQI | GTAC | 4 cut(s) | 33, 310, 318, 1025 |
| DdeI | CTNAG | 4 cut(s) | 238, 324, 590, 596 |
| DpnI | GATC | 5 cut(s) | 105, 537, 899, 927, 978 |
| DpnII | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| DraI | TTTAAA | 1 cut(s) | 715 |
| Eam1104I | CTCTTC | 2 cut(s) | 300, 617 |
| EarI | CTCTTC | 2 cut(s) | 300, 617 |
| Eco130I | CCWWGG | 1 cut(s) | 226 |
| Eco31I | GGTCTC | 1 cut(s) | 466 |
| Eco91I | GGTNACC | 1 cut(s) | 1016 |
| EcoO65I | GGTNACC | 1 cut(s) | 1016 |
| EcoT14I | CCWWGG | 1 cut(s) | 226 |
| ErhI | CCWWGG | 1 cut(s) | 226 |
| FaeI | CATG | 5 cut(s) | 196, 460, 675, 778, 1146 |
| FatI | CATG | 5 cut(s) | 192, 456, 671, 774, 1142 |
| FauNDI | CATATG | 1 cut(s) | 852 |
| FbaI | TGATCA | 1 cut(s) | 897 |
| Fnu4HI | GCNGC | 3 cut(s) | 628, 795, 841 |
| FokI | GGATG | 2 cut(s) | 215, 305 |
| Fsp4HI | GCNGC | 3 cut(s) | 628, 795, 841 |
| FspBI | CTAG | 5 cut(s) | 116, 299, 342, 381, 428 |
| GluI | GCNGC | 3 cut(s) | 628, 795, 841 |
| GsuI | CTGGAG | 1 cut(s) | 88 |
| HapII | CCGG | 2 cut(s) | 140, 1022 |
| Hin1II | CATG | 5 cut(s) | 196, 460, 675, 778, 1146 |
| HinfI | GANTC | 3 cut(s) | 72, 359, 942 |
| HpaII | CCGG | 2 cut(s) | 140, 1022 |
| HphI | GGTGA | 3 cut(s) | 368, 679, 935 |
| Hpy166II | GTNNAC | 2 cut(s) | 400, 1047 |
| Hpy188III | TCNNGA | 9 cut(s) | 67, 76, 299, 365, 428, 758, 968, 1007, 1092 |
| Hpy8I | GTNNAC | 2 cut(s) | 400, 1047 |
| HpyAV | CCTTC | 3 cut(s) | 146, 193, 995 |
| HpyCH4V | TGCA | 5 cut(s) | 218, 675, 843, 1047, 1074 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 791 |
| HpyF3I | CTNAG | 4 cut(s) | 238, 324, 590, 596 |
| Hsp92II | CATG | 5 cut(s) | 196, 460, 675, 778, 1146 |
| Ksp22I | TGATCA | 1 cut(s) | 897 |
| Kzo9I | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| LguI | GCTCTTC | 1 cut(s) | 617 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 6 cut(s) | 52, 153, 730, 888, 981, 1035 |
| Lsp1109I | GCAGC | 3 cut(s) | 639, 806, 827 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeI | CTAG | 5 cut(s) | 116, 299, 342, 381, 428 |
| MaeIII | GTNAC | 3 cut(s) | 667, 1016, 1138 |
| MalI | GATC | 5 cut(s) | 105, 537, 899, 927, 978 |
| MboI | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| MhlI | GDGCHC | 1 cut(s) | 1049 |
| MluCI | AATT | 5 cut(s) | 55, 678, 971, 1039, 1110 |
| MmeI | TCCRAC | 1 cut(s) | 28 |
| MnlI | CCTC | 4 cut(s) | 75, 101, 262, 295 |
| MseI | TTAA | 2 cut(s) | 497, 714 |
| MslI | CAYNNNNRTG | 3 cut(s) | 699, 875, 1093 |
