FvH4_5g38641

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000106
Physical Location & Seq
Forward (+)
28581501 .. 28583997
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38641.t1

Sequence Viewer

Length: 1236 bp
ATGGCAGGAGATGATCAAAACCCCGAACCAGCATCAAAAACCCCAGCATGGGAGAATTCAAACCACGCCCTATACATCCATCATTCTGATCAACCAGGAATGATTCTCGTTCCTCAACAACTAGTGGAGGACAACTTCAGCTCTTGGATTGAGAGCATGGACATGGCACTTCAGATCAAGAACAAAATAGGGTTCGTGAATGGAACTCTAACCAAACCCGTGAAGAATCCGGATGCACAACTGCAATGGAACCGTTGCAATATTCTCGTCAAGACATGGTTGCTAGGATCAATGTCACCACCAATTGCCAAAAGTTTCTCTCACTGCAAGGATGCAAGAACCGTTTGGCTTGAGCTACATGAGAGGTTTGGACAAACCAATATTGTTCAACTTTTCAATATTGAAAATTCTATTCACGATTGTACACAGGGATCTTCATCTGTTACAACCTTCTTTACCCAACTTAAAAGTCTCTGGGACGAGAAGGAATCCCTTTGCAACATTCCTGCGTGTGTATGTGAAGCAGGAGAGAAGATCCAATCGTATGTTGAAACTCAAAAGATCATGAAGTTCTTGATGGGCTTAACAGAAGAATTTGCTACTGTTCGAAGCAATATCATTGGCATGGATCCCTTGCCAAACCTAAACAAAGTTTATTCGATGGCACTAAGGCACGAGAAACAAGCAGCAGTCTCGGCCAGCAAAGCAATTATGCCGGCCTCGGACTCTGCTGCGTTTTGCGTGCAGCAGGCAGACATGAAAGGGAACAACAATGAGCCTCTGCATGAACCTTTTGCAGGCAGCGCACGCAAGCAGCAACGCAGTTCTGGTGGCAGCGACATGAAACCACGCTGTGCCAAATGCGATCGCTCCAACCACTCAACTGAGAATTGCAAGGCTCACCTGCGTTGTAGCACTTGCAACTATAGAGGCCATACTGCTGATACATGTCGTGCTCACTTGCGCTGCACCTTTTGCAATTTTAAAGGTCATACAGTTGACGAATGCAGGCAGAAGAAGAGGATGCAGTCCGGTGAAGGCTCAAGCCGAGTGAACCACATCTCGGCATTGTATGAAAATCACGGCCACACAACTGAGTCATTCCCATTTTCTCAGGCTGAGTGTGCACAGTTGAGGGAACTTCTCAAAGAAAACCAACCTCAAGCCGGTAAAATTACCAACTATGAAGAACTTTCTGGACCTACGATCGGGGAAGATGATTGGGATGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

412

Amino Acids

45.95

Weight (kDa)

