Rroxscaffold_3G00237710

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000106
Physical Location & Seq
Reverse (-)
25422547 .. 25424270
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237710.1

Sequence Viewer

Length: 1443 bp
ATGGCAGGTGGCGAAGATCAGAAGATCATTGAGCATGGTAAGTCTTCGACCTCGCCGAAAAATCCAGAACCATGGGAGAACTCAAACCATCCATTATTTCTCCACCATTCGGATCAGCCTGGCGCGGTACTCGTGTCACAACCGCTGGTGGAAGACAACTACATAACTTGGACTCAATCTATGAGCATGGCTCTCACAATCAAGAACAAGAAGGGATTCGTTGATGGGTCCATCAAGAGGCCAACTGATAGGGTTGAAGAACAACAACAATGGGATAGGTGCAACATGCTGGTGAAGACGTGGCTGCTGGGATCCATGTCAAAGGAAATTTCTGGCAGTGTCATCCATTGCAAGGATGCAAGAAGCATGTGGCTTGAATTGCAGGAAAGGTTCTCGCATACAAACACCGTGCAACTTTTCCATATAGAAAACGCCATTCATGATTGTGAACAAGGCGGTACCTCAGTGACATCTTTCTTCACCAAACTCAAGACTCTCTGGGATGAGAAAGATGCCTTATGTGAAATTCCTCCATGCAGTTGTGAAGCAGCCAAGGAAATCAAGGATTACTTGGAAACACAAAAGACAATGAAATTTTTGATGGGTCTCAATGACAATTATGCCACGATTCGAAGCAATATTGTTGGGATGGATCCTCTTCCGAATGTGAACAAGGCTTACTCCATGGCACTTCGACATGAAAAGCAAGCAGAGGTGTCAAGTGGCAAGATGTCTACTCAGCCGGAGGCGGCTGCCTTTGCTGTGAAGAGAACCAACCGTGAGTTTGATCTTGGAGAAAGTGAGACCAAATGTGAAAAATGCAACAAAAATAATCACAGCACAAAGAATTGCAGGGCACACCTCAAGTGTACATTCTGCAATTGGAAAGGGCACACTTACGAGTACTGCCGCAAGAGGAAGGCTGCCATGGAGGGAGGACAAGTGCGTGTGAAAGGAAATCATGTGCTCTCCATACATGATAAACAAGAAGTTGGACCCAGTTTTCCATTTTCACAAGAAGAGTGTCAACAACTTATGAACCTCTTAAACAAAAACAAACCTGCCACAGCAAATCAAGTTGGTAATGTTCCAAACTTTGATGAAATCTCAGGTAAAGCATTCACTCTCTCTCGAGATGGGAAAGAAACAATATGGATATTGGATAGTGGAGCTAGTGATCACATAGTTTGTAAACCATCTCTTCTCTCCTCATCCAAATCCGTTAATAATCGTTGGGTTAAGATACCGGATGGTACTTATGCTCAGGTCACTCATATGGGAAAAGTAGTGTTCTCTCCACATTTTGTTCTCCATAATGTTTTATGTGTCCCATTCTTTTATTTGAATCTCATCTCAATTAGCAAATTGGCCTTTGATTCTTTTTATATTACCATCTTTCTCAAACAAGTTTGTGTCATACAGACCTACGATCGGGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

480

Amino Acids

54.31

Weight (kDa)

