FvH4_3g04761

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000106
Physical Location & Seq
Reverse (-)
2727677 .. 2729199
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04761.t1

Sequence Viewer

Length: 1224 bp
ATGTCCGGTGACGGTATCATTCCACCACTTCCCAAATCTGATGACGCTGATCCAGAGCCTTCATTAGAAATTCCAAAGACCTCATCAGAAGTTCTTAATGATTCTTTCAAGGCAGAGCCTTCAAATCCCTATTTCATTCACCATTCGGATCATCCCGGATTGGTTCTTGTCTCCAAACTCCTAAATGGGGATAACTATTCTGGTTGGAAAAGGGCTATGGTTAGAGCTCTAAATTCCAAGAACAAGCTTGGATTTGTCAATGGTTCCGTCAAAGCTCCCTCAGAAGAAACTGATCCTGAAGGCTATGCGACTTGGTCGCGATGCAATGATATGGTCCATTCTTGGATCGTCAATTCTTGCGATCCAGAGATAGCTGACAGCGTGACATATTATCCCACTGCTCACGAGGTTTGGGAGGACCTCCATGAACGCTTTTCTCAAGCAAATGCGACACGCATCTTTGAGATTCAGAGAGATATCAACTATCTTCGACAAGAACAACTCTCTATCTCAGTCTATTACACGAAGTTGAAGGCCCTATGGGATGAGTTAGCAACACTTGATGCGACACAAGCAGCACAATCGGATCAACAAAGATTGATGCATTTTCTAATGGGGTTAAATGAAACTTACCAGGCTATCCGTGGCCAAATCCTTCTCATGAAGCCTCTACCCACTGTTCGTCAAGCTTTCTCTTCAGTTCTTCAGGAAGAAAAGCAGCGCCTGATTGCCTCAAGCCGCACGACAGAGGATTCTGGCAACGTTGCCGCCATGGCTGTGCGACCTGGAAATAATGGGCCGGCGGTGGAAGCTAGAAGTGGCGGAACCAATCGGCTCTCAGAGGGGCGATCAAATCAGGACCAGCGTGGCGGCGGTGGAGGAGGTCAGCGCGCCTGGAATGGAGGAAGGCGAGTTGATCAGAACCAGCGACGCTTTGGTTCAGAAAGAAGGAGACCACATTGCACGTATTGTAACGATATGGGTCATTGGGTCCAAACTTGTCATAAGTTACATGGATATCCTGAAGGTCACCCAAGAGCAAGAAACAATCACAAAGCTGCTGCTAATTATGCATCGGAGGAAAGATTGGTTTCGATACCAGAGGATCAGTTCAAGCAGTTGCTATCACTTATTCCCAAGACTCAAGATGAGGAGTCTGGTTCCAAGGCTAATGCGGTAACAAAACCAGGATCTGGCTACAAGGAGGACGATTGGTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3

Protein Analysis

408

Amino Acids

45.48

Weight (kDa)