6.47

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 27 - 73 5e-19 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 912
AccIII TCCGGA 1 cut(s) 229
AclWI GGATC 5 cut(s) 295, 439, 529, 623, 636
AcoI YGGCCR 2 cut(s) 696, 1084
AcsI RAATTY 3 cut(s) 55, 406, 593
AcuI CTGAAG 2 cut(s) 121, 155
AdeI CACNNNGTG 1 cut(s) 854
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 6 cut(s) 48, 49, 797, 1063, 1166, 1208
AflIII ACRYGT 1 cut(s) 947
AgsI TTSAA 5 cut(s) 60, 389, 397, 404, 551
AhlI ACTAGT 1 cut(s) 121
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 141, 355
AluI AGCT 2 cut(s) 141, 355
Alw21I GWGCWC 2 cut(s) 958, 1129
Alw26I GTCTC 2 cut(s) 476, 697
Alw44I GTGCAC 1 cut(s) 1125
AlwI GGATC 5 cut(s) 295, 439, 529, 623, 636
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 5 cut(s) 696, 717, 931, 1084, 1229
ApaLI GTGCAC 1 cut(s) 1125
ApeKI GCWGC 7 cut(s) 686, 731, 745, 801, 814, 834, 966
ApoI RAATTY 3 cut(s) 55, 406, 593
AsiSI GCGATCGC 1 cut(s) 868
AspLEI GCGC 2 cut(s) 806, 966
AspS9I GGNCC 2 cut(s) 1199, 1229
AsuHPI GGTGA 3 cut(s) 288, 893, 1046
AsuII TTCGAA 1 cut(s) 607
AvaII GGWCC 1 cut(s) 1199
BaeGI GKGCMC 1 cut(s) 1129
BamHI GGATCC 1 cut(s) 628
BauI CACGAG 1 cut(s) 674
Bbv12I GWGCWC 2 cut(s) 958, 1129
BbvI GCAGC 7 cut(s) 698, 718, 757, 813, 826, 846, 953
BccI CCATC 4 cut(s) 87, 571, 655, 1220
BceAI ACGGC 1 cut(s) 1099
BcgI CGANNNNNNTGC 4 cut(s) 247, 281, 675, 709
BciT130I CCWGG 1 cut(s) 96
BclI TGATCA 2 cut(s) 13, 88
BcoDI GTCTC 2 cut(s) 476, 697
BcuI ACTAGT 1 cut(s) 121
BfaI CTAG 2 cut(s) 122, 284
BfmI CTRYAG 1 cut(s) 925
BfuAI ACCTGC 1 cut(s) 912
BisI GCNGC 7 cut(s) 687, 732, 746, 802, 815, 835, 967
BlsI GCNGC 7 cut(s) 688, 733, 747, 803, 816, 836, 968
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 1199
BmgT120I GGNCC 2 cut(s) 1199, 1229
BmiI GGNNCC 2 cut(s) 251, 630
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 4 cut(s) 41, 223, 322, 1014
Bpu14I TTCGAA 1 cut(s) 607
BpuEI CTTGAG 3 cut(s) 371, 1027, 1146
BsaBI GATNNNNATC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 720
BsaWI WCCGGW 2 cut(s) 229, 1031
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 49, 797, 1063, 1166, 1208
Bse118I RCCGGY 2 cut(s) 715, 1166
Bse3DI GCAATG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 436
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 720
BseGI GGATG 5 cut(s) 75, 238, 337, 1029, 1231
BseJI GATNNNNATC 1 cut(s) 436
BseLI CCNNNNNNNGG 6 cut(s) 48, 49, 797, 1063, 1166, 1208
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 4 cut(s) 876, 1086, 1110, 1127
BseSI GKGCMC 1 cut(s) 1129
BseXI GCAGC 7 cut(s) 698, 718, 757, 813, 826, 846, 953
BseYI CCCAGC 1 cut(s) 43
BsgI GTGCAG 2 cut(s) 764, 952
Bsh1285I CGRYCG 2 cut(s) 868, 1209
BshFI GGCC 5 cut(s) 698, 719, 933, 1086, 1231
BsiEI CGRYCG 2 cut(s) 868, 1209
BsiHKAI GWGCWC 2 cut(s) 958, 1129
BsiSI CCGG 4 cut(s) 230, 716, 1032, 1167
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 6 cut(s) 48, 49, 797, 1063, 1166, 1208
BsmAI GTCTC 2 cut(s) 476, 697
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 5 cut(s) 698, 719, 933, 1086, 1231
Bsp119I TTCGAA 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 958, 1129
Bsp13I TCCGGA 1 cut(s) 229
