FvH4_7g32173

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000106
Physical Location & Seq
Forward (+)
23159184 .. 23160815
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32173.t1

Sequence Viewer

Length: 1632 bp
ATGCATATAGGTGAATGTTGGTTTAAGGGGAAGCCAAAATGTTCAATTTGTAACAAGTTTGGTCATGTCAAGAAGGATTGTGACTACAAAGGAAATCAACTGGCTAACTGCAGTGAAGAACAAAGTGATGCTAGCATGTTCTGTGTCACTTATGCTGTAACCACTGTGGTGAATGAGAATGTGTGGCTTGTTGATAGTGCTTGCAGTAATCATATGACTGCAAATGCCAACCTTCTCTATGACATTGACTACAACAACATTACAAAGGTGAAGATGGCAAATGGAATGTTGGTGGATACAAAAGGCAAAGGAAGTGTTGCTGTTGAAACCAAAAATGGAAAAATGTTCATCAGAGATGTAATGCTTGGTCCAAATCTTGATTCGAATTTGCTAAGTGTTGGACAACTCGTTGAGCATAAATATCACCTGCATTTTGGTGATGACACTTGCAAAATCTTTGAGAGAGGGAGTAGCAAGAAGCTGATGGTGGAAGTTGAAATGAAGAGGAACAAAAGTTTTCCTCTGACTTTCAAGTATGCAACTGAGAGTGCAAGAAAAATGGAGCTGCATGAAGATCCTTGGCTTTGGCATCAAAGGCTTGGACATTTGAATTTTCAAAGTCTGAAGCTGCTGCATCAGAATGAAATGGTGCAGGGATTGCCAAAAATTAAAGAAGTTACTAAAGTGTGTGAAGGATGTGCACTTGGAAAACATCACATTATCTTATTTCCAAAAGGGAAGGCATGGAGAGCAAAAACACCACTAGAGTTGGTCCATTCTGATGTCTGTGGTCCTATGAAAATAATTACTGGGGGAGGTAACAGATATTTCCTTACATTCATTGATGATTATTCAAGAATGATTTGGGTTTATTTCCTGAGGCACAAATCTGATGTGTTCAAGAAGTTTCAAGCTATGGTAGAGAGACAATCTGATCTCAAAATCAAGAAGCTTAGATCAGATAGAGGTGGTGAATACACATCAAATGAGTTTGGAGATTTTTGTGCATATATTGGTCTGGAGAGCCAGCTTACAGTAAGCTACACACCGCAGCAAAATGGGGTAGCTGAAAGGAGAAATAGAACAATCGTCGAAATGGCGAAGTCTATGCTGCATGCCAAGAAAGTGCCTCTAGAATACTGGGGAGAAGCAATTAATACTGTGGTGTATTTGATGAACAGATATCCAACTACTGCAGTGCAGGGAATGACACCATTTGAAGCATGGAGTGGAAGGAAGCCAAGTGTTAATCACTTGAGGGTGTTTGGTTCAATTTGCTATGCACATATCCCAAAGGTGTTGAGGAAGAAGCTTGATGAATCAAGTGAGAAGTCTGTGTTCATGGGATACAGCTTGCACACAAAGGGCTATAGGCTCTATAATATGAAAAAGAAGAAAATTGTTATTTGCAAAGATGTACTCTTCAGTGAGAATTCATCTTGGGATTGGAATCAAAGTTCAGTCCAGCAACAATGTGTGCTAGATAATGCTGTTCAAGATGAAGATGTTCCAGAAGGGTTGGAACTTAATCCACCGCAACAAACTCCACCTCACAGTCCTGATCAACCCTCACCAGCACATTCAAATGCTCAATCTACACCAAGAAGGATGAGAAGCTTGAATGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 Retrotran_gag_2 gag_pre-integrs zf-CCHC

Protein Analysis

544

Amino Acids

62.02

Weight (kDa)