8.36

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 35 - 81 3.2e-18 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 61 - 168 2.7e-06 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 385 - 457 1.9e-12 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1069
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 734
AccII CGCG 1 cut(s) 125
AciI CCGC 5 cut(s) 125, 143, 456, 749, 910
AclWI GGATC 5 cut(s) 120, 306, 319, 647, 660
AcsI RAATTY 3 cut(s) 327, 525, 593
AfaI GTAC 5 cut(s) 129, 460, 871, 905, 1255
AfiI CCNNNNNNNGG 4 cut(s) 109, 237, 352, 1431
AgsI TTSAA 3 cut(s) 257, 377, 1345
AjiI CACGTC 1 cut(s) 300
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 1172
AluI AGCT 1 cut(s) 1172
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 2 cut(s) 611, 797
AlwI GGATC 5 cut(s) 120, 306, 319, 647, 660
Ama87I CYCGRG 1 cut(s) 1131
AoxI GGCC 2 cut(s) 239, 1368
ApeKI GCWGC 4 cut(s) 304, 548, 752, 923
ApoI RAATTY 3 cut(s) 327, 525, 593
Asp700I GAANNNNTTC 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 228, 995
AsuHPI GGTGA 2 cut(s) 304, 472
AsuII TTCGAA 1 cut(s) 631
AvaI CYCGRG 1 cut(s) 1131
AvaII GGWCC 2 cut(s) 228, 995
BaeGI GKGCMC 2 cut(s) 859, 894
BaeI ACNNNNGTAYC 4 cut(s) 119, 152, 450, 483
BamHI GGATCC 2 cut(s) 311, 652
BanI GGYRCC 1 cut(s) 458
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 3 cut(s) 36, 159, 302
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 291, 560, 739, 910
BccI CCATC 9 cut(s) 96, 218, 239, 595, 643, 1130, 1204, 1244, 1400
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 1177
BcoDI GTCTC 2 cut(s) 611, 797
BfaI CTAG 1 cut(s) 1173
BfuAI ACCTGC 1 cut(s) 1069
BisI GCNGC 6 cut(s) 305, 549, 750, 753, 910, 924
BlsI GCNGC 6 cut(s) 306, 550, 751, 754, 911, 925
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 228, 995
BmeT110I CYCGRG 1 cut(s) 1131
BmgBI CACGTC 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 228, 995
BmiI GGNNCC 5 cut(s) 229, 313, 460, 654, 997
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 2 cut(s) 346, 502
BmuI ACTGGG 1 cut(s) 993
BpiI GAAGAC 3 cut(s) 36, 159, 302
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu10I CCTNAGC 1 cut(s) 1263
Bpu14I TTCGAA 1 cut(s) 631
BpuEI CTTGAG 2 cut(s) 473, 848
BsaI GGTCTC 2 cut(s) 611, 797
BsaJI CCNNGG 4 cut(s) 71, 552, 684, 927
BsaWI WCCGGW 1 cut(s) 1246
BsaXI ACNNNNNCTCC 2 cut(s) 927, 957
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 237, 352, 1431
Bse1I ACTGG 1 cut(s) 999
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 71, 552, 684, 927
BseGI GGATG 7 cut(s) 88, 342, 361, 508, 654, 1211, 1255
BseLI CCNNNNNNNGG 4 cut(s) 109, 237, 352, 1431
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 477, 752, 1122, 1277
BseNI ACTGG 1 cut(s) 999
BseRI GAGGAG 1 cut(s) 1198
BseSI GKGCMC 2 cut(s) 859, 894
BseXI GCAGC 4 cut(s) 291, 560, 739, 910
BseYI CCCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 1432
BshFI GGCC 2 cut(s) 241, 1370
BshNI GGYRCC 1 cut(s) 458
BsiEI CGRYCG 1 cut(s) 1432
BsiHKAI GWGCWC 1 cut(s) 969
BsiHKCI CYCGRG 1 cut(s) 1131
BsiSI CCGG 2 cut(s) 743, 1247
BslFI GGGAC 1 cut(s) 1313
BslI CCNNNNNNNGG 4 cut(s) 109, 237, 352, 1431
BsmAI GTCTC 2 cut(s) 611, 797
BsmFI GGGAC 1 cut(s) 1313
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 2 cut(s) 241, 1370
Bso31I GGTCTC 2 cut(s) 611, 797
BsoBI CYCGRG 1 cut(s) 1131
Bsp119I TTCGAA 1 cut(s) 631
Bsp1286I GDGCHC 3 cut(s) 859, 894, 969
Bsp1407I TGTACA 1 cut(s) 869
Bsp143I GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
Bsp19I CCATGG 3 cut(s) 71, 684, 927
BspACI CCGC 5 cut(s) 125, 143, 456, 749, 910
BspANI GGCC 2 cut(s) 241, 1370
