gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 27 - 186 | 5.9e-32 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 486 |
| AcuI | CTGAAG | 1 cut(s) | 324 |
| AfaI | GTAC | 4 cut(s) | 90, 113, 148, 319 |
| AgsI | TTSAA | 5 cut(s) | 122, 279, 368, 464, 556 |
| AluBI | AGCT | 9 cut(s) | 9, 15, 35, 181, 212, 302, 335, 395, 498 |
| AluI | AGCT | 9 cut(s) | 9, 15, 35, 181, 212, 302, 335, 395, 498 |
| Alw21I | GWGCWC | 1 cut(s) | 37 |
| Alw26I | GTCTC | 1 cut(s) | 45 |
| ApoI | RAATTY | 1 cut(s) | 486 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 257, 289 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 401 |
| BanII | GRGCYC | 1 cut(s) | 37 |
| BbsI | GAAGAC | 2 cut(s) | 267, 554 |
| Bbv12I | GWGCWC | 1 cut(s) | 37 |
| BccI | CCATC | 2 cut(s) | 119, 380 |
| BceAI | ACGGC | 1 cut(s) | 503 |
| BcoDI | GTCTC | 1 cut(s) | 45 |
| BfaI | CTAG | 4 cut(s) | 140, 299, 375, 414 |
| BglII | AGATCT | 1 cut(s) | 246 |
| BmcAI | AGTACT | 1 cut(s) | 90 |
| BmsI | GCATC | 4 cut(s) | 81, 154, 193, 505 |
| BpiI | GAAGAC | 2 cut(s) | 267, 554 |
| BpmI | CTGGAG | 1 cut(s) | 88 |
| BsaAI | YACGTR | 1 cut(s) | 356 |
| BsaBI | GATNNNNATC | 1 cut(s) | 405 |
| Bse8I | GATNNNNATC | 1 cut(s) | 405 |
| BseGI | GGATG | 2 cut(s) | 208, 298 |
| BseJI | GATNNNNATC | 1 cut(s) | 405 |
| BseMII | CTCAG | 2 cut(s) | 173, 182 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BsgI | GTGCAG | 1 cut(s) | 500 |
| BsiHKAI | GWGCWC | 1 cut(s) | 37 |
| BsmAI | GTCTC | 1 cut(s) | 45 |
| Bsp1286I | GDGCHC | 1 cut(s) | 37 |
| Bsp143I | GATC | 4 cut(s) | 25, 185, 246, 535 |
| BspCNI | CTCAG | 2 cut(s) | 174, 181 |
| BssMI | GATC | 4 cut(s) | 25, 185, 246, 535 |
| Bst4CI | ACNGT | 1 cut(s) | 88 |
| BstBAI | YACGTR | 1 cut(s) | 356 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 231 |
| BstDEI | CTNAG | 3 cut(s) | 115, 168, 182 |
| BstF5I | GGATG | 2 cut(s) | 208, 298 |
| BstKTI | GATC | 4 cut(s) | 28, 188, 249, 538 |
| BstMAI | GTCTC | 1 cut(s) | 45 |
| BstMBI | GATC | 4 cut(s) | 25, 185, 246, 535 |
| BstSNI | TACGTA | 1 cut(s) | 356 |
| BstV2I | GAAGAC | 2 cut(s) | 267, 554 |
| BstX2I | RGATCY | 1 cut(s) | 246 |
| BstYI | RGATCY | 1 cut(s) | 246 |
| BtsCI | GGATG | 2 cut(s) | 208, 298 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 231 |
| Csp6I | GTAC | 4 cut(s) | 89, 112, 147, 318 |
| CviAII | CATG | 1 cut(s) | 193 |
| CviQI | GTAC | 4 cut(s) | 89, 112, 147, 318 |
| DdeI | CTNAG | 3 cut(s) | 115, 168, 182 |
| DpnI | GATC | 4 cut(s) | 27, 187, 248, 537 |
| DpnII | GATC | 4 cut(s) | 25, 185, 246, 535 |
| Ecl136II | GAGCTC | 1 cut(s) | 35 |
| Eco105I | TACGTA | 1 cut(s) | 356 |
| Eco24I | GRGCYC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 35 |
| Eco57I | CTGAAG | 1 cut(s) | 324 |
| EcoICRI | GAGCTC | 1 cut(s) | 35 |
| EcoT38I | GRGCYC | 1 cut(s) | 37 |
| FaeI | CATG | 1 cut(s) | 196 |
| FaiI | YATR | 4 cut(s) | 102, 194, 428, 450 |
| FatI | CATG | 1 cut(s) | 192 |
