FvH4_6g38781
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000106
Physical Location & Seq
Reverse (-)
30680778 .. 30684217
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38781.t1

Sequence Viewer

Length: 810 bp
ATGGGTCAAAAGGCCTACAAGCTATACAACATTGAGACGAAGAAAATCTTTACCAGTCGGGATGTTGTTTTTATGGAAGACACTTTTCATCATCCACCAAGCCAAATATCCTCTACCTGCCCAGAATCTACTCTACAAGCCCAGCCCATTCCGTTTCCTTGCTCAATCGAGTACAATGATCCCTTCAGTTTATCCAAGTCTCCAACGCCTCCATCCCATTCTCAGCCTGCTTTCAATGTTCCTGATATCTCACCTTCTGCTCCGCCGGAAAATTCCGACGCCAACGTCCCTCCTCACGGCGACAGTGACGTCAATGAACCGCGTCCTCTCTACCCACTCACTTCTGCATCTTCTTCTCCTGCCCCAAACACCACCGTTGTTCCTCTTCCTGTGTCTGTTCCTCCAGCGTTTGCTGGCGACCCAGACGGCGACGACGCCAATCATGGCAGCGACGTCAATCACAGCTGCGATACTCATCACGGCGGCGATGCCCATCACGGCAGCGACGCCGATCCCCTTCTTCTCCACCCACAAGCCACCGAACCCAATATTCTTCCCATTGCTCCAAATAATCCTCCATTGTTTCCTGATCAGCCTGCACCCATTCCGGATCTTCGACCTGAGACTCGATCTTCAATCATAAAGTCAAAACTGTTGCTAAAGTTCTATAATGGGCAGCGACATGTAGGGCAGCTTCCTGCCGCTGACGATGTTGAAGCTCTGGGATTAGAACTATTAGGCAGTCGTGGACTACCCGGTGATAACGACATGCGATGGTATGGGCTAAAAAGATTTCTTGAACTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

270

Amino Acids

29.0

Weight (kDa)