BspCNI CTCAG 4 cut(s) 476, 751, 1121, 1276
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 5 cut(s) 229, 313, 460, 654, 997
BspMI ACCTGC 1 cut(s) 1069
BspPI GGATC 5 cut(s) 120, 306, 319, 647, 660
BspT104I TTCGAA 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 2 cut(s) 611, 797
BsrDI GCAATG 1 cut(s) 346
BsrGI TGTACA 1 cut(s) 869
BsrI ACTGG 1 cut(s) 999
BssECI CCNNGG 4 cut(s) 71, 552, 684, 927
BssMI GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 4 cut(s) 71, 552, 684, 927
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 409, 779
Bst6I CTCTTC 4 cut(s) 663, 761, 1014, 1206
BstAUI TGTACA 1 cut(s) 869
BstBI TTCGAA 1 cut(s) 631
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 4 cut(s) 463, 738, 1108, 1263
BstDSI CCRYGG 3 cut(s) 71, 684, 927
BstF5I GGATG 7 cut(s) 88, 342, 361, 508, 654, 1211, 1255
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 8 cut(s) 19, 27, 115, 314, 655, 790, 1180, 1432
BstMAI GTCTC 2 cut(s) 611, 797
BstMBI GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
BstMCI CGRYCG 1 cut(s) 1432
BstMWI GCNNNNNNNGC 2 cut(s) 379, 758
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 289, 370
BstSCI CCNGG 1 cut(s) 118
BstSLI GKGCMC 2 cut(s) 859, 894
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 291, 560, 739, 910
BstV2I GAAGAC 3 cut(s) 36, 159, 302
BstX2I RGATCY 2 cut(s) 311, 652
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 2 cut(s) 311, 652
BsuRI GGCC 2 cut(s) 241, 1370
BtgI CCRYGG 3 cut(s) 71, 684, 927
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 7 cut(s) 88, 342, 361, 508, 654, 1211, 1255
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 343, 471
BveI ACCTGC 1 cut(s) 1069
Cac8I GCNNGC 1 cut(s) 708
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 228, 995
Csp6I GTAC 5 cut(s) 128, 459, 870, 904, 1254
CviQI GTAC 5 cut(s) 128, 459, 870, 904, 1254
DdeI CTNAG 4 cut(s) 463, 738, 1108, 1263
DpnI GATC 8 cut(s) 18, 26, 114, 313, 654, 789, 1179, 1431
DpnII GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
Eam1104I CTCTTC 4 cut(s) 663, 761, 1014, 1206
EarI CTCTTC 4 cut(s) 663, 761, 1014, 1206
Eco130I CCWWGG 4 cut(s) 71, 552, 684, 927
Eco31I GGTCTC 2 cut(s) 611, 797
Eco47I GGWCC 2 cut(s) 228, 995
Eco88I CYCGRG 1 cut(s) 1131
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 4 cut(s) 71, 552, 684, 927
ErhI CCWWGG 4 cut(s) 71, 552, 684, 927
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 1 cut(s) 1313
FauNDI CATATG 1 cut(s) 1275
FbaI TGATCA 1 cut(s) 1177
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 6 cut(s) 305, 549, 750, 753, 910, 924
FokI GGATG 7 cut(s) 75, 329, 368, 515, 661, 1198, 1262
Fsp4HI GCNGC 6 cut(s) 305, 549, 750, 753, 910, 924
FspBI CTAG 1 cut(s) 1173
GlaI GCGC 1 cut(s) 124
GluI GCNGC 6 cut(s) 305, 549, 750, 753, 910, 924
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 2 cut(s) 241, 1370
HapII CCGG 2 cut(s) 743, 1247
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 1028
HindII GTYRAC 1 cut(s) 1028
HinfI GANTC 6 cut(s) 172, 216, 493, 628, 1345, 1376
HpaII CCGG 2 cut(s) 743, 1247
HphI GGTGA 2 cut(s) 304, 472
Hpy166II GTNNAC 6 cut(s) 449, 670, 735, 870, 1028, 1193
Hpy188I TCNGA 3 cut(s) 21, 112, 663
Hpy188III TCNNGA 7 cut(s) 65, 202, 235, 440, 490, 1131, 1133
Hpy8I GTNNAC 6 cut(s) 449, 670, 735, 870, 1028, 1193
HpyAV CCTTC 2 cut(s) 205, 913
HpyCH4III ACNGT 2 cut(s) 409, 779
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 9 cut(s) 282, 351, 359, 382, 412, 537, 822, 852, 879
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 758
HpyF3I CTNAG 4 cut(s) 463, 738, 1108, 1263
HpySE526I ACGT 1 cut(s) 299