6.25

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 47 - 93 4.8e-23 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 77 - 241 9.4e-13 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1193
AccII CGCG 2 cut(s) 319, 891
AciI CCGC 7 cut(s) 739, 768, 803, 822, 870, 873, 1175
AclI AACGTT 1 cut(s) 762
AclWI GGATC 8 cut(s) 44, 156, 287, 353, 356, 594, 1113, 1198
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 2 cut(s) 69, 232
AcuI CTGAAG 4 cut(s) 318, 681, 689, 1044
AfiI CCNNNNNNNGG 2 cut(s) 187, 1193
AgsI TTSAA 4 cut(s) 109, 123, 532, 1114
AjnI CCWGG 4 cut(s) 633, 784, 893, 1186
AluBI AGCT 7 cut(s) 227, 247, 275, 374, 689, 812, 1058
AluI AGCT 7 cut(s) 227, 247, 275, 374, 689, 812, 1058
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 2 cut(s) 175, 946
AlwI GGATC 8 cut(s) 44, 156, 287, 353, 356, 594, 1113, 1198
AlwNI CAGNNNCTG 2 cut(s) 724, 1193
AoxI GGCC 3 cut(s) 534, 646, 797
ApeKI GCWGC 4 cut(s) 575, 718, 1058, 1061
ApoI RAATTY 2 cut(s) 69, 232
ArsI GACNNNNNNTTYG 1 cut(s) 1199
AspLEI GCGC 3 cut(s) 723, 891, 893
AspS9I GGNCC 6 cut(s) 334, 418, 535, 797, 859, 991
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 20, 131, 1022
AvaII GGWCC 4 cut(s) 334, 418, 859, 991
BalI TGGCCA 1 cut(s) 648
BanII GRGCYC 1 cut(s) 229
BauI CACGAG 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 4 cut(s) 587, 730, 1045, 1048
BcgI CGANNNNNNTGC 2 cut(s) 564, 598
BciT130I CCWGG 4 cut(s) 635, 786, 895, 1188
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 175, 946
BfaI CTAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 724
BglI GCCNNNNNGGC 1 cut(s) 773
BisI GCNGC 7 cut(s) 576, 719, 739, 768, 871, 1059, 1062
BlsI GCNGC 7 cut(s) 577, 720, 740, 769, 872, 1060, 1063
Bme1390I CCNGG 5 cut(s) 156, 635, 786, 895, 1188
Bme18I GGWCC 4 cut(s) 334, 418, 859, 991
BmgT120I GGNCC 6 cut(s) 334, 418, 535, 797, 859, 991
BmiI GGNNCC 4 cut(s) 265, 826, 992, 1162
BmrFI CCNGG 5 cut(s) 156, 635, 786, 895, 1188
BmsI GCATC 5 cut(s) 311, 465, 553, 591, 1082
BpuEI CTTGAG 3 cut(s) 423, 718, 1128
BpuMI CCSGG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 966
BsaI GGTCTC 1 cut(s) 946
BsaJI CCNNGG 3 cut(s) 643, 771, 1164
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 1193
Bse118I RCCGGY 1 cut(s) 799
Bse3DI GCAATG 2 cut(s) 331, 958
BseBI CCWGG 4 cut(s) 635, 786, 895, 1188
BseDI CCNNGG 3 cut(s) 643, 771, 1164
BseGI GGATG 2 cut(s) 151, 550
BseLI CCNNNNNNNGG 2 cut(s) 187, 1193
BseMI GCAATG 2 cut(s) 331, 958
BseMII CTCAG 3 cut(s) 294, 525, 852
BsePI GCGCGC 1 cut(s) 889
BseRI GAGGAG 2 cut(s) 894, 1166
BseXI GCAGC 4 cut(s) 587, 730, 1045, 1048
Bsh1236I CGCG 2 cut(s) 319, 891
BshFI GGCC 3 cut(s) 536, 648, 799
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 3 cut(s) 6, 156, 800
BslI CCNNNNNNNGG 2 cut(s) 187, 1193
BsmAI GTCTC 2 cut(s) 175, 946
BsnI GGCC 3 cut(s) 536, 648, 799
Bso31I GGTCTC 1 cut(s) 946
Bsp1286I GDGCHC 1 cut(s) 229
Bsp19I CCATGG 1 cut(s) 771
Bsp68I TCGCGA 1 cut(s) 319
BspACI CCGC 7 cut(s) 739, 768, 803, 822, 870, 873, 1175
BspANI GGCC 3 cut(s) 536, 648, 799
BspCNI CTCAG 3 cut(s) 293, 524, 851
BspFNI CGCG 2 cut(s) 319, 891
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 4 cut(s) 265, 826, 992, 1162
BspPI GGATC 8 cut(s) 44, 156, 287, 353, 356, 594, 1113, 1198
BspTNI GGTCTC 1 cut(s) 946
BsrDI GCAATG 2 cut(s) 331, 958
BsrFI RCCGGY 1 cut(s) 799
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 3 cut(s) 643, 771, 1164
BssHII GCGCGC 1 cut(s) 889
