FvH4_6g02393

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000106
Physical Location & Seq
Reverse (-)
1387054 .. 1390134
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02393.t1

Sequence Viewer

Length: 3081 bp
ATGTCCGGTGACGGTATCATTCCACCACTTCCCAAATCTGATGACGCTGATCCAGAGCCTTCATTAGAAATTCCAAAGACCTCATCAGAAGTTCTTAATGATTCTTTCAAGGCAGAGCCTTCAAATCCCTATTTCATTCACCATTCGGATCATCCCGGATTGGTTCTTGTCTCCAAACTCCTAAATGGGGATAACTATTCTGGTTGGAAAAGGGCTATGGTTAGAGCTCTAAATTCCAAGAACAAGCTTGGATTTGTCAATGGTTCCGTCAAAGCTCCCTCAGAAGAAACTGATCCTGAAGGCTATGCGACTTGGTCGCGATGCAATGATATGGTCCATTCTTGGATCGTCAATTCTTGCGATCCAGAGATAGCTGACAGCGTGACATATTATCCCACTGCTCACGAGGTTTGGGAGGACCTCCATGAACGCTTTTCTCAAGCAAATGCGACACGCATCTTTGAGATTCAGAGAGATATCAACTATCTTCGACAAGAACAACTCTCTATCTCAGTCTATTACACGAAGTTGAAGGCCCTATGGGATGAGTTAGCAACACTTGATGCGACACAAGCAGCACAATCGGATCAACAAAGATTGATGCATTTTCTAATGGGGTTAAATGAAACTTACCAGGCTATCCGTGGCCAAATCCTTCTCATGAAGCCTCTACCCACTGTTCGTCAAGCTTTCTCTTCAGTTCTTCAGGAAGAAAAGCAGCGCCTGATTGCCTCAAGCCGCACGACAGAGGATTCTGGCAACGTTGCCGCCATGGCTGTGCGACCTGGAAATAATGGGCCGGCGGTGGAAGCTAGAAGTGGCGGAACCAATCGGCTCTCAGAGGGGCGATCAAATCAGGACCAGCGTGGCGGCGGTGGAGGAGGTCAGCGCGCCTGGAATGGAGGAAGGCGAGTTGATCAGAACCAGCGACGCTTTGGTTCAGAAAGAAGGAGACCACATTGCACGTATTGTAACGATATGGGTCATTGGGTCCAAACTTGTCATAAGTTACATGGATATCCTGAAGGTCACCCAAGAGCAAGAAACAATCACAAAGCTGCTGCTAATTATGCATCGGAGGAAAGATTGGTTTCGATACCAGAGGATCAGTTCAAGCAGTTGCTATCACTTATTCCCAAGACTCAAGATGAGGAGTCTGGTTCCAAGGCTAATGCGGTAACAAAACCAGGTTTGTCTAATGTCGTTTCCCGCAATTGGATTATTGATAGCGGGGCGACAGATCATATTACTTCCTCATCTAGACTATTGCATAAAGTTCAAGACTATTATTCATTCCCTTCTGTTTCATTGCCTAGTGGAGAACAAGCCAAAATTGTTGCAAAAGGATCTATGCCTTTGAATTCCAATTATTATCTCCATGATGTGTTGTCGGTTCCCACGTTCAAAGTTGATTTGATGTCTGTTAGTCGTTTGACGAGGAGTCTGAATTGCTCAGTGACTTTTTATCCATATTGGTGTATTTTGCAGGATCTGGCTACAAGGAGGACGATTGGTTTGGGTAAACTGCGAGATGGACTTTATTACCTAGCGGCACTTGCGACGGAGAAGTCTTCGACCAACCGATCCTTACCACCAAATAAACCAGCCTGTCATCTCAGCATTTCTTCCACCGATCTCTGGCACAGTCGCCTAGGCCATGTATCATCTCCTTGTTTGAGTTTCATCGCCAAGAATTTTTTGAAATTTTCCATTCAATCCAATAATGCTTGCCCTATATGTCCTTTGGCTAAGCAAAGTCGTTTGTCTTTTCCTACTAGTGTTATTTCTTCAACAAAACCTTTAGAGCTTATTCATTGTGACATTTGGGGTCGTTATCGACATCCTTCTCTTTCTGGTTCCCATTATTTTCTCACCATTGTTGATGACTATACACGTTTTACATGGATATTTCTGATGCGATTTAAAGATGAAGCACAACCACTCATTAAACGTTTCTTTAGTTATGCTTCCACACAATTTGATTGTCGCATTAAAACTTTTCGTAGCGACAATGGTGGTGAATTTCTTTCCCTTCGTTCTTTTTTTCTAGACAACGGTGTCATCTTTCAGCATTCTTGTGTTTACACGCCCCAACAAAATGGGGTTGTGGAACGCAAACACCGTCACATTCTGCAAGTAGCTCGAGCTTTGAAATTTCAGGCTCACCTTCCTACCCAATTTTGGGGGGAGTGTGCTCTCACCGCTGTCCACATCATCAATCGATTACCTTCTCCATTACTTTCTTTCAAAACACCATATGAATTGCTTTACTCAAAATCTCCCGGTTACTCTCATCTCCGTGTTTTCGGTTGTTTAGCCTATGCTACTAATGTCCACCCATCACATAAATTTGATCATCGTGCCATGCCATCCATTTTCATTGGTTACCCCGTTGGACAAAAAGGCTATAAGTTATTTGATTTATCGGCTCGCAAAATCTTTACTAGCCGTGACGTCAAATTTCACGAAAACATATTTCCTTATCTCAGTAAAGAGTATAGCCCACCCCTCCCATATTCAAAAGCCCAAACCTCGGGCCCACTTCCAATCCTCTCCTTCCTTGATCACTCTTTTGAGTTGCCGTCCCCTCCAACTCCAGAAAACAACGACACCAACTCCTCCAATTCGGACACCCCGATCTCACATCCTTCCTCTCCTGATCCCGTCTCTTCCCCTCAGGCGTCGCCGCCGCCTCCGCCACCACCACCGCCGCCTCTTCTTCAATATTCTCGCCGTTCCAAGGCGACCTCCCAGCCAGAAAACCCGATCCCAAATCCTCCATCCTCTTCTGATTCCGCTCCCACTTCTCCAGCGCCAATACCGGCTCCGCCTTCACCGTCCTATTCTCGCCATCCCACACATACTTCTCTCATCCCTCTGTCCATCCCTCTCTCATCTCCGACCGATCCGGACCCGCCTTCCACTACTCCGGCGTCGCCACCCCTAGCGCCGCCGTCCTCACCCCTCCGTTCTACTTCTCCAGCCGCGTCGCCCCTTCCTTCGCCAGAGATCGTTCCCGACCCTGCCGAGCCCCTTCGTCGCCCTCGCCGCCAAAACCGGTCCTCCTGTCAAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3

Protein Analysis

1027

Amino Acids

114.13

Weight (kDa)

8.97

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 47 - 93 1.5e-22 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 77 - 241 5.2e-12 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 406 - 480 1.1e-10 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 528 - 585 4e-12 GAG-pre-integrase domain
rve PF00665 598 - 697 6.4e-10 Integrase core domain
SH3_retrovirus PF25597 771 - 831 7.9e-19 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1567, 2057
AatII GACGTC 1 cut(s) 2457
AccBSI CCGCTC 1 cut(s) 2798
AccII CGCG 3 cut(s) 319, 891, 2987
AccIII TCCGGA 1 cut(s) 2908
AclI AACGTT 2 cut(s) 762, 1951
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 9 cut(s) 69, 232, 1360, 1693, 1703, 2021, 2153, 2348, 2459
AcuI CTGAAG 4 cut(s) 318, 681, 689, 1044
AcyI GRCGYC 3 cut(s) 2454, 2681, 2933
AfiI CCNNNNNNNGG 7 cut(s) 187, 1215, 1638, 2181, 2182, 2533, 2740
AflIII ACRYGT 1 cut(s) 1892
AgeI ACCGGT 1 cut(s) 3057
AhdI GACNNNNNGTC 1 cut(s) 1440
AhlI ACTAGT 1 cut(s) 1775
AjnI CCWGG 4 cut(s) 633, 784, 893, 1186
Alw21I GWGCWC 2 cut(s) 229, 2197
Alw26I GTCTC 3 cut(s) 175, 946, 2671
AlwNI CAGNNNCTG 2 cut(s) 724, 1492
Ama87I CYCGRG 2 cut(s) 2142, 2533
Aor13HI TCCGGA 1 cut(s) 2908