Bsp1407I TGTACA 1 cut(s) 422
BspANI GGCC 5 cut(s) 698, 719, 933, 1086, 1231
BspCNI CTCAG 4 cut(s) 877, 1087, 1111, 1126
BspEI TCCGGA 1 cut(s) 229
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 2 cut(s) 251, 630
BspMI ACCTGC 1 cut(s) 912
BspPI GGATC 5 cut(s) 295, 439, 529, 623, 636
BspT104I TTCGAA 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 715, 1166
BsrGI TGTACA 1 cut(s) 422
BssAI RCCGGY 2 cut(s) 715, 1166
BssECI CCNNGG 1 cut(s) 720
BssSI CACGAG 1 cut(s) 674
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 5 cut(s) 254, 343, 604, 997, 1131
Bst6I CTCTTC 1 cut(s) 1013
BstAPI GCANNNNNTGC 1 cut(s) 975
BstAUI TGTACA 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 8 cut(s) 700, 717, 743, 750, 799, 808, 812, 1010
BstDEI CTNAG 5 cut(s) 668, 885, 1095, 1113, 1119
BstENI CCTNNNNNAGG 1 cut(s) 795
BstF5I GGATG 5 cut(s) 75, 238, 337, 1029, 1231
BstHHI GCGC 2 cut(s) 806, 966
BstMAI GTCTC 2 cut(s) 476, 697
BstMCI CGRYCG 2 cut(s) 868, 1209
BstMWI GCNNNNNNNGC 6 cut(s) 695, 704, 803, 807, 975, 1124
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 951
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 925
BstSLI GKGCMC 1 cut(s) 1129
BstV1I GCAGC 7 cut(s) 698, 718, 757, 813, 826, 846, 953
BstX2I RGATCY 3 cut(s) 431, 534, 628
BstYI RGATCY 3 cut(s) 431, 534, 628
BsuRI GGCC 5 cut(s) 698, 719, 933, 1086, 1231
BtsCI GGATG 5 cut(s) 75, 238, 337, 1029, 1231
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 322
BveI ACCTGC 1 cut(s) 912
Cac8I GCNNGC 8 cut(s) 700, 717, 743, 750, 799, 808, 812, 1010
CciI TCATGA 1 cut(s) 564
CfoI GCGC 2 cut(s) 806, 966
Cfr10I RCCGGY 2 cut(s) 715, 1166
Cfr13I GGNCC 2 cut(s) 1199, 1229
Csp6I GTAC 1 cut(s) 423
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 5 cut(s) 668, 885, 1095, 1113, 1119
DraI TTTAAA 1 cut(s) 985
DraIII CACNNNGTG 1 cut(s) 854
EaeI YGGCCR 2 cut(s) 696, 1084
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
Eco47I GGWCC 1 cut(s) 1199
Eco57I CTGAAG 2 cut(s) 121, 155
EcoNI CCTNNNNNAGG 1 cut(s) 795
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 94
FaqI GGGAC 1 cut(s) 491
FbaI TGATCA 2 cut(s) 13, 88
Fnu4HI GCNGC 7 cut(s) 687, 732, 746, 802, 815, 835, 967
FokI GGATG 4 cut(s) 62, 245, 344, 1036
Fsp4HI GCNGC 7 cut(s) 687, 732, 746, 802, 815, 835, 967
FspBI CTAG 2 cut(s) 122, 284
GlaI GCGC 2 cut(s) 805, 965
GluI GCNGC 7 cut(s) 687, 732, 746, 802, 815, 835, 967
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 5 cut(s) 698, 719, 933, 1086, 1231
HapII CCGG 4 cut(s) 230, 716, 1032, 1167
HhaI GCGC 2 cut(s) 806, 966
Hin6I GCGC 2 cut(s) 804, 964
HinP1I GCGC 2 cut(s) 804, 964
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HinfI GANTC 5 cut(s) 103, 226, 488, 725, 1097
HpaII CCGG 4 cut(s) 230, 716, 1032, 1167
HphI GGTGA 3 cut(s) 288, 893, 1046
Hpy166II GTNNAC 4 cut(s) 425, 1000, 1054, 1127
Hpy188I TCNGA 3 cut(s) 88, 174, 724
Hpy188III TCNNGA 8 cut(s) 178, 196, 230, 271, 416, 565, 574, 1197
Hpy8I GTNNAC 4 cut(s) 425, 1000, 1054, 1127
HpyAV CCTTC 3 cut(s) 460, 478, 1031
HpyCH4III ACNGT 5 cut(s) 254, 343, 604, 997, 1131
HpyF10VI GCNNNNNNNGC 6 cut(s) 695, 704, 803, 807, 975, 1124
HpyF3I CTNAG 5 cut(s) 668, 885, 1095, 1113, 1119
