gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 54 - 98 | 3.2e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 340 |
| AciI | CCGC | 2 cut(s) | 72, 340 |
| AclWI | GGATC | 1 cut(s) | 374 |
| AgsI | TTSAA | 4 cut(s) | 157, 229, 320, 373 |
| AjnI | CCWGG | 2 cut(s) | 175, 362 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 137, 169 |
| AluBI | AGCT | 2 cut(s) | 268, 296 |
| AluI | AGCT | 2 cut(s) | 268, 296 |
| AlwI | GGATC | 1 cut(s) | 374 |
| AsuHPI | GGTGA | 1 cut(s) | 86 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 98, 132, 318, 352 |
| BciT130I | CCWGG | 2 cut(s) | 177, 364 |
| BfaI | CTAG | 1 cut(s) | 222 |
| Bme1390I | CCNGG | 2 cut(s) | 177, 364 |
| BmrFI | CCNGG | 2 cut(s) | 177, 364 |
| BmsI | GCATC | 1 cut(s) | 112 |
| BsaJI | CCNNGG | 1 cut(s) | 129 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| BseBI | CCWGG | 2 cut(s) | 177, 364 |
| BseDI | CCNNGG | 1 cut(s) | 129 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseMII | CTCAG | 1 cut(s) | 260 |
| Bsh1236I | CGCG | 1 cut(s) | 340 |
| BslFI | GGGAC | 1 cut(s) | 8 |
| BsmFI | GGGAC | 1 cut(s) | 8 |
| Bsp143I | GATC | 4 cut(s) | 49, 313, 366, 382 |
| BspACI | CCGC | 2 cut(s) | 72, 340 |
| BspCNI | CTCAG | 1 cut(s) | 261 |
| BspFNI | CGCG | 1 cut(s) | 340 |
| BspPI | GGATC | 1 cut(s) | 374 |
| BssECI | CCNNGG | 1 cut(s) | 129 |
| BssMI | GATC | 4 cut(s) | 49, 313, 366, 382 |
| BssT1I | CCWWGG | 1 cut(s) | 129 |
| Bst2UI | CCWGG | 2 cut(s) | 177, 364 |
| BstDEI | CTNAG | 1 cut(s) | 269 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstFNI | CGCG | 1 cut(s) | 340 |
| BstKTI | GATC | 4 cut(s) | 52, 316, 369, 385 |
| BstMBI | GATC | 4 cut(s) | 49, 313, 366, 382 |
| BstNI | CCWGG | 2 cut(s) | 177, 364 |
| BstSCI | CCNGG | 2 cut(s) | 175, 362 |
| BstUI | CGCG | 1 cut(s) | 340 |
| BstX2I | RGATCY | 1 cut(s) | 366 |
| BstYI | RGATCY | 1 cut(s) | 366 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| BtsI | GCAGTG | 1 cut(s) | 49 |
| BtsIMutI | CAGTG | 2 cut(s) | 49, 59 |
| CviAII | CATG | 1 cut(s) | 20 |
| CviJI | RGCY | 4 cut(s) | 236, 268, 296, 324 |
| CviKI_1 | RGCY | 4 cut(s) | 236, 268, 296, 324 |
| DdeI | CTNAG | 1 cut(s) | 269 |
| DpnI | GATC | 4 cut(s) | 51, 315, 368, 384 |
| DpnII | GATC | 4 cut(s) | 49, 313, 366, 382 |
| Eco130I | CCWWGG | 1 cut(s) | 129 |
| EcoRII | CCWGG | 2 cut(s) | 175, 362 |
| EcoT14I | CCWWGG | 1 cut(s) | 129 |
| ErhI | CCWWGG | 1 cut(s) | 129 |
| FaeI | CATG | 1 cut(s) | 23 |
| FaiI | YATR | 4 cut(s) | 21, 239, 327, 353 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 300, 332 |
| FaqI | GGGAC | 1 cut(s) | 8 |
| FatI | CATG | 1 cut(s) | 19 |
| FokI | GGATG | 1 cut(s) | 159 |
| FspBI | CTAG | 1 cut(s) | 222 |
| Hin1II | CATG | 1 cut(s) | 23 |
| HindIII | AAGCTT | 1 cut(s) | 294 |
| HinfI | GANTC | 3 cut(s) | 110, 169, 273 |
| HphI | GGTGA | 1 cut(s) | 86 |
| Hpy188I | TCNGA | 2 cut(s) | 304, 387 |
| Hpy188III | TCNNGA | 1 cut(s) | 317 |
| HpyAV | CCTTC | 2 cut(s) | 150, 314 |
| HpyCH4V | TGCA | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 1 cut(s) | 269 |
| Hsp92II | CATG | 1 cut(s) | 23 |
| Kzo9I | GATC | 4 cut(s) | 49, 313, 366, 382 |
| LpnPI | CCDG | 4 cut(s) | 162, 189, 349, 376 |
| LweI | GCATC | 1 cut(s) | 112 |
| MaeI | CTAG | 1 cut(s) | 222 |
| MalI | GATC | 4 cut(s) | 51, 315, 368, 384 |
| MboI | GATC | 4 cut(s) | 49, 313, 366, 382 |
| MboII | GAAGA | 4 cut(s) | 44, 146, 317, 361 |
| MflI | RGATCY | 1 cut(s) | 366 |
| MluCI | AATT | 2 cut(s) | 214, 373 |
| MnlI | CCTC | 3 cut(s) | 36, 66, 136 |
| MseI | TTAA | 2 cut(s) | 251, 279 |
| MspR9I | CCNGG | 2 cut(s) | 177, 364 |
| MvaI | CCWGG | 2 cut(s) | 177, 364 |
| MvnI | CGCG | 1 cut(s) | 340 |
| NdeII | GATC | 4 cut(s) | 49, 313, 366, 382 |
| NlaIII | CATG | 1 cut(s) | 23 |
| PfeI | GAWTC | 3 cut(s) | 110, 169, 273 |
| PfoI | TCCNGGA | 2 cut(s) | 175, 362 |
| Psp6I | CCWGG | 2 cut(s) | 175, 362 |
| PspGI | CCWGG | 2 cut(s) | 175, 362 |
| PsuI | RGATCY | 1 cut(s) | 366 |
| SaqAI | TTAA | 2 cut(s) | 251, 279 |
| Sau3AI | GATC | 4 cut(s) | 49, 313, 366, 382 |
| ScrFI | CCNGG | 2 cut(s) | 177, 364 |
| SetI | ASST | 3 cut(s) | 142, 270, 298 |
| SfaNI | GCATC | 1 cut(s) | 112 |
| Sse9I | AATT | 2 cut(s) | 214, 373 |
| SsiI | CCGC | 2 cut(s) | 72, 340 |
| SspMI | CTAG | 1 cut(s) | 222 |
| StyD4I | CCNGG | 2 cut(s) | 175, 362 |
| StyI | CCWWGG | 1 cut(s) | 129 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 2 cut(s) | 214, 373 |
| TfiI | GAWTC | 3 cut(s) | 110, 169, 273 |
| Tru1I | TTAA | 2 cut(s) | 251, 279 |
| Tru9I | TTAA | 2 cut(s) | 251, 279 |
| TscAI | CASTG | 2 cut(s) | 49, 66 |
| TspDTI | ATGAA | 3 cut(s) | 102, 288, 347 |
| TspRI | CASTG | 2 cut(s) | 49, 66 |
| XspI | CTAG | 1 cut(s) | 222 |