NB-ARC domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_retrovirus | PF25597 | 55 - 112 | 2.4e-21 | Retroviral polymerase SH3-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 11 |
| AclWI | GGATC | 2 cut(s) | 216, 269 |
| AcsI | RAATTY | 1 cut(s) | 248 |
| AfaI | GTAC | 1 cut(s) | 64 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 357 |
| AgsI | TTSAA | 6 cut(s) | 17, 37, 89, 356, 376, 409 |
| AluBI | AGCT | 2 cut(s) | 115, 205 |
| AluI | AGCT | 2 cut(s) | 115, 205 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AlwI | GGATC | 2 cut(s) | 216, 269 |
| Ama87I | CYCGRG | 2 cut(s) | 236, 278 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| ApoI | RAATTY | 1 cut(s) | 248 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 332 |
| AvaI | CYCGRG | 2 cut(s) | 236, 278 |
| BauI | CACGAG | 1 cut(s) | 150 |
| BbsI | GAAGAC | 1 cut(s) | 163 |
| BbvI | GCAGC | 1 cut(s) | 56 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BfaI | CTAG | 1 cut(s) | 305 |
| BisI | GCNGC | 2 cut(s) | 11, 45 |
| BlsI | GCNGC | 2 cut(s) | 12, 46 |
| BmeT110I | CYCGRG | 2 cut(s) | 236, 278 |
| BmrI | ACTGGG | 2 cut(s) | 31, 68 |
| BmsI | GCATC | 1 cut(s) | 96 |
| BmuI | ACTGGG | 2 cut(s) | 31, 68 |
| BpiI | GAAGAC | 1 cut(s) | 163 |
| BsaJI | CCNNGG | 1 cut(s) | 279 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 357 |
| Bse1I | ACTGG | 2 cut(s) | 26, 74 |
| Bse3DI | GCAATG | 1 cut(s) | 138 |
| BseDI | CCNNGG | 1 cut(s) | 279 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 357 |
| BseMI | GCAATG | 1 cut(s) | 138 |
| BseNI | ACTGG | 2 cut(s) | 26, 74 |
| BseXI | GCAGC | 1 cut(s) | 56 |
| BsiHKCI | CYCGRG | 2 cut(s) | 236, 278 |
| BslFI | GGGAC | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 357 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| BsmFI | GGGAC | 1 cut(s) | 55 |
| BsoBI | CYCGRG | 2 cut(s) | 236, 278 |
| Bsp143I | GATC | 3 cut(s) | 208, 274, 389 |
| BspACI | CCGC | 1 cut(s) | 11 |
| BspPI | GGATC | 2 cut(s) | 216, 269 |
| BsrDI | GCAATG | 1 cut(s) | 138 |
| BsrI | ACTGG | 2 cut(s) | 26, 74 |
| BssECI | CCNNGG | 1 cut(s) | 279 |
| BssMI | GATC | 3 cut(s) | 208, 274, 389 |
| BssSI | CACGAG | 1 cut(s) | 150 |
| Bst2BI | CACGAG | 1 cut(s) | 150 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 69, 227 |
| BstC8I | GCNNGC | 2 cut(s) | 203, 220 |
| BstDEI | CTNAG | 1 cut(s) | 142 |
| BstKTI | GATC | 3 cut(s) | 211, 277, 392 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMBI | GATC | 3 cut(s) | 208, 274, 389 |
| BstV1I | GCAGC | 1 cut(s) | 56 |
| BstV2I | GAAGAC | 1 cut(s) | 163 |
| Cac8I | GCNNGC | 2 cut(s) | 203, 220 |
| Csp6I | GTAC | 1 cut(s) | 63 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 375, 410 |
| CviJI | RGCY | 5 cut(s) | 115, 148, 205, 261, 325 |
| CviKI_1 | RGCY | 5 cut(s) | 115, 148, 205, 261, 325 |
| CviQI | GTAC | 1 cut(s) | 63 |
| DdeI | CTNAG | 1 cut(s) | 142 |
| DpnI | GATC | 3 cut(s) | 210, 276, 391 |
| DpnII | GATC | 3 cut(s) | 208, 274, 389 |
| Eco88I | CYCGRG | 2 cut(s) | 236, 278 |
| EcoT22I | ATGCAT | 1 cut(s) | 111 |
| FaiI | YATR | 9 cut(s) | 8, 49, 111, 180, 182, 216, 243, 273, 297 |
| FaqI | GGGAC | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 2 cut(s) | 11, 45 |
| Fsp4HI | GCNGC | 2 cut(s) | 11, 45 |
| FspBI | CTAG | 1 cut(s) | 305 |
| GluI | GCNGC | 2 cut(s) | 11, 45 |
| HindIII | AAGCTT | 1 cut(s) | 113 |
| HphI | GGTGA | 2 cut(s) | 38, 332 |
| Hpy166II | GTNNAC | 2 cut(s) | 29, 65 |
| Hpy188I | TCNGA | 1 cut(s) | 255 |
| Hpy188III | TCNNGA | 3 cut(s) | 278, 305, 409 |
| Hpy8I | GTNNAC | 2 cut(s) | 29, 65 |
| HpyAV | CCTTC | 2 cut(s) | 250, 370 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 69, 227 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 109, 131 |
| HpyF3I | CTNAG | 1 cut(s) | 142 |
| Kzo9I | GATC | 3 cut(s) | 208, 274, 389 |
| LpnPI | CCDG | 3 cut(s) | 7, 87, 191 |
| Lsp1109I | GCAGC | 1 cut(s) | 56 |
| LweI | GCATC | 1 cut(s) | 96 |
| MaeI | CTAG | 1 cut(s) | 305 |
| MalI | GATC | 3 cut(s) | 210, 276, 391 |
| MboI | GATC | 3 cut(s) | 208, 274, 389 |
| MboII | GAAGA | 1 cut(s) | 163 |
| MluCI | AATT | 2 cut(s) | 248, 412 |
| MnlI | CCTC | 4 cut(s) | 159, 191, 195, 274 |
| Mph1103I | ATGCAT | 1 cut(s) | 111 |
| NdeII | GATC | 3 cut(s) | 208, 274, 389 |
| NsiI | ATGCAT | 1 cut(s) | 111 |
| PkrI | GCNGC | 2 cut(s) | 12, 46 |
| RsaI | GTAC | 1 cut(s) | 64 |
| RsaNI | GTAC | 1 cut(s) | 63 |
| SatI | GCNGC | 2 cut(s) | 11, 45 |
| Sau3AI | GATC | 3 cut(s) | 208, 274, 389 |
| SetI | ASST | 4 cut(s) | 117, 187, 207, 353 |
| SfaNI | GCATC | 1 cut(s) | 96 |
| Sse9I | AATT | 2 cut(s) | 248, 412 |
| SsiI | CCGC | 1 cut(s) | 11 |
| SspMI | CTAG | 1 cut(s) | 305 |
| TaaI | ACNGT | 3 cut(s) | 62, 69, 227 |
| TasI | AATT | 2 cut(s) | 248, 412 |
| TauI | GCSGC | 1 cut(s) | 13 |
| TseI | GCWGC | 1 cut(s) | 44 |
| TspDTI | ATGAA | 2 cut(s) | 17, 167 |
| XapI | RAATTY | 1 cut(s) | 248 |
| XbaI | TCTAGA | 1 cut(s) | 304 |
| XspI | CTAG | 1 cut(s) | 305 |
| Zsp2I | ATGCAT | 1 cut(s) | 111 |