DNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 374 |
| AclWI | GGATC | 1 cut(s) | 260 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AfaI | GTAC | 1 cut(s) | 430 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 379, 425 |
| AgsI | TTSAA | 1 cut(s) | 303 |
| AjiI | CACGTC | 1 cut(s) | 326 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 115, 147 |
| AluBI | AGCT | 3 cut(s) | 151, 239, 357 |
| AluI | AGCT | 3 cut(s) | 151, 239, 357 |
| Alw21I | GWGCWC | 2 cut(s) | 143, 425 |
| AlwI | GGATC | 1 cut(s) | 260 |
| ApeKI | GCWGC | 2 cut(s) | 212, 383 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspA2I | CCTAGG | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 3 cut(s) | 19, 253, 461 |
| AsuII | TTCGAA | 1 cut(s) | 234 |
| AvrII | CCTAGG | 1 cut(s) | 68 |
| Bbv12I | GWGCWC | 2 cut(s) | 143, 425 |
| BbvI | GCAGC | 2 cut(s) | 199, 395 |
| BccI | CCATC | 3 cut(s) | 163, 418, 532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 343, 377 |
| BfaI | CTAG | 3 cut(s) | 18, 42, 69 |
| BisI | GCNGC | 2 cut(s) | 213, 384 |
| BlnI | CCTAGG | 1 cut(s) | 68 |
| BlsI | GCNGC | 2 cut(s) | 214, 385 |
| BmgBI | CACGTC | 1 cut(s) | 326 |
| BmiI | GGNNCC | 1 cut(s) | 522 |
| Bpu14I | TTCGAA | 1 cut(s) | 234 |
| BsaJI | CCNNGG | 1 cut(s) | 68 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 334, 364 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 379, 425 |
| Bse1I | ACTGG | 1 cut(s) | 30 |
| BseDI | CCNNGG | 1 cut(s) | 68 |
| BseGI | GGATG | 1 cut(s) | 155 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 379, 425 |
| BseMII | CTCAG | 2 cut(s) | 69, 410 |
| BseNI | ACTGG | 1 cut(s) | 30 |
| BseRI | GAGGAG | 2 cut(s) | 117, 309 |
| BseXI | GCAGC | 2 cut(s) | 199, 395 |
| BsiHKAI | GWGCWC | 2 cut(s) | 143, 425 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 379, 425 |
| Bsp119I | TTCGAA | 1 cut(s) | 234 |
| Bsp1286I | GDGCHC | 2 cut(s) | 143, 425 |
| Bsp143I | GATC | 1 cut(s) | 265 |
| BspCNI | CTCAG | 2 cut(s) | 70, 409 |
| BspLI | GGNNCC | 1 cut(s) | 522 |
| BspPI | GGATC | 1 cut(s) | 260 |
| BspQI | GCTCTTC | 1 cut(s) | 408 |
| BspT104I | TTCGAA | 1 cut(s) | 234 |
| BsrI | ACTGG | 1 cut(s) | 30 |
| BssECI | CCNNGG | 1 cut(s) | 68 |
| BssMI | GATC | 1 cut(s) | 265 |
| BssT1I | CCWWGG | 1 cut(s) | 68 |
| Bst4CI | ACNGT | 2 cut(s) | 205, 499 |
| Bst6I | CTCTTC | 1 cut(s) | 408 |
| BstBI | TTCGAA | 1 cut(s) | 234 |
| BstDEI | CTNAG | 2 cut(s) | 78, 396 |
| BstF5I | GGATG | 1 cut(s) | 155 |
| BstKTI | GATC | 1 cut(s) | 268 |
| BstMBI | GATC | 1 cut(s) | 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 488 |
| BstV1I | GCAGC | 2 cut(s) | 199, 395 |
| BtrI | CACGTC | 1 cut(s) | 326 |
| BtsCI | GGATG | 1 cut(s) | 155 |
| BtsIMutI | CAGTG | 1 cut(s) | 141 |
| Csp6I | GTAC | 1 cut(s) | 429 |
| CviAII | CATG | 3 cut(s) | 209, 365, 374 |
| CviJI | RGCY | 7 cut(s) | 151, 239, 255, 357, 401, 491, 523 |
| CviKI_1 | RGCY | 7 cut(s) | 151, 239, 255, 357, 401, 491, 523 |
| CviQI | GTAC | 1 cut(s) | 429 |
| DdeI | CTNAG | 2 cut(s) | 78, 396 |
| DpnI | GATC | 1 cut(s) | 267 |
| DpnII | GATC | 1 cut(s) | 265 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 374 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 374 |
| Eam1104I | CTCTTC | 1 cut(s) | 408 |
| EarI | CTCTTC | 1 cut(s) | 408 |
| Eco130I | CCWWGG | 1 cut(s) | 68 |
| EcoRI | GAATTC | 1 cut(s) | 73 |
| EcoT14I | CCWWGG | 1 cut(s) | 68 |
| ErhI | CCWWGG | 1 cut(s) | 68 |