AoxI GGCC 5 cut(s) 534, 646, 797, 1654, 2536
ApaI GGGCCC 1 cut(s) 2540
ApeKI GCWGC 4 cut(s) 575, 718, 1058, 1061
ApoI RAATTY 9 cut(s) 69, 232, 1360, 1693, 1703, 2021, 2153, 2348, 2459
ArsI GACNNNNNNTTYG 2 cut(s) 1498, 1530
AsiGI ACCGGT 1 cut(s) 3057
AspA2I CCTAGG 1 cut(s) 1651
AspLEI GCGC 5 cut(s) 723, 891, 893, 2815, 2950
AsuC2I CCSGG 2 cut(s) 156, 2283
AsuHPI GGTGA 9 cut(s) 20, 131, 1022, 1864, 2030, 2156, 2191, 2826, 2952
AvaI CYCGRG 2 cut(s) 2142, 2533
AvaII GGWCC 6 cut(s) 334, 418, 859, 991, 2911, 3060
AvrII CCTAGG 1 cut(s) 1651
AxyI CCTNAGG 1 cut(s) 2676
BaeGI GKGCMC 1 cut(s) 2540
BalI TGGCCA 1 cut(s) 648
BanII GRGCYC 3 cut(s) 229, 2540, 3033
BauI CACGAG 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 1563
Bbv12I GWGCWC 2 cut(s) 229, 2197
BbvI GCAGC 4 cut(s) 587, 730, 1045, 1048
BccI CCATC 6 cut(s) 1526, 2347, 2377, 2788, 2859, 2891
BceAI ACGGC 4 cut(s) 2433, 2566, 2718, 2938
BcgI CGANNNNNNTGC 4 cut(s) 564, 598, 2123, 2157
BciT130I CCWGG 4 cut(s) 635, 786, 895, 1188
BclI TGATCA 3 cut(s) 916, 2353, 2563
BcnI CCSGG 2 cut(s) 156, 2283
BcoDI GTCTC 3 cut(s) 175, 946, 2671
BcuI ACTAGT 1 cut(s) 1775
BfaI CTAG 9 cut(s) 813, 1260, 1314, 1547, 1652, 1776, 2048, 2445, 2945
BfoI RGCGCY 3 cut(s) 724, 2816, 2951
BglI GCCNNNNNGGC 1 cut(s) 773
BlnI CCTAGG 1 cut(s) 1651
BlpI GCTNAGC 1 cut(s) 1749
Bme1390I CCNGG 6 cut(s) 156, 635, 786, 895, 1188, 2283
Bme18I GGWCC 6 cut(s) 334, 418, 859, 991, 2911, 3060
BmeRI GACNNNNNGTC 1 cut(s) 1440
BmeT110I CYCGRG 2 cut(s) 2142, 2533
BmiI GGNNCC 9 cut(s) 265, 826, 992, 1162, 1395, 1858, 2538, 2826, 2913
BmrFI CCNGG 6 cut(s) 156, 635, 786, 895, 1188, 2283
BmsI GCATC 6 cut(s) 311, 465, 553, 591, 1082, 1905
BpiI GAAGAC 1 cut(s) 1563
BpmI CTGGAG 3 cut(s) 2580, 2793, 2964
Bpu1102I GCTNAGC 1 cut(s) 1749
BpuEI CTTGAG 3 cut(s) 423, 718, 1128
BpuMI CCSGG 2 cut(s) 156, 2283
Bsa29I ATCGAT 1 cut(s) 2221
BsaAI YACGTR 1 cut(s) 966
BsaHI GRCGYC 3 cut(s) 2454, 2681, 2933
BsaI GGTCTC 1 cut(s) 946
BsaJI CCNNGG 6 cut(s) 643, 771, 1164, 1651, 2532, 2739
BsaWI WCCGGW 3 cut(s) 5, 2908, 3057
BsaXI ACNNNNNCTCC 4 cut(s) 2600, 2630, 3047, 3077
Bsc4I CCNNNNNNNGG 7 cut(s) 187, 1215, 1638, 2181, 2182, 2533, 2740
Bse118I RCCGGY 3 cut(s) 799, 2821, 3057
Bse21I CCTNAGG 1 cut(s) 2676
Bse3DI GCAATG 3 cut(s) 331, 958, 1307
BseAI TCCGGA 1 cut(s) 2908
BseBI CCWGG 4 cut(s) 635, 786, 895, 1188