9.01

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 62 - 141 1e-20 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 190 - 238 4.2e-16 GAG-pre-integrase domain
rve PF00665 253 - 350 2.2e-15 Integrase core domain
SH3_retrovirus PF25597 424 - 487 7e-23 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 435
AciI CCGC 2 cut(s) 1049, 1535
AclWI GGATC 1 cut(s) 569
AcsI RAATTY 3 cut(s) 385, 610, 1432
AcuI CTGAAG 2 cut(s) 644, 1408
AfaI GTAC 1 cut(s) 1419
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AleI CACNNNNGTG 1 cut(s) 167
AloI GAACNNNNNNTCC 2 cut(s) 1441, 1473
Alw21I GWGCWC 1 cut(s) 703
Alw26I GTCTC 1 cut(s) 919
Alw44I GTGCAC 1 cut(s) 699
AlwI GGATC 1 cut(s) 569
ApaLI GTGCAC 1 cut(s) 699
ApeKI GCWGC 5 cut(s) 565, 628, 631, 1051, 1111
ApoI RAATTY 3 cut(s) 385, 610, 1432
AseI ATTAAT 1 cut(s) 1155
Asp700I GAANNNNTTC 1 cut(s) 1506
AspS9I GGNCC 3 cut(s) 368, 772, 791
AsuHPI GGTGA 7 cut(s) 23, 181, 280, 416, 449, 983, 1563
AsuII TTCGAA 1 cut(s) 383
AsuNHI GCTAGC 1 cut(s) 131
AvaII GGWCC 3 cut(s) 368, 772, 791
AxyI CCTNAGG 1 cut(s) 878
BaeGI GKGCMC 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 5 cut(s) 552, 615, 618, 1063, 1098
BccI CCATC 2 cut(s) 268, 478
BcgI CGANNNNNNTGC 2 cut(s) 1090, 1124
BciVI GTATCC 2 cut(s) 289, 1340
BclI TGATCA 1 cut(s) 1561
BcoDI GTCTC 1 cut(s) 919
BfaI CTAG 4 cut(s) 132, 764, 1133, 1481
BfmI CTRYAG 3 cut(s) 109, 1194, 1369
BfuAI ACCTGC 1 cut(s) 435
BfuI GTATCC 2 cut(s) 289, 1340
BisI GCNGC 5 cut(s) 566, 629, 632, 1052, 1112
BlsI GCNGC 5 cut(s) 567, 630, 633, 1053, 1113
Bme18I GGWCC 3 cut(s) 368, 772, 791
BmgT120I GGNCC 3 cut(s) 368, 772, 791
BmrI ACTGGG 2 cut(s) 819, 1150
BmsI GCATC 3 cut(s) 118, 598, 643
BmtI GCTAGC 1 cut(s) 135
BmuI ACTGGG 2 cut(s) 819, 1150
BpmI CTGGAG 1 cut(s) 1040
Bpu14I TTCGAA 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 1276
BsaBI GATNNNNATC 1 cut(s) 1449
BsaJI CCNNGG 1 cut(s) 578
Bse1I ACTGG 3 cut(s) 105, 814, 1145
Bse21I CCTNAGG 1 cut(s) 878
Bse8I GATNNNNATC 1 cut(s) 1449
BseDI CCNNGG 1 cut(s) 578
BseGI GGATG 2 cut(s) 701, 1614
BseJI GATNNNNATC 1 cut(s) 1449
BseMII CTCAG 2 cut(s) 534, 869
BseNI ACTGG 3 cut(s) 105, 814, 1145
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 5 cut(s) 552, 615, 618, 1063, 1098
BsgI GTGCAG 2 cut(s) 671, 1220
BsiHKAI GWGCWC 1 cut(s) 703
BsmAI GTCTC 1 cut(s) 919
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 703
Bsp143I GATC 4 cut(s) 574, 934, 956, 1561
BspACI CCGC 2 cut(s) 1049, 1535
BspCNI CTCAG 2 cut(s) 535, 870
BspMAI CTGCAG 2 cut(s) 113, 1198
BspMI ACCTGC 1 cut(s) 435
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 569
BspT104I TTCGAA 1 cut(s) 383
BsrI ACTGG 3 cut(s) 105, 814, 1145
BssECI CCNNGG 1 cut(s) 578
BssMI GATC 4 cut(s) 574, 934, 956, 1561
BssT1I CCWWGG 1 cut(s) 578