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 2 cut(s) 771, 1164
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 4 cut(s) 635, 786, 895, 1188
Bst4CI ACNGT 2 cut(s) 14, 679
Bst6I CTCTTC 1 cut(s) 700
BstBAI YACGTR 1 cut(s) 966
BstC8I GCNNGC 2 cut(s) 801, 891
BstDEI CTNAG 3 cut(s) 280, 511, 838
BstDSI CCRYGG 2 cut(s) 643, 771
BstEII GGTNACC 1 cut(s) 1028
BstF5I GGATG 2 cut(s) 151, 550
BstFNI CGCG 2 cut(s) 319, 891
BstH2I RGCGCY 1 cut(s) 724
BstHHI GCGC 3 cut(s) 723, 891, 893
BstMAI GTCTC 2 cut(s) 175, 946
BstMWI GCNNNNNNNGC 4 cut(s) 572, 773, 809, 1070
BstNI CCWGG 4 cut(s) 635, 786, 895, 1188
BstPI GGTNACC 1 cut(s) 1028
BstSCI CCNGG 5 cut(s) 154, 633, 784, 893, 1186
BstUI CGCG 2 cut(s) 319, 891
BstV1I GCAGC 4 cut(s) 587, 730, 1045, 1048
BstX2I RGATCY 1 cut(s) 1190
BstYI RGATCY 1 cut(s) 1190
BsuRI GGCC 3 cut(s) 536, 648, 799
BtgI CCRYGG 2 cut(s) 643, 771
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 151, 550
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 396, 675
BtuMI TCGCGA 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 801, 891
CaiI CAGNNNCTG 2 cut(s) 724, 1193
CciI TCATGA 1 cut(s) 660
CfoI GCGC 3 cut(s) 723, 891, 893
Cfr10I RCCGGY 1 cut(s) 799
Cfr13I GGNCC 6 cut(s) 334, 418, 535, 797, 859, 991
CseI GACGC 2 cut(s) 53, 939
CviAII CATG 4 cut(s) 425, 661, 772, 1013
DdeI CTNAG 3 cut(s) 280, 511, 838
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 1 cut(s) 700
EarI CTCTTC 1 cut(s) 700
EciI GGCGGA 1 cut(s) 837
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 771, 1164
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 946
Eco32I GATATC 2 cut(s) 478, 1019
Eco47I GGWCC 4 cut(s) 334, 418, 859, 991
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 4 cut(s) 318, 681, 689, 1044
Eco91I GGTNACC 1 cut(s) 1028
EcoICRI GAGCTC 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 418, 535
EcoO65I GGTNACC 1 cut(s) 1028
EcoRII CCWGG 4 cut(s) 633, 784, 893, 1186
EcoRV GATATC 2 cut(s) 478, 1019
EcoT14I CCWWGG 2 cut(s) 771, 1164
EcoT22I ATGCAT 2 cut(s) 606, 1075
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 771, 1164
FaeI CATG 4 cut(s) 428, 664, 775, 1016
FatI CATG 4 cut(s) 424, 660, 771, 1012
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 7 cut(s) 576, 719, 739, 768, 871, 1059, 1062
FokI GGATG 2 cut(s) 138, 557
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 7 cut(s) 576, 719, 739, 768, 871, 1059, 1062
FspBI CTAG 1 cut(s) 813
GlaI GCGC 3 cut(s) 722, 890, 892
GluI GCNGC 7 cut(s) 576, 719, 739, 768, 871, 1059, 1062
HaeII RGCGCY 1 cut(s) 724
HaeIII GGCC 3 cut(s) 536, 648, 799
HapII CCGG 3 cut(s) 6, 156, 800
HgaI GACGC 2 cut(s) 53, 939
HhaI GCGC 3 cut(s) 723, 891, 893
Hin1II CATG 4 cut(s) 428, 664, 775, 1016
Hin6I GCGC 3 cut(s) 721, 889, 891
HinP1I GCGC 3 cut(s) 721, 889, 891
HindIII AAGCTT 2 cut(s) 245, 687
HinfI GANTC 5 cut(s) 101, 466, 752, 1141, 1154
HpaII CCGG 3 cut(s) 6, 156, 800
HphI GGTGA 3 cut(s) 20, 131, 1022
Hpy99I CGWCG 1 cut(s) 933
HpyAV CCTTC 8 cut(s) 69, 129, 293, 526, 665, 900, 942, 1019
HpyCH4III ACNGT 2 cut(s) 14, 679
HpyCH4IV ACGT 2 cut(s) 762, 965
HpyCH4V TGCA 4 cut(s) 324, 604, 963, 1073
HpyF10VI GCNNNNNNNGC 4 cut(s) 572, 773, 809, 1070
HpyF3I CTNAG 3 cut(s) 280, 511, 838
HpySE526I ACGT 2 cut(s) 762, 965
Hsp92II CATG 4 cut(s) 428, 664, 775, 1016
HspAI GCGC 3 cut(s) 721, 889, 891
KroI GCCGGC 1 cut(s) 799
KroNI GCCGGC 1 cut(s) 801
Ksp22I TGATCA 1 cut(s) 916
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 4 cut(s) 587, 730, 1045, 1048