BseCI ATCGAT 1 cut(s) 2221
BseDI CCNNGG 6 cut(s) 643, 771, 1164, 1651, 2532, 2739
BseGI GGATG 9 cut(s) 151, 550, 1840, 2369, 2644, 2780, 2851, 2871, 2883
BseLI CCNNNNNNNGG 7 cut(s) 187, 1215, 1638, 2181, 2182, 2533, 2740
BseMI GCAATG 3 cut(s) 331, 958, 1307
BseMII CTCAG 7 cut(s) 294, 525, 852, 1467, 1630, 2500, 2690
BsePI GCGCGC 1 cut(s) 889
BseRI GAGGAG 4 cut(s) 894, 1166, 1453, 2608
BseSI GKGCMC 1 cut(s) 2540
BseXI GCAGC 4 cut(s) 587, 730, 1045, 1048
BseYI CCCAGC 1 cut(s) 2751
Bsh1236I CGCG 3 cut(s) 319, 891, 2987
Bsh1285I CGRYCG 1 cut(s) 2904
BshFI GGCC 5 cut(s) 536, 648, 799, 1656, 2538
BshTI ACCGGT 1 cut(s) 3057
BshVI ATCGAT 1 cut(s) 2221
BsiEI CGRYCG 1 cut(s) 2904
BsiHKAI GWGCWC 2 cut(s) 229, 2197
BsiHKCI CYCGRG 2 cut(s) 2142, 2533
BsiSI CCGG 8 cut(s) 6, 156, 800, 2283, 2822, 2909, 2930, 3058
BslFI GGGAC 1 cut(s) 2569
BslI CCNNNNNNNGG 7 cut(s) 187, 1215, 1638, 2181, 2182, 2533, 2740
BsmAI GTCTC 3 cut(s) 175, 946, 2671
BsmBI CGTCTC 1 cut(s) 2671
BsmFI GGGAC 1 cut(s) 2569
BsmI GAATGC 1 cut(s) 2071
BsnI GGCC 5 cut(s) 536, 648, 799, 1656, 2538
Bso31I GGTCTC 1 cut(s) 946
BsoBI CYCGRG 2 cut(s) 2142, 2533
Bsp120I GGGCCC 1 cut(s) 2536
Bsp1286I GDGCHC 4 cut(s) 229, 2197, 2540, 3033
Bsp13I TCCGGA 1 cut(s) 2908
Bsp1720I GCTNAGC 1 cut(s) 1749
Bsp19I CCATGG 1 cut(s) 771
Bsp68I TCGCGA 1 cut(s) 319
BspANI GGCC 5 cut(s) 536, 648, 799, 1656, 2538
BspCNI CTCAG 7 cut(s) 293, 524, 851, 1466, 1629, 2499, 2689
BspDI ATCGAT 1 cut(s) 2221
BspEI TCCGGA 1 cut(s) 2908
BspFNI CGCG 3 cut(s) 319, 891, 2987
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 9 cut(s) 265, 826, 992, 1162, 1395, 1858, 2538, 2826, 2913
BspTNI GGTCTC 1 cut(s) 946
BsrBI CCGCTC 1 cut(s) 2798
BsrDI GCAATG 3 cut(s) 331, 958, 1307
BsrFI RCCGGY 3 cut(s) 799, 2821, 3057
BssAI RCCGGY 3 cut(s) 799, 2821, 3057
BssECI CCNNGG 6 cut(s) 643, 771, 1164, 1651, 2532, 2739
BssHII GCGCGC 1 cut(s) 889
BssNI GRCGYC 3 cut(s) 2454, 2681, 2933
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 4 cut(s) 771, 1164, 1651, 2739
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 4 cut(s) 635, 786, 895, 1188
Bst4CI ACNGT 6 cut(s) 14, 679, 1646, 2057, 2123, 2838
Bst6I CTCTTC 4 cut(s) 700, 2674, 2721, 2791
BstACI GRCGYC 3 cut(s) 2454, 2681, 2933
BstBAI YACGTR 1 cut(s) 966
BstC8I GCNNGC 4 cut(s) 801, 891, 1729, 2431