4.96

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 2 - 32 5.3e-09 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 284, 308
AatII GACGTC 2 cut(s) 312, 456
Acc36I ACCTGC 1 cut(s) 125
AccII CGCG 1 cut(s) 322
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 4 cut(s) 263, 320, 483, 702
AclWI GGATC 3 cut(s) 173, 506, 618
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 5 cut(s) 279, 309, 435, 453, 507
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 4 cut(s) 235, 636, 716, 800
AluBI AGCT 4 cut(s) 22, 465, 694, 719
AluI AGCT 4 cut(s) 22, 465, 694, 719
Alw26I GTCTC 3 cut(s) 29, 204, 617
AlwI GGATC 3 cut(s) 173, 506, 618
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 5 cut(s) 447, 465, 501, 676, 691
ApoI RAATTY 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 756
AsuHPI GGTGA 2 cut(s) 243, 770
BarI GAAGNNNNNNTAC 2 cut(s) 678, 710
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 5 cut(s) 452, 459, 513, 688, 703
BccI CCATC 3 cut(s) 220, 501, 768
BceAI ACGGC 4 cut(s) 313, 442, 496, 514
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 756
BcoDI GTCTC 3 cut(s) 29, 204, 617
BfaI CTAG 1 cut(s) 808
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 7 cut(s) 448, 466, 484, 502, 677, 692, 702
BlsI GCNGC 7 cut(s) 449, 467, 485, 503, 678, 693, 703
Bme1390I CCNGG 1 cut(s) 756
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 2 cut(s) 356, 478
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 756
BsaBI GATNNNNATC 2 cut(s) 474, 492
BsaHI GRCGYC 5 cut(s) 279, 309, 435, 453, 507
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 558
Bse8I GATNNNNATC 2 cut(s) 474, 492
BseAI TCCGGA 1 cut(s) 607
BseGI GGATG 3 cut(s) 67, 91, 212
BseJI GATNNNNATC 2 cut(s) 474, 492
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 2 cut(s) 236, 612
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 5 cut(s) 452, 459, 513, 688, 703
BseYI CCCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 582
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 3 cut(s) 266, 608, 756
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 3 cut(s) 29, 204, 617
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 5 cut(s) 178, 511, 589, 610, 629
BspACI CCGC 4 cut(s) 263, 320, 483, 702
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 235, 613
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 3 cut(s) 173, 506, 618
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 1 cut(s) 54
BssMI GATC 5 cut(s) 178, 511, 589, 610, 629
BssNI GRCGYC 5 cut(s) 279, 309, 435, 453, 507
Bst4CI ACNGT 3 cut(s) 305, 376, 654
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 5 cut(s) 279, 309, 435, 453, 507
BstC8I GCNNGC 3 cut(s) 228, 415, 597
BstDEI CTNAG 2 cut(s) 222, 621
BstF5I GGATG 3 cut(s) 67, 91, 212
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 5 cut(s) 181, 514, 592, 613, 632
BstMAI GTCTC 3 cut(s) 29, 204, 617
BstMBI GATC 5 cut(s) 178, 511, 589, 610, 629
BstNSI RCATGY 2 cut(s) 686, 772
BstSCI CCNGG 1 cut(s) 754
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 5 cut(s) 452, 459, 513, 688, 703
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 1 cut(s) 14
BtgZI GCGATG 2 cut(s) 501, 787
BtsCI GGATG 3 cut(s) 67, 91, 212
BtsIMutI CAGTG 1 cut(s) 310
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 3 cut(s) 228, 415, 597
CseI GACGC 4 cut(s) 287, 311, 443, 515
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 443, 683, 769
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 2 cut(s) 222, 621
DpnI GATC 5 cut(s) 180, 513, 591, 612, 631
DpnII GATC 5 cut(s) 178, 511, 589, 610, 629
DrdI GACNNNNNNGTC 2 cut(s) 284, 308
DseDI GACNNNNNNGTC 2 cut(s) 284, 308
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
EciI GGCGGA 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 14
Eco32I GATATC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 3 cut(s) 446, 686, 772
FaiI YATR 8 cut(s) 25, 74, 444, 641, 669, 684, 770, 780
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 272
FatI CATG 3 cut(s) 442, 682, 768
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 7 cut(s) 448, 466, 484, 502, 677, 692, 702
FokI GGATG 3 cut(s) 74, 78, 199
Fsp4HI GCNGC 7 cut(s) 448, 466, 484, 502, 677, 692, 702
FspBI CTAG 1 cut(s) 808
GluI GCNGC 7 cut(s) 448, 466, 484, 502, 677, 692, 702
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 14
HapII CCGG 3 cut(s) 266, 608, 756
HgaI GACGC 4 cut(s) 287, 311, 443, 515
Hin1I GRCGYC 5 cut(s) 279, 309, 435, 453, 507
Hin1II CATG 3 cut(s) 446, 686, 772
HinfI GANTC 2 cut(s) 125, 625
HpaII CCGG 3 cut(s) 266, 608, 756
HphI GGTGA 2 cut(s) 243, 770
Hpy166II GTNNAC 1 cut(s) 749
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 5 cut(s) 59, 242, 587, 608, 797
Hpy8I GTNNAC 1 cut(s) 749
Hpy99I CGWCG 5 cut(s) 281, 434, 437, 455, 509
HpyAV CCTTC 3 cut(s) 193, 264, 527
HpyCH4III ACNGT 3 cut(s) 305, 376, 654
HpyCH4IV ACGT 3 cut(s) 285, 309, 453
HpyCH4V TGCA 2 cut(s) 347, 599
HpyF3I CTNAG 2 cut(s) 222, 621
HpySE526I ACGT 3 cut(s) 285, 309, 453
Hsp92I GRCGYC 5 cut(s) 279, 309, 435, 453, 507
Hsp92II CATG 3 cut(s) 446, 686, 772
Kpn2I TCCGGA 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 5 cut(s) 178, 511, 589, 610, 629
LmnI GCTCC 2 cut(s) 265, 568
Lsp1109I GCAGC 5 cut(s) 452, 459, 513, 688, 703
LweI GCATC 2 cut(s) 356, 478
MaeI CTAG 1 cut(s) 808
MaeII ACGT 3 cut(s) 285, 309, 453
MaeIII GTNAC 1 cut(s) 305
MalI GATC 5 cut(s) 180, 513, 591, 612, 631
MboI GATC 5 cut(s) 178, 511, 589, 610, 629
MboII GAAGA 9 cut(s) 52, 89, 342, 345, 377, 512, 545, 605, 624
MflI RGATCY 1 cut(s) 610
MluCI AATT 1 cut(s) 271
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 2 cut(s) 227, 300
MnlI CCTC 8 cut(s) 121, 219, 300, 303, 336, 393, 411, 585
MroI TCCGGA 1 cut(s) 607
MspA1I CMGCKG 2 cut(s) 465, 704
MspI CCGG 3 cut(s) 266, 608, 756
MspR9I CCNGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 322
NciI CCSGG 1 cut(s) 756
NdeII GATC 5 cut(s) 178, 511, 589, 610, 629
NlaIII CATG 3 cut(s) 446, 686, 772
NmeAIII GCCGAG 1 cut(s) 783
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 2 cut(s) 686, 772
PceI AGGCCT 1 cut(s) 14
PciI ACATGT 1 cut(s) 682
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 7 cut(s) 449, 467, 485, 503, 678, 693, 703
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PscI ACATGT 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 465
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SatI GCNGC 7 cut(s) 448, 466, 484, 502, 677, 692, 702
Sau3AI GATC 5 cut(s) 178, 511, 589, 610, 629
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 1 cut(s) 756
SfaNI GCATC 2 cut(s) 356, 478
Sse9I AATT 1 cut(s) 271
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 4 cut(s) 263, 320, 483, 702
SspI AATATT 1 cut(s) 550
SspMI CTAG 1 cut(s) 808
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 754
TaaI ACNGT 3 cut(s) 305, 376, 654
TaiI ACGT 3 cut(s) 288, 312, 456
TaqI TCGA 3 cut(s) 168, 616, 628
TasI AATT 1 cut(s) 271
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 486, 704
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 5 cut(s) 447, 465, 501, 676, 691
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 77, 330
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 310
XapI RAATTY 1 cut(s) 271
XceI RCATGY 2 cut(s) 686, 772
XspI CTAG 1 cut(s) 808
ZraI GACGTC 2 cut(s) 310, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.