LweI GCATC 5 cut(s) 311, 465, 553, 591, 1082
MaeI CTAG 1 cut(s) 813
MaeII ACGT 2 cut(s) 762, 965
MaeIII GTNAC 6 cut(s) 8, 382, 971, 1008, 1028, 1177
MboII GAAGA 5 cut(s) 296, 479, 687, 695, 722
MflI RGATCY 1 cut(s) 1190
MhlI GDGCHC 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 4 cut(s) 69, 232, 352, 1066
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 2 cut(s) 1135, 1163
MmeI TCCRAC 1 cut(s) 185
Mox20I TGGCCA 1 cut(s) 648
Mph1103I ATGCAT 2 cut(s) 606, 1075
MroNI GCCGGC 1 cut(s) 799
MscI TGGCCA 1 cut(s) 648
MseI TTAA 2 cut(s) 96, 620
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 648
MspI CCGG 3 cut(s) 6, 156, 800
MspR9I CCNGG 5 cut(s) 156, 635, 786, 895, 1188
MvaI CCWGG 4 cut(s) 635, 786, 895, 1188
MvnI CGCG 2 cut(s) 319, 891
MwoI GCNNNNNNNGC 4 cut(s) 572, 773, 809, 1070
NaeI GCCGGC 1 cut(s) 801
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 771
NgoMIV GCCGGC 1 cut(s) 799
NlaIII CATG 4 cut(s) 428, 664, 775, 1016
NlaIV GGNNCC 4 cut(s) 265, 826, 992, 1162
NmuCI GTSAC 3 cut(s) 8, 382, 1028
NruI TCGCGA 1 cut(s) 319
NsiI ATGCAT 2 cut(s) 606, 1075
PagI TCATGA 1 cut(s) 660
PauI GCGCGC 1 cut(s) 889
PdiI GCCGGC 1 cut(s) 801
PfeI GAWTC 3 cut(s) 101, 466, 752
PflFI GACNNNGTC 1 cut(s) 313
PflMI CCANNNNNTGG 1 cut(s) 1193
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 7 cut(s) 577, 720, 740, 769, 872, 1060, 1063
PleI GAGTC 2 cut(s) 1135, 1162
PpsI GAGTC 2 cut(s) 1135, 1162
Ppu21I YACGTR 1 cut(s) 966
PpuMI RGGWCCY 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 229
Psp1406I AACGTT 1 cut(s) 762
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 4 cut(s) 633, 784, 893, 1186
PspEI GGTNACC 1 cut(s) 1028
PspGI CCWGG 4 cut(s) 633, 784, 893, 1186
PspN4I GGNNCC 4 cut(s) 265, 826, 992, 1162
PspPI GGNCC 6 cut(s) 334, 418, 535, 797, 859, 991
PspPPI RGGWCCY 1 cut(s) 418
PstNI CAGNNNCTG 2 cut(s) 724, 1193
PsuI RGATCY 1 cut(s) 1190
PsyI GACNNNGTC 1 cut(s) 313
PteI GCGCGC 1 cut(s) 889
RruI TCGCGA 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 96, 620
SatI GCNGC 7 cut(s) 576, 719, 739, 768, 871, 1059, 1062
Sau96I GGNCC 6 cut(s) 334, 418, 535, 797, 859, 991
SchI GAGTC 2 cut(s) 1135, 1163
ScrFI CCNGG 5 cut(s) 156, 635, 786, 895, 1188
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 5 cut(s) 311, 465, 553, 591, 1082
SinI GGWCC 4 cut(s) 334, 418, 859, 991
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 3 cut(s) 438, 733, 1143
SmoI CTYRAG 3 cut(s) 438, 733, 1143
Sse9I AATT 4 cut(s) 69, 232, 352, 1066
SsiI CCGC 7 cut(s) 739, 768, 803, 822, 870, 873, 1175
SspMI CTAG 1 cut(s) 813
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 5 cut(s) 154, 633, 784, 893, 1186
StyI CCWWGG 2 cut(s) 771, 1164
TaaI ACNGT 2 cut(s) 14, 679
TaiI ACGT 2 cut(s) 765, 968
TaqI TCGA 2 cut(s) 490, 1094
TasI AATT 4 cut(s) 69, 232, 352, 1066
TauI GCSGC 3 cut(s) 741, 770, 873
TfiI GAWTC 3 cut(s) 101, 466, 752
Tru1I TTAA 2 cut(s) 96, 620
Tru9I TTAA 2 cut(s) 96, 620
TscAI CASTG 2 cut(s) 403, 682
TseFI GTSAC 3 cut(s) 8, 382, 1028
TseI GCWGC 4 cut(s) 575, 718, 1058, 1061
Tsp45I GTSAC 3 cut(s) 8, 382, 1028
TspDTI ATGAA 5 cut(s) 51, 124, 441, 639, 677
TspGWI ACGGA 2 cut(s) 256, 632
TspRI CASTG 2 cut(s) 403, 682
Tth111I GACNNNGTC 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 1193
VpaK11BI GGWCC 4 cut(s) 334, 418, 859, 991
XapI RAATTY 2 cut(s) 69, 232
XcmI CCANNNNNNNNNTGG 2 cut(s) 641, 932
XspI CTAG 1 cut(s) 813
Zsp2I ATGCAT 2 cut(s) 606, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.