BstDEI CTNAG 8 cut(s) 280, 511, 838, 1453, 1616, 1749, 2486, 2676
BstDSI CCRYGG 2 cut(s) 643, 771
BstEII GGTNACC 2 cut(s) 1028, 2384
BstF5I GGATG 9 cut(s) 151, 550, 1840, 2369, 2644, 2780, 2851, 2871, 2883
BstFNI CGCG 3 cut(s) 319, 891, 2987
BstH2I RGCGCY 3 cut(s) 724, 2816, 2951
BstHHI GCGC 5 cut(s) 723, 891, 893, 2815, 2950
BstMAI GTCTC 3 cut(s) 175, 946, 2671
BstMCI CGRYCG 1 cut(s) 2904
BstMWI GCNNNNNNNGC 8 cut(s) 572, 773, 809, 1070, 1556, 2201, 2695, 3048
BstNI CCWGG 4 cut(s) 635, 786, 895, 1188
BstPI GGTNACC 2 cut(s) 1028, 2384
BstSCI CCNGG 6 cut(s) 154, 633, 784, 893, 1186, 2281
BstSLI GKGCMC 1 cut(s) 2540
BstUI CGCG 3 cut(s) 319, 891, 2987
BstV1I GCAGC 4 cut(s) 587, 730, 1045, 1048
BstV2I GAAGAC 1 cut(s) 1563
BstX2I RGATCY 2 cut(s) 1346, 1489
BstXI CCANNNNNNTGG 1 cut(s) 2099
BstYI RGATCY 2 cut(s) 1346, 1489
Bsu15I ATCGAT 1 cut(s) 2221
Bsu36I CCTNAGG 1 cut(s) 2676
BsuRI GGCC 5 cut(s) 536, 648, 799, 1656, 2538
BsuTUI ATCGAT 1 cut(s) 2221
BtgI CCRYGG 2 cut(s) 643, 771
BtgZI GCGATG 2 cut(s) 334, 1669
BtsCI GGATG 9 cut(s) 151, 550, 1840, 2369, 2644, 2780, 2851, 2871, 2883
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 3 cut(s) 396, 675, 1461
BtuMI TCGCGA 1 cut(s) 319
Cac8I GCNNGC 4 cut(s) 801, 891, 1729, 2431
CaiI CAGNNNCTG 2 cut(s) 724, 1492
CciI TCATGA 1 cut(s) 660
CfoI GCGC 5 cut(s) 723, 891, 893, 2815, 2950
Cfr10I RCCGGY 3 cut(s) 799, 2821, 3057
ClaI ATCGAT 1 cut(s) 2221
CseI GACGC 5 cut(s) 53, 939, 2670, 2922, 2976
CsiI ACCWGGT 1 cut(s) 1186
CspAI ACCGGT 1 cut(s) 3057
CspCI CAANNNNNGTGG 2 cut(s) 1960, 1995
CviAII CATG 8 cut(s) 425, 661, 772, 1013, 1379, 1658, 1902, 2365
DdeI CTNAG 8 cut(s) 280, 511, 838, 1453, 1616, 1749, 2486, 2676
DraI TTTAAA 1 cut(s) 1924
DrdI GACNNNNNNGTC 2 cut(s) 1567, 2057
DriI GACNNNNNGTC 1 cut(s) 1440
DseDI GACNNNNNNGTC 2 cut(s) 1567, 2057
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 4 cut(s) 700, 2674, 2721, 2791
Eam1105I GACNNNNNGTC 1 cut(s) 1440
EarI CTCTTC 4 cut(s) 700, 2674, 2721, 2791
EciI GGCGGA 3 cut(s) 837, 2685, 2817
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 4 cut(s) 771, 1164, 1651, 2739
Eco24I GRGCYC 3 cut(s) 229, 2540, 3033
Eco31I GGTCTC 1 cut(s) 946
Eco32I GATATC 2 cut(s) 478, 1019
Eco47I GGWCC 6 cut(s) 334, 418, 859, 991, 2911, 3060
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 4 cut(s) 318, 681, 689, 1044
Eco81I CCTNAGG 1 cut(s) 2676