| FokI | GGATG | 2 cut(s) | 215, 305 |
| FriOI | GRGCYC | 1 cut(s) | 37 |
| FspBI | CTAG | 4 cut(s) | 140, 299, 375, 414 |
| GsuI | CTGGAG | 1 cut(s) | 88 |
| Hin1II | CATG | 1 cut(s) | 196 |
| HinfI | GANTC | 1 cut(s) | 272 |
| HphI | GGTGA | 2 cut(s) | 35, 401 |
| Hpy166II | GTNNAC | 1 cut(s) | 433 |
| Hpy188I | TCNGA | 3 cut(s) | 171, 505, 540 |
| Hpy188III | TCNNGA | 4 cut(s) | 67, 76, 398, 461 |
| Hpy8I | GTNNAC | 1 cut(s) | 433 |
| HpyAV | CCTTC | 3 cut(s) | 146, 166, 193 |
| HpyCH4III | ACNGT | 1 cut(s) | 88 |
| HpyCH4IV | ACGT | 1 cut(s) | 355 |
| HpyCH4V | TGCA | 3 cut(s) | 218, 263, 481 |
| HpyF3I | CTNAG | 3 cut(s) | 115, 168, 182 |
| HpySE526I | ACGT | 1 cut(s) | 355 |
| Hsp92II | CATG | 1 cut(s) | 196 |
| Kzo9I | GATC | 4 cut(s) | 25, 185, 246, 535 |
| LmnI | GCTCC | 3 cut(s) | 40, 69, 178 |
| LpnPI | CCDG | 2 cut(s) | 52, 239 |
| LweI | GCATC | 4 cut(s) | 81, 154, 193, 505 |
| MaeI | CTAG | 4 cut(s) | 140, 299, 375, 414 |
| MaeII | ACGT | 1 cut(s) | 355 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MalI | GATC | 4 cut(s) | 27, 187, 248, 537 |
| MboI | GATC | 4 cut(s) | 25, 185, 246, 535 |
| MboII | GAAGA | 8 cut(s) | 20, 134, 208, 241, 267, 317, 476, 559 |
| MflI | RGATCY | 1 cut(s) | 246 |
| MhlI | GDGCHC | 1 cut(s) | 37 |
| MluCI | AATT | 2 cut(s) | 55, 486 |
| MlyI | GAGTC | 1 cut(s) | 281 |
| MmeI | TCCRAC | 1 cut(s) | 28 |
| MnlI | CCTC | 3 cut(s) | 262, 308, 468 |
| MseI | TTAA | 1 cut(s) | 562 |
| MslI | CAYNNNNRTG | 2 cut(s) | 77, 377 |
| NdeII | GATC | 4 cut(s) | 25, 185, 246, 535 |
| NlaIII | CATG | 1 cut(s) | 196 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| Ppu21I | YACGTR | 1 cut(s) | 356 |
| Psp124BI | GAGCTC | 1 cut(s) | 37 |
| PsuI | RGATCY | 1 cut(s) | 246 |
| RsaI | GTAC | 4 cut(s) | 90, 113, 148, 319 |
| RsaNI | GTAC | 4 cut(s) | 89, 112, 147, 318 |
| RseI | CAYNNNNRTG | 2 cut(s) | 77, 377 |
| SacI | GAGCTC | 1 cut(s) | 37 |
| SaqAI | TTAA | 1 cut(s) | 562 |
| Sau3AI | GATC | 4 cut(s) | 25, 185, 246, 535 |
| ScaI | AGTACT | 1 cut(s) | 90 |
| SchI | GAGTC | 1 cut(s) | 281 |
| SduI | GDGCHC | 1 cut(s) | 37 |
| SfaNI | GCATC | 4 cut(s) | 81, 154, 193, 505 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 77, 377 |
| SmlI | CTYRAG | 2 cut(s) | 10, 16 |
| SmoI | CTYRAG | 2 cut(s) | 10, 16 |
| SnaBI | TACGTA | 1 cut(s) | 356 |
| Sse9I | AATT | 2 cut(s) | 55, 486 |
| SspI | AATATT | 1 cut(s) | 259 |
| SspMI | CTAG | 4 cut(s) | 140, 299, 375, 414 |
| SstI | GAGCTC | 1 cut(s) | 37 |
| TaaI | ACNGT | 1 cut(s) | 88 |
| TaiI | ACGT | 1 cut(s) | 358 |
| TaqI | TCGA | 2 cut(s) | 31, 513 |
| TasI | AATT | 2 cut(s) | 55, 486 |
| TatI | WGTACW | 1 cut(s) | 88 |
| Tru1I | TTAA | 1 cut(s) | 562 |
| Tru9I | TTAA | 1 cut(s) | 562 |
| TspDTI | ATGAA | 4 cut(s) | 95, 209, 395, 455 |
| TspGWI | ACGGA | 1 cut(s) | 164 |
| XapI | RAATTY | 1 cut(s) | 486 |
| XspI | CTAG | 4 cut(s) | 140, 299, 375, 414 |
| ZrmI | AGTACT | 1 cut(s) | 90 |