RchiOBHm_Chr1g0383421
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000106
Physical Location & Seq
Reverse (-)
67749081 .. 67750130
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60636

Sequence Viewer

Length: 930 bp
ATGGTGAGGAGTATGATGTGCACATCAGGTTTGCCGAGATTCTTATGGGGAGAGGCTCTTAAAACTGCAAATTACATTACAAATAGGACTCCAAGCAAAGCTGTGGCGAAGACTTCTTTTGAGCTGTGGAAAAACAGAAAACCAAGTGTGCATCATGTGCATGTTTGGGGTTGTAAGGCTGAAGCACGACCATATAACCCTCAAGAAGGAAAATTAGATCCGAAGACAATCTCAGCCCACTTTATTGGATATCCAGAAAATTCTAGAGGTTACAGGTTCTACTGTCCTTCTCACACCACAAGAATAATTGAGACCAACAAGGCTATTTTCCTTGATGAAATCAATTATTCTCACTCATATGAAAATCTTGAACTTGAGTTTCAAGAGTTACCTGAAGATGAGTCTGAAAATATTGGCATCCCCATCACTTTTGAAACTGCAGCTGGAGATATTGAACAGCCTCAACTTGAGGTTGTTGCAGAAAATCAAAATAACAATTTTGAAAATGTAGTGGGTGAACTGGATGAAGTAGAGCAAGAACCCGAGCCTCAAAACTTGCAAGAAGCACAAGTTGATCCTGAAGCAGCCCCTCAACAACTTAGAAGATCTGGAAGAATTAGAAAACCTGCTATTAACCCACAGGAGTATATGGTGTACTTGCAGGAAGCTGAATTTGATTGGGGAGAAGATAATGATCCGGAAAACTTTAGTCAAGCCATTAATAGTGATCAAAGCTTAAAGTGGACAGAGGCAATGGAAGCAGAGCTGCAGTCCATGTATGATAACAATGTTTGGGAGTTGGTTGAGCCTACTGGGAGTCATAAACCGATTGGTTGCAAATGGGTTTTCAAAACTAAAAGGTGTGCTGATGGGTCAGTGGAGAGATTTAAAGCTAGGCTAGTGGCGAAAGGGTTCACACAACAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 Retrotrans_gag zf-CCHC

Protein Analysis

309

Amino Acids

35.51

Weight (kDa)

4.91

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 60 - 119 8.6e-13 Retroviral polymerase SH3-like domain
RVT_2 PF07727 262 - 308 1.3e-09 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 634
AccIII TCCGGA 1 cut(s) 697
AclWI GGATC 3 cut(s) 212, 569, 689
AcsI RAATTY 2 cut(s) 259, 671
AcuI CTGAAG 3 cut(s) 201, 414, 600
AfaI GTAC 1 cut(s) 656
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 6 cut(s) 371, 383, 434, 455, 503, 850
AluBI AGCT 7 cut(s) 101, 124, 443, 668, 735, 766, 893
AluI AGCT 7 cut(s) 101, 124, 443, 668, 735, 766, 893
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 305
Alw44I GTGCAC 1 cut(s) 19
AlwI GGATC 3 cut(s) 212, 569, 689
Ama87I CYCGRG 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 697
ApaLI GTGCAC 1 cut(s) 19
ApeKI GCWGC 3 cut(s) 440, 584, 766
ApoI RAATTY 2 cut(s) 259, 671
AseI ATTAAT 1 cut(s) 720
Asp700I GAANNNNTTC 1 cut(s) 911
AsuHPI GGTGA 2 cut(s) 16, 527
AvaI CYCGRG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 116, 230
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 452, 596, 753
BccI CCATC 2 cut(s) 431, 863
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 3 cut(s) 264, 894, 899
BfmI CTRYAG 2 cut(s) 438, 767
BfuAI ACCTGC 1 cut(s) 634
BglII AGATCT 1 cut(s) 605
BisI GCNGC 3 cut(s) 441, 585, 767
BlsI GCNGC 3 cut(s) 442, 586, 768
BmeT110I CYCGRG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 2 cut(s) 160, 426
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 2 cut(s) 116, 230
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 3 cut(s) 186, 395, 488
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 525, 817
Bse3DI GCAATG 1 cut(s) 759
Bse8I GATNNNNATC 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 697
BseGI GGATG 2 cut(s) 417, 529
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 2 cut(s) 525, 817
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 3 cut(s) 452, 596, 753
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 5 cut(s) 217, 574, 605, 694, 727
BspCNI CTCAG 1 cut(s) 245
BspEI TCCGGA 1 cut(s) 697
BspMAI CTGCAG 2 cut(s) 442, 771
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 3 cut(s) 212, 569, 689
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 759
BsrI ACTGG 2 cut(s) 525, 817
BssMI GATC 5 cut(s) 217, 574, 605, 694, 727
Bst4CI ACNGT 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 232, 599
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 417, 529
BstKTI GATC 5 cut(s) 220, 577, 608, 697, 730
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 5 cut(s) 217, 574, 605, 694, 727
BstMWI GCNNNNNNNGC 2 cut(s) 157, 758
BstNSI RCATGY 1 cut(s) 164
BstSFI CTRYAG 2 cut(s) 438, 767
BstSLI GKGCMC 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 452, 596, 753
BstV2I GAAGAC 2 cut(s) 116, 230
BstX2I RGATCY 2 cut(s) 217, 605
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 2 cut(s) 217, 605
BtsCI GGATG 2 cut(s) 417, 529
BtsIMutI CAGTG 1 cut(s) 882
BveI ACCTGC 1 cut(s) 634
Csp6I GTAC 1 cut(s) 655
CviAII CATG 3 cut(s) 155, 161, 775
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 2 cut(s) 232, 599
DpnI GATC 5 cut(s) 219, 576, 607, 696, 729
DpnII GATC 5 cut(s) 217, 574, 605, 694, 727
DraI TTTAAA 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 305
Eco32I GATATC 1 cut(s) 251
Eco57I CTGAAG 3 cut(s) 201, 414, 600
Eco88I CYCGRG 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 251
FaeI CATG 3 cut(s) 158, 164, 778
FatI CATG 3 cut(s) 154, 160, 774
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 441, 585, 767
FokI GGATG 2 cut(s) 404, 536
Fsp4HI GCNGC 3 cut(s) 441, 585, 767
FspBI CTAG 3 cut(s) 264, 894, 899
GluI GCNGC 3 cut(s) 441, 585, 767
GsuI CTGGAG 1 cut(s) 465
HapII CCGG 1 cut(s) 698
Hin1II CATG 3 cut(s) 158, 164, 778
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 4 cut(s) 39, 88, 401, 817
HpaII CCGG 1 cut(