Eco88I CYCGRG 2 cut(s) 2142, 2533
Eco91I GGTNACC 2 cut(s) 1028, 2384
EcoICRI GAGCTC 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 418, 535
EcoO65I GGTNACC 2 cut(s) 1028, 2384
EcoRI GAATTC 1 cut(s) 1360
EcoRII CCWGG 4 cut(s) 633, 784, 893, 1186
EcoRV GATATC 2 cut(s) 478, 1019
EcoT14I CCWWGG 4 cut(s) 771, 1164, 1651, 2739
EcoT22I ATGCAT 2 cut(s) 606, 1075
EcoT38I GRGCYC 3 cut(s) 229, 2540, 3033
ErhI CCWWGG 4 cut(s) 771, 1164, 1651, 2739
Esp3I CGTCTC 1 cut(s) 2671
FaeI CATG 8 cut(s) 428, 664, 775, 1016, 1382, 1661, 1905, 2368
FaqI GGGAC 1 cut(s) 2569
FatI CATG 8 cut(s) 424, 660, 771, 1012, 1378, 1657, 1901, 2364
FauI CCCGC 3 cut(s) 1217, 1223, 2922
FauNDI CATATG 1 cut(s) 2257
FbaI TGATCA 3 cut(s) 916, 2353, 2563
FokI GGATG 9 cut(s) 138, 557, 1827, 2356, 2631, 2767, 2838, 2858, 2870
FriOI GRGCYC 3 cut(s) 229, 2540, 3033
FspBI CTAG 9 cut(s) 813, 1260, 1314, 1547, 1652, 1776, 2048, 2445, 2945
GlaI GCGC 5 cut(s) 722, 890, 892, 2814, 2949
GsaI CCCAGC 1 cut(s) 2755
GsuI CTGGAG 3 cut(s) 2580, 2793, 2964
HaeII RGCGCY 3 cut(s) 724, 2816, 2951
HaeIII GGCC 5 cut(s) 536, 648, 799, 1656, 2538
HapII CCGG 8 cut(s) 6, 156, 800, 2283, 2822, 2909, 2930, 3058
HgaI GACGC 5 cut(s) 53, 939, 2670, 2922, 2976
HhaI GCGC 5 cut(s) 723, 891, 893, 2815, 2950
Hin1I GRCGYC 3 cut(s) 2454, 2681, 2933
Hin1II CATG 8 cut(s) 428, 664, 775, 1016, 1382, 1661, 1905, 2368
Hin6I GCGC 5 cut(s) 721, 889, 891, 2813, 2948
HinP1I GCGC 5 cut(s) 721, 889, 891, 2813, 2948
HindIII AAGCTT 2 cut(s) 245, 687
HinfI GANTC 7 cut(s) 101, 466, 752, 1141, 1154, 1441, 2792
HpaII CCGG 8 cut(s) 6, 156, 800, 2283, 2822, 2909, 2930, 3058
HphI GGTGA 9 cut(s) 20, 131, 1022, 1864, 2030, 2156, 2191, 2826, 2952
Hpy166II GTNNAC 4 cut(s) 1523, 2083, 2209, 2335
Hpy8I GTNNAC 4 cut(s) 1523, 2083, 2209, 2335
Hpy99I CGWCG 6 cut(s) 933, 1564, 2686, 2938, 2992, 3042
HpyCH4III ACNGT 6 cut(s) 14, 679, 1646, 2057, 2123, 2838
HpyCH4IV ACGT 6 cut(s) 762, 965, 1400, 1894, 1951, 2454
HpyCH4V TGCA 8 cut(s) 324, 604, 963, 1073, 1270, 1340, 1486, 2134
HpyF10VI GCNNNNNNNGC 8 cut(s) 572, 773, 809, 1070, 1556, 2201, 2695, 3048
HpyF3I CTNAG 8 cut(s) 280, 511, 838, 1453, 1616, 1749, 2486, 2676
HpySE526I ACGT 6 cut(s) 762, 965, 1400, 1894, 1951, 2454
Hsp92I GRCGYC 3 cut(s) 2454, 2681, 2933
Hsp92II CATG 8 cut(s) 428, 664, 775, 1016, 1382, 1661, 1905, 2368