Bst4CI ACNGT 4 cut(s) 166, 1036, 1162, 1556
Bst6I CTCTTC 2 cut(s) 497, 1427
BstAPI GCANNNNNTGC 1 cut(s) 658
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 5 cut(s) 133, 202, 1028, 1116, 1355
BstDEI CTNAG 4 cut(s) 392, 543, 878, 953
BstF5I GGATG 2 cut(s) 701, 1614
BstKTI GATC 4 cut(s) 577, 937, 959, 1564
BstMAI GTCTC 1 cut(s) 919
BstMBI GATC 4 cut(s) 574, 934, 956, 1561
BstMWI GCNNNNNNNGC 3 cut(s) 595, 658, 749
BstNSI RCATGY 2 cut(s) 139, 1118
BstSFI CTRYAG 3 cut(s) 109, 1194, 1369
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 5 cut(s) 552, 615, 618, 1063, 1098
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
Bsu36I CCTNAGG 1 cut(s) 878
BsuI GTATCC 2 cut(s) 289, 1340
BtsCI GGATG 2 cut(s) 701, 1614
BtsI GCAGTG 2 cut(s) 118, 1203
BtsIMutI CAGTG 4 cut(s) 118, 162, 1203, 1432
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 5 cut(s) 133, 202, 1028, 1116, 1355
Cfr13I GGNCC 3 cut(s) 368, 772, 791
Csp6I GTAC 1 cut(s) 1418
CspCI CAANNNNNGTGG 2 cut(s) 750, 785
CviAII CATG 7 cut(s) 65, 136, 569, 744, 1115, 1224, 1342
CviQI GTAC 1 cut(s) 1418
DdeI CTNAG 4 cut(s) 392, 543, 878, 953
DpnI GATC 4 cut(s) 576, 936, 958, 1563
DpnII GATC 4 cut(s) 574, 934, 956, 1561
Eam1104I CTCTTC 2 cut(s) 497, 1427
EarI CTCTTC 2 cut(s) 497, 1427
Eco130I CCWWGG 1 cut(s) 578
Eco32I GATATC 1 cut(s) 1184
Eco47I GGWCC 3 cut(s) 368, 772, 791
Eco57I CTGAAG 2 cut(s) 644, 1408
Eco81I CCTNAGG 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 1432
EcoRV GATATC 1 cut(s) 1184
EcoT14I CCWWGG 1 cut(s) 578
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 7 cut(s) 68, 139, 572, 747, 1118, 1227, 1345
FatI CATG 7 cut(s) 64, 135, 568, 743, 1114, 1223, 1341
FauNDI CATATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 1561
Fnu4HI GCNGC 5 cut(s) 566, 629, 632, 1052, 1112
FokI GGATG 2 cut(s) 708, 1621
Fsp4HI GCNGC 5 cut(s) 566, 629, 632, 1052, 1112
FspBI CTAG 4 cut(s) 132, 764, 1133, 1481
GluI GCNGC 5 cut(s) 566, 629, 632, 1052, 1112
GsuI CTGGAG 1 cut(s) 1040
Hin1II CATG 7 cut(s) 68, 139, 572, 747, 1118, 1227, 1345
HindIII AAGCTT 3 cut(s) 950, 1310, 1615
HinfI GANTC 3 cut(s) 380, 1319, 1450
HphI GGTGA 7 cut(s) 23, 181, 280, 416, 449, 983, 1563
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 8 cut(s) 353, 525, 624, 639, 781, 892, 934, 961
Hpy8I GTNNAC 1 cut(s) 701
Hpy99I CGWCG 1 cut(s) 1094
HpyAV CCTTC 7 cut(s) 67, 242, 686, 733, 1227, 1508, 1599
HpyCH4III ACNGT 4 cut(s) 166, 1036, 1162, 1556
HpyF10VI GCNNNNNNNGC 3 cut(s) 595, 658, 749
HpyF3I CTNAG 4 cut(s) 392, 543, 878, 953
Hsp92II CATG 7 cut(s) 68, 139, 572, 747, 1118, 1227, 1345
Ksp22I TGATCA 1 cut(s) 1561
Kzo9I GATC 4 cut(s) 574, 934, 956, 1561
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 5 cut(s) 552, 615, 618, 1063, 1098
LweI GCATC 3 cut(s) 118, 598, 643
MaeI CTAG 4 cut(s) 132, 764, 1133, 1481