HspAI GCGC 2 cut(s) 804, 964
Kpn2I TCCGGA 1 cut(s) 229
KroI GCCGGC 1 cut(s) 715
KroNI GCCGGC 1 cut(s) 717
Ksp22I TGATCA 2 cut(s) 13, 88
LmnI GCTCC 1 cut(s) 875
Lsp1109I GCAGC 7 cut(s) 698, 718, 757, 813, 826, 846, 953
LweI GCATC 4 cut(s) 41, 223, 322, 1014
MaeI CTAG 2 cut(s) 122, 284
MaeIII GTNAC 2 cut(s) 294, 442
MboII GAAGA 8 cut(s) 235, 426, 544, 602, 1027, 1030, 1199, 1226
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 3 cut(s) 431, 534, 628
MhlI GDGCHC 2 cut(s) 958, 1129
MluCI AATT 8 cut(s) 55, 303, 406, 593, 708, 889, 979, 1173
MlyI GAGTC 2 cut(s) 719, 1106
MmeI TCCRAC 1 cut(s) 897
MnlI CCTC 9 cut(s) 121, 123, 357, 730, 789, 923, 1014, 1128, 1170
MroI TCCGGA 1 cut(s) 229
MroNI GCCGGC 1 cut(s) 715
MseI TTAA 3 cut(s) 465, 584, 984
MslI CAYNNNNRTG 2 cut(s) 161, 623
MspI CCGG 4 cut(s) 230, 716, 1032, 1167
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 1010
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 6 cut(s) 695, 704, 803, 807, 975, 1124
NaeI GCCGGC 1 cut(s) 717
NgoMIV GCCGGC 1 cut(s) 715
NlaIV GGNNCC 2 cut(s) 251, 630
NmeAIII GCCGAG 3 cut(s) 674, 1043, 1073
NmuCI GTSAC 1 cut(s) 294
NspI RCATGY 1 cut(s) 951
NspV TTCGAA 1 cut(s) 607
PagI TCATGA 1 cut(s) 564
PaqCI CACCTGC 1 cut(s) 912
PciI ACATGT 1 cut(s) 947
PctI GAATGC 1 cut(s) 1010
PdiI GCCGGC 1 cut(s) 717
PfeI GAWTC 3 cut(s) 103, 226, 488
PkrI GCNGC 7 cut(s) 688, 733, 747, 803, 816, 836, 968
Ple19I CGATCG 2 cut(s) 868, 1209
PleI GAGTC 2 cut(s) 719, 1105
PpsI GAGTC 2 cut(s) 719, 1105
PscI ACATGT 1 cut(s) 947
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 251, 630
PspPI GGNCC 2 cut(s) 1199, 1229
PsuI RGATCY 3 cut(s) 431, 534, 628
PvuI CGATCG 2 cut(s) 868, 1209
RgaI GCGATCGC 1 cut(s) 868
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 2 cut(s) 161, 623
SaqAI TTAA 3 cut(s) 465, 584, 984
SatI GCNGC 7 cut(s) 687, 732, 746, 802, 815, 835, 967
Sau96I GGNCC 2 cut(s) 1199, 1229
SchI GAGTC 2 cut(s) 719, 1106
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 958, 1129
SfaAI GCGATCGC 1 cut(s) 868
SfaNI GCATC 4 cut(s) 41, 223, 322, 1014
SfcI CTRYAG 1 cut(s) 925
SfuI TTCGAA 1 cut(s) 607
SgfI GCGATCGC 1 cut(s) 868
SinI GGWCC 1 cut(s) 1199
SmiMI CAYNNNNRTG 2 cut(s) 161, 623
SmlI CTYRAG 3 cut(s) 350, 1042, 1161
SmoI CTYRAG 3 cut(s) 350, 1042, 1161
SpeI ACTAGT 1 cut(s) 121
Sse9I AATT 8 cut(s) 55, 303, 406, 593, 708, 889, 979, 1173
SspI AATATT 3 cut(s) 262, 382, 400
SspMI CTAG 2 cut(s) 122, 284
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 5 cut(s) 254, 343, 604, 997, 1131
TaqI TCGA 2 cut(s) 607, 659
TasI AATT 8 cut(s) 55, 303, 406, 593, 708, 889, 979, 1173
TatI WGTACW 1 cut(s) 422
TfiI GAWTC 3 cut(s) 103, 226, 488
Tru1I TTAA 3 cut(s) 465, 584, 984
Tru9I TTAA 3 cut(s) 465, 584, 984
TscAI CASTG 1 cut(s) 329
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 7 cut(s) 686, 731, 745, 801, 814, 834, 966
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 7 cut(s) 426, 581, 773, 801, 857, 1089, 1200
TspRI CASTG 1 cut(s) 329
VneI GTGCAC 1 cut(s) 1125
VpaK11BI GGWCC 1 cut(s) 1199
XagI CCTNNNNNAGG 1 cut(s) 795
XapI RAATTY 3 cut(s) 55, 406, 593
XceI RCATGY 1 cut(s) 951
XspI CTAG 2 cut(s) 122, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.