HspAI GCGC 5 cut(s) 721, 889, 891, 2813, 2948
Kpn2I TCCGGA 1 cut(s) 2908
KroI GCCGGC 1 cut(s) 799
KroNI GCCGGC 1 cut(s) 801
Ksp22I TGATCA 3 cut(s) 916, 2353, 2563
LmnI GCTCC 3 cut(s) 280, 2803, 2830
Lsp1109I GCAGC 4 cut(s) 587, 730, 1045, 1048
LweI GCATC 6 cut(s) 311, 465, 553, 591, 1082, 1905
MabI ACCWGGT 1 cut(s) 1186
MaeI CTAG 9 cut(s) 813, 1260, 1314, 1547, 1652, 1776, 2048, 2445, 2945
MaeII ACGT 6 cut(s) 762, 965, 1400, 1894, 1951, 2454
MbiI CCGCTC 1 cut(s) 2798
MfeI CAATTG 1 cut(s) 1213
MflI RGATCY 2 cut(s) 1346, 1489
MhlI GDGCHC 4 cut(s) 229, 2197, 2540, 3033
MlsI TGGCCA 1 cut(s) 648
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 3 cut(s) 1135, 1163, 1450
MmeI TCCRAC 4 cut(s) 185, 2374, 2615, 2924
Mox20I TGGCCA 1 cut(s) 648
Mph1103I ATGCAT 2 cut(s) 606, 1075
MroI TCCGGA 1 cut(s) 2908
MroNI GCCGGC 1 cut(s) 799
MscI TGGCCA 1 cut(s) 648
MseI TTAA 5 cut(s) 96, 620, 1923, 1947, 1992
MslI CAYNNNNRTG 4 cut(s) 776, 1474, 2076, 2298
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 2204
MspI CCGG 8 cut(s) 6, 156, 800, 2283, 2822, 2909, 2930, 3058
MspR9I CCNGG 6 cut(s) 156, 635, 786, 895, 1188, 2283
MunI CAATTG 1 cut(s) 1213
Mva1269I GAATGC 1 cut(s) 2071
MvaI CCWGG 4 cut(s) 635, 786, 895, 1188
MvnI CGCG 3 cut(s) 319, 891, 2987
MwoI GCNNNNNNNGC 8 cut(s) 572, 773, 809, 1070, 1556, 2201, 2695, 3048
NaeI GCCGGC 1 cut(s) 801
NciI CCSGG 2 cut(s) 156, 2283
NcoI CCATGG 1 cut(s) 771
NdeI CATATG 1 cut(s) 2257
NgoMIV GCCGGC 1 cut(s) 799
NlaIII CATG 8 cut(s) 428, 664, 775, 1016, 1382, 1661, 1905, 2368
NlaIV GGNNCC 9 cut(s) 265, 826, 992, 1162, 1395, 1858, 2538, 2826, 2913
NmeAIII GCCGAG 1 cut(s) 3052
NmuCI GTSAC 7 cut(s) 8, 382, 1028, 1456, 1817, 2123, 2450
NruI TCGCGA 1 cut(s) 319
NsiI ATGCAT 2 cut(s) 606, 1075
PaeR7I CTCGAG 1 cut(s) 2142
PagI TCATGA 1 cut(s) 660
PauI GCGCGC 1 cut(s) 889
PcsI WCGNNNNNNNCGW 3 cut(s) 1397, 2119, 2633
PctI GAATGC 1 cut(s) 2071
PdiI GCCGGC 1 cut(s) 801
PfeI GAWTC 4 cut(s) 101, 466, 752, 2792
PflFI GACNNNGTC 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 3057
PleI GAGTC 3 cut(s) 1135, 1162, 1449
PpsI GAGTC 3 cut(s) 1135, 1162, 1449
Ppu21I YACGTR 1 cut(s) 966
PpuMI RGGWCCY 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 229
Psp1406I AACGTT 2 cut(s) 762, 1951
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 4 cut(s) 633, 784, 893, 1186