MaeIII GTNAC 6 cut(s) 50, 80, 145, 157, 676, 818
MalI GATC 4 cut(s) 576, 936, 958, 1563
MboI GATC 4 cut(s) 574, 934, 956, 1561
MboII GAAGA 8 cut(s) 128, 283, 514, 584, 1318, 1405, 1414, 1514
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 703
MluCI AATT 9 cut(s) 45, 385, 610, 666, 804, 1152, 1272, 1398, 1432
MmeI TCCRAC 3 cut(s) 379, 1211, 1500
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1506
MseI TTAA 5 cut(s) 24, 669, 1155, 1248, 1527
MslI CAYNNNNRTG 6 cut(s) 9, 167, 435, 639, 780, 1584
MwoI GCNNNNNNNGC 3 cut(s) 595, 658, 749
NdeI CATATG 1 cut(s) 213
NdeII GATC 4 cut(s) 574, 934, 956, 1561
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 7 cut(s) 68, 139, 572, 747, 1118, 1227, 1345
NmuCI GTSAC 2 cut(s) 80, 145
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 139, 1118
NspV TTCGAA 1 cut(s) 383
OliI CACNNNNGTG 1 cut(s) 167
PaeI GCATGC 1 cut(s) 1118
PaqCI CACCTGC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 1506
PfeI GAWTC 3 cut(s) 380, 1319, 1450
PkrI GCNGC 5 cut(s) 567, 630, 633, 1053, 1113
PshBI ATTAAT 1 cut(s) 1155
PspPI GGNCC 3 cut(s) 368, 772, 791
PstI CTGCAG 2 cut(s) 113, 1198
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 1 cut(s) 1419
RsaNI GTAC 1 cut(s) 1418
RseI CAYNNNNRTG 6 cut(s) 9, 167, 435, 639, 780, 1584
SaqAI TTAA 5 cut(s) 24, 669, 1155, 1248, 1527
SatI GCNGC 5 cut(s) 566, 629, 632, 1052, 1112
Sau3AI GATC 4 cut(s) 574, 934, 956, 1561
Sau96I GGNCC 3 cut(s) 368, 772, 791
SduI GDGCHC 1 cut(s) 703
SfaNI GCATC 3 cut(s) 118, 598, 643
SfcI CTRYAG 3 cut(s) 109, 1194, 1369
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 3 cut(s) 368, 772, 791
SmiMI CAYNNNNRTG 6 cut(s) 9, 167, 435, 639, 780, 1584
SmlI CTYRAG 1 cut(s) 1255
SmoI CTYRAG 1 cut(s) 1255
SphI GCATGC 1 cut(s) 1118
Sse9I AATT 9 cut(s) 45, 385, 610, 666, 804, 1152, 1272, 1398, 1432
SsiI CCGC 2 cut(s) 1049, 1535
SspMI CTAG 4 cut(s) 132, 764, 1133, 1481
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 4 cut(s) 166, 1036, 1162, 1556
TaqI TCGA 2 cut(s) 383, 1092
TasI AATT 9 cut(s) 45, 385, 610, 666, 804, 1152, 1272, 1398, 1432
TatI WGTACW 1 cut(s) 1417
TfiI GAWTC 3 cut(s) 380, 1319, 1450
Tru1I TTAA 5 cut(s) 24, 669, 1155, 1248, 1527
Tru9I TTAA 5 cut(s) 24, 669, 1155, 1248, 1527
TscAI CASTG 4 cut(s) 118, 169, 1203, 1432
TseFI GTSAC 2 cut(s) 80, 145
TseI GCWGC 5 cut(s) 565, 628, 631, 1051, 1111
Tsp45I GTSAC 2 cut(s) 80, 145
TspRI CASTG 4 cut(s) 118, 169, 1203, 1432
VneI GTGCAC 1 cut(s) 699
VpaK11BI GGWCC 3 cut(s) 368, 772, 791
VspI ATTAAT 1 cut(s) 1155
XapI RAATTY 3 cut(s) 385, 610, 1432
XbaI TCTAGA 1 cut(s) 1132
XceI RCATGY 2 cut(s) 139, 1118
XcmI CCANNNNNNNNNTGG 1 cut(s) 1221
XmnI GAANNNNTTC 1 cut(s) 1506
XspI CTAG 4 cut(s) 132, 764, 1133, 1481
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.