| FaeI | CATG | 3 cut(s) | 212, 368, 377 |
| FatI | CATG | 3 cut(s) | 208, 364, 373 |
| Fnu4HI | GCNGC | 2 cut(s) | 213, 384 |
| FokI | GGATG | 1 cut(s) | 142 |
| Fsp4HI | GCNGC | 2 cut(s) | 213, 384 |
| FspBI | CTAG | 3 cut(s) | 18, 42, 69 |
| GluI | GCNGC | 2 cut(s) | 213, 384 |
| Hin1II | CATG | 3 cut(s) | 212, 368, 377 |
| HincII | GTYRAC | 1 cut(s) | 47 |
| HindII | GTYRAC | 1 cut(s) | 47 |
| HinfI | GANTC | 5 cut(s) | 4, 92, 194, 296, 349 |
| HphI | GGTGA | 3 cut(s) | 19, 253, 461 |
| Hpy166II | GTNNAC | 2 cut(s) | 47, 291 |
| Hpy188I | TCNGA | 6 cut(s) | 36, 79, 181, 199, 354, 420 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| Hpy8I | GTNNAC | 2 cut(s) | 47, 291 |
| HpyAV | CCTTC | 2 cut(s) | 183, 402 |
| HpyCH4III | ACNGT | 2 cut(s) | 205, 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 325 |
| HpyCH4V | TGCA | 2 cut(s) | 115, 364 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 488 |
| HpyF3I | CTNAG | 2 cut(s) | 78, 396 |
| HpySE526I | ACGT | 1 cut(s) | 325 |
| Hsp92II | CATG | 3 cut(s) | 212, 368, 377 |
| Kzo9I | GATC | 1 cut(s) | 265 |
| LguI | GCTCTTC | 1 cut(s) | 408 |
| LmnI | GCTCC | 2 cut(s) | 516, 520 |
| LpnPI | CCDG | 7 cut(s) | 43, 177, 234, 374, 383, 411, 492 |
| Lsp1109I | GCAGC | 2 cut(s) | 199, 395 |
| MaeI | CTAG | 3 cut(s) | 18, 42, 69 |
| MaeII | ACGT | 1 cut(s) | 325 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 1 cut(s) | 267 |
| MboI | GATC | 1 cut(s) | 265 |
| MboII | GAAGA | 4 cut(s) | 126, 272, 291, 395 |
| MhlI | GDGCHC | 2 cut(s) | 143, 425 |
| MluCI | AATT | 1 cut(s) | 73 |
| MlyI | GAGTC | 3 cut(s) | 86, 203, 343 |
| MmeI | TCCRAC | 1 cut(s) | 146 |
| MnlI | CCTC | 9 cut(s) | 18, 69, 138, 169, 295, 330, 373, 417, 444 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 1 cut(s) | 501 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 488 |
| NdeII | GATC | 1 cut(s) | 265 |
| NlaIII | CATG | 3 cut(s) | 212, 368, 377 |
| NlaIV | GGNNCC | 1 cut(s) | 522 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| NspV | TTCGAA | 1 cut(s) | 234 |
| PciSI | GCTCTTC | 1 cut(s) | 408 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 4, 296 |
| PkrI | GCNGC | 2 cut(s) | 214, 385 |
| PleI | GAGTC | 3 cut(s) | 86, 202, 343 |
| PpsI | GAGTC | 3 cut(s) | 86, 202, 343 |
| PspN4I | GGNNCC | 1 cut(s) | 522 |
| RsaI | GTAC | 1 cut(s) | 430 |
| RsaNI | GTAC | 1 cut(s) | 429 |
| SapI | GCTCTTC | 1 cut(s) | 408 |
| SaqAI | TTAA | 1 cut(s) | 501 |
| SatI | GCNGC | 2 cut(s) | 213, 384 |
| Sau3AI | GATC | 1 cut(s) | 265 |
| SchI | GAGTC | 3 cut(s) | 86, 203, 343 |
| SduI | GDGCHC | 2 cut(s) | 143, 425 |
| SetI | ASST | 8 cut(s) | 70, 153, 241, 274, 328, 359, 430, 474 |
| SfuI | TTCGAA | 1 cut(s) | 234 |
| Sse9I | AATT | 1 cut(s) | 73 |
| SspMI | CTAG | 3 cut(s) | 18, 42, 69 |
| StyI | CCWWGG | 1 cut(s) | 68 |
| TaaI | ACNGT | 2 cut(s) | 205, 499 |
| TaiI | ACGT | 1 cut(s) | 328 |
| TaqI | TCGA | 4 cut(s) | 137, 234, 243, 378 |
| TasI | AATT | 1 cut(s) | 73 |
| TfiI | GAWTC | 2 cut(s) | 4, 296 |
| Tru1I | TTAA | 1 cut(s) | 501 |
| Tru9I | TTAA | 1 cut(s) | 501 |
| TscAI | CASTG | 1 cut(s) | 148 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 2 cut(s) | 212, 383 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 2 cut(s) | 17, 165 |
| TspRI | CASTG | 1 cut(s) | 148 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XmaJI | CCTAGG | 1 cut(s) | 68 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 3 cut(s) | 18, 42, 69 |