HspAI GCGC 1 cut(s) 123
KpnI GGTACC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 1177
Kzo9I GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
LmnI GCTCC 1 cut(s) 1169
Lsp1109I GCAGC 4 cut(s) 291, 560, 739, 910
LweI GCATC 2 cut(s) 346, 502
MaeI CTAG 1 cut(s) 1173
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 3 cut(s) 135, 466, 1267
MalI GATC 8 cut(s) 18, 26, 114, 313, 654, 789, 1179, 1431
MboI GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
MfeI CAATTG 1 cut(s) 880
MflI RGATCY 2 cut(s) 311, 652
MhlI GDGCHC 3 cut(s) 859, 894, 969
MluCI AATT 9 cut(s) 327, 377, 525, 593, 616, 847, 880, 1356, 1364
MlyI GAGTC 2 cut(s) 166, 487
MmeI TCCRAC 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 3 cut(s) 1046, 1224, 1239
MslI CAYNNNNRTG 3 cut(s) 290, 444, 1274
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 2 cut(s) 743, 1247
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 880
Mva1269I GAATGC 1 cut(s) 1118
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 379, 758
NcoI CCATGG 3 cut(s) 71, 684, 927
NdeI CATATG 1 cut(s) 1275
NdeII GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
NlaIV GGNNCC 5 cut(s) 229, 313, 460, 654, 997
NmuCI GTSAC 3 cut(s) 135, 466, 1267
NspI RCATGY 2 cut(s) 289, 370
NspV TTCGAA 1 cut(s) 631
PaeR7I CTCGAG 1 cut(s) 1131
PagI TCATGA 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PctI GAATGC 1 cut(s) 1118
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 4 cut(s) 216, 628, 1345, 1376
PkrI GCNGC 6 cut(s) 306, 550, 751, 754, 911, 925
Ple19I CGATCG 1 cut(s) 1432
PleI GAGTC 2 cut(s) 166, 487
PpsI GAGTC 2 cut(s) 166, 487
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 5 cut(s) 229, 313, 460, 654, 997
PspPI GGNCC 2 cut(s) 228, 995
PsrI GAACNNNNNNTAC 2 cut(s) 662, 694
PsuI RGATCY 2 cut(s) 311, 652
PvuI CGATCG 1 cut(s) 1432
RsaI GTAC 5 cut(s) 129, 460, 871, 905, 1255
RsaNI GTAC 5 cut(s) 128, 459, 870, 904, 1254
RseI CAYNNNNRTG 3 cut(s) 290, 444, 1274
SaqAI TTAA 3 cut(s) 1046, 1224, 1239
SatI GCNGC 6 cut(s) 305, 549, 750, 753, 910, 924
Sau3AI GATC 8 cut(s) 16, 24, 112, 311, 652, 787, 1177, 1429
Sau96I GGNCC 2 cut(s) 228, 995
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 2 cut(s) 166, 487
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 3 cut(s) 859, 894, 969
SfaNI GCATC 2 cut(s) 346, 502
Sfr274I CTCGAG 1 cut(s) 1131
SfuI TTCGAA 1 cut(s) 631
SinI GGWCC 2 cut(s) 228, 995
SlaI CTCGAG 1 cut(s) 1131
SmiMI CAYNNNNRTG 3 cut(s) 290, 444, 1274
SmlI CTYRAG 3 cut(s) 488, 863, 1131
SmoI CTYRAG 3 cut(s) 488, 863, 1131
Sse9I AATT 9 cut(s) 327, 377, 525, 593, 616, 847, 880, 1356, 1364
SsiI CCGC 5 cut(s) 125, 143, 456, 749, 910
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 1173
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 4 cut(s) 71, 552, 684, 927
TaaI ACNGT 2 cut(s) 409, 779
TaiI ACGT 1 cut(s) 302
TaqI TCGA 4 cut(s) 47, 631, 694, 1132
TasI AATT 9 cut(s) 327, 377, 525, 593, 616, 847, 880, 1356, 1364
TatI WGTACW 2 cut(s) 869, 903
TauI GCSGC 2 cut(s) 752, 912
TfiI GAWTC 4 cut(s) 216, 628, 1345, 1376
Tru1I TTAA 3 cut(s) 1046, 1224, 1239
Tru9I TTAA 3 cut(s) 1046, 1224, 1239
TscAI CASTG 2 cut(s) 343, 471
TseFI GTSAC 3 cut(s) 135, 466, 1267
TseI GCWGC 4 cut(s) 304, 548, 752, 923
Tsp45I GTSAC 3 cut(s) 135, 466, 1267
TspDTI ATGAA 5 cut(s) 428, 605, 714, 1052, 1116
TspGWI ACGGA 1 cut(s) 1210
TspRI CASTG 2 cut(s) 343, 471
VpaK11BI GGWCC 2 cut(s) 228, 995
XapI RAATTY 3 cut(s) 327, 525, 593
XceI RCATGY 2 cut(s) 289, 370
XhoI CTCGAG 1 cut(s) 1131
XmiI GTMKAC 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 1173
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.