| MspCI | CTTAAG | 1 cut(s) | 496 |
| MspI | CCGG | 2 cut(s) | 140, 1022 |
| MspR9I | CCNGG | 1 cut(s) | 1022 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 791 |
| NciI | CCSGG | 1 cut(s) | 1022 |
| NdeI | CATATG | 1 cut(s) | 852 |
| NdeII | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| NlaIII | CATG | 5 cut(s) | 196, 460, 675, 778, 1146 |
| NlaIV | GGNNCC | 1 cut(s) | 966 |
| NmuCI | GTSAC | 1 cut(s) | 667 |
| NspI | RCATGY | 2 cut(s) | 675, 778 |
| OliI | CACNNNNGTG | 1 cut(s) | 699 |
| PciI | ACATGT | 1 cut(s) | 774 |
| PciSI | GCTCTTC | 1 cut(s) | 617 |
| PfeI | GAWTC | 3 cut(s) | 72, 359, 942 |
| PkrI | GCNGC | 3 cut(s) | 629, 796, 842 |
| PscI | ACATGT | 1 cut(s) | 774 |
| PspEI | GGTNACC | 1 cut(s) | 1016 |
| PspN4I | GGNNCC | 1 cut(s) | 966 |
| RsaI | GTAC | 4 cut(s) | 34, 311, 319, 1026 |
| RsaNI | GTAC | 4 cut(s) | 33, 310, 318, 1025 |
| RseI | CAYNNNNRTG | 3 cut(s) | 699, 875, 1093 |
| SapI | GCTCTTC | 1 cut(s) | 617 |
| SaqAI | TTAA | 2 cut(s) | 497, 714 |
| SatI | GCNGC | 3 cut(s) | 628, 795, 841 |
| Sau3AI | GATC | 5 cut(s) | 103, 535, 897, 925, 976 |
| ScrFI | CCNGG | 1 cut(s) | 1022 |
| SduI | GDGCHC | 1 cut(s) | 1049 |
| SetI | ASST | 9 cut(s) | 11, 17, 157, 214, 319, 497, 545, 749, 987 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 699, 875, 1093 |
| SmlI | CTYRAG | 3 cut(s) | 10, 16, 496 |
| SmoI | CTYRAG | 3 cut(s) | 10, 16, 496 |
| Sse9I | AATT | 5 cut(s) | 55, 678, 971, 1039, 1110 |
| SspI | AATATT | 1 cut(s) | 42 |
| SspMI | CTAG | 5 cut(s) | 116, 299, 342, 381, 428 |
| StyD4I | CCNGG | 1 cut(s) | 1020 |
| StyI | CCWWGG | 1 cut(s) | 226 |
| TaqI | TCGA | 4 cut(s) | 60, 120, 132, 188 |
| TasI | AATT | 5 cut(s) | 55, 678, 971, 1039, 1110 |
| TatI | WGTACW | 1 cut(s) | 309 |
| TfiI | GAWTC | 3 cut(s) | 72, 359, 942 |
| Tru1I | TTAA | 2 cut(s) | 497, 714 |
| Tru9I | TTAA | 2 cut(s) | 497, 714 |
| TscAI | CASTG | 1 cut(s) | 637 |
| TseFI | GTSAC | 1 cut(s) | 667 |
| TseI | GCWGC | 3 cut(s) | 627, 794, 840 |
| Tsp45I | GTSAC | 1 cut(s) | 667 |
| TspDTI | ATGAA | 7 cut(s) | 209, 258, 362, 422, 445, 934, 1071 |
| TspGWI | ACGGA | 1 cut(s) | 164 |
| TspRI | CASTG | 1 cut(s) | 637 |
| Vha464I | CTTAAG | 1 cut(s) | 496 |
| VneI | GTGCAC | 1 cut(s) | 1045 |
| XapI | RAATTY | 3 cut(s) | 55, 678, 1110 |
| XbaI | TCTAGA | 2 cut(s) | 298, 427 |
| XceI | RCATGY | 2 cut(s) | 675, 778 |
| XspI | CTAG | 5 cut(s) | 116, 299, 342, 381, 428 |