PspEI GGTNACC 2 cut(s) 1028, 2384
PspFI CCCAGC 1 cut(s) 2751
PspGI CCWGG 4 cut(s) 633, 784, 893, 1186
PspN4I GGNNCC 9 cut(s) 265, 826, 992, 1162, 1395, 1858, 2538, 2826, 2913
PspOMI GGGCCC 1 cut(s) 2536
PspPPI RGGWCCY 1 cut(s) 418
PspXI VCTCGAGB 1 cut(s) 2142
PstNI CAGNNNCTG 2 cut(s) 724, 1492
PsuI RGATCY 2 cut(s) 1346, 1489
PsyI GACNNNGTC 1 cut(s) 313
PteI GCGCGC 1 cut(s) 889
RruI TCGCGA 1 cut(s) 319
RseI CAYNNNNRTG 4 cut(s) 776, 1474, 2076, 2298
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 5 cut(s) 96, 620, 1923, 1947, 1992
SchI GAGTC 3 cut(s) 1135, 1163, 1450
ScrFI CCNGG 6 cut(s) 156, 635, 786, 895, 1188, 2283
SduI GDGCHC 4 cut(s) 229, 2197, 2540, 3033
SexAI ACCWGGT 1 cut(s) 1186
SfaNI GCATC 6 cut(s) 311, 465, 553, 591, 1082, 1905
Sfr274I CTCGAG 1 cut(s) 2142
SinI GGWCC 6 cut(s) 334, 418, 859, 991, 2911, 3060
SlaI CTCGAG 1 cut(s) 2142
SmiMI CAYNNNNRTG 4 cut(s) 776, 1474, 2076, 2298
SmlI CTYRAG 4 cut(s) 438, 733, 1143, 2142
SmoI CTYRAG 4 cut(s) 438, 733, 1143, 2142
SpeI ACTAGT 1 cut(s) 1775
SspI AATATT 1 cut(s) 2726
SspMI CTAG 9 cut(s) 813, 1260, 1314, 1547, 1652, 1776, 2048, 2445, 2945
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 6 cut(s) 154, 633, 784, 893, 1186, 2281
StyI CCWWGG 4 cut(s) 771, 1164, 1651, 2739
TaaI ACNGT 6 cut(s) 14, 679, 1646, 2057, 2123, 2838
TaiI ACGT 6 cut(s) 765, 968, 1403, 1897, 1954, 2457
TaqI TCGA 6 cut(s) 490, 1094, 1574, 1837, 2143, 2221
TaqII GACCGA 1 cut(s) 2918
TfiI GAWTC 4 cut(s) 101, 466, 752, 2792
Tru1I TTAA 5 cut(s) 96, 620, 1923, 1947, 1992
Tru9I TTAA 5 cut(s) 96, 620, 1923, 1947, 1992
TscAI CASTG 3 cut(s) 403, 682, 1461
TseFI GTSAC 7 cut(s) 8, 382, 1028, 1456, 1817, 2123, 2450
TseI GCWGC 4 cut(s) 575, 718, 1058, 1061
Tsp45I GTSAC 7 cut(s) 8, 382, 1028, 1456, 1817, 2123, 2450
TspGWI ACGGA 5 cut(s) 256, 632, 1577, 2288, 2957
TspRI CASTG 3 cut(s) 403, 682, 1461
Tth111I GACNNNGTC 1 cut(s) 313
VpaK11BI GGWCC 6 cut(s) 334, 418, 859, 991, 2911, 3060
XapI RAATTY 9 cut(s) 69, 232, 1360, 1693, 1703, 2021, 2153, 2348, 2459
XbaI TCTAGA 2 cut(s) 1259, 2047
XcmI CCANNNNNNNNNTGG 2 cut(s) 641, 932
XhoI CTCGAG 1 cut(s) 2142
XmaJI CCTAGG 1 cut(s) 1651
XspI CTAG 9 cut(s) 813, 1260, 1314, 1547, 1652, 1776, 2048, 2445, 2945
ZraI GACGTC 1 cut(s) 2455
Zsp2I ATGCAT 2 cut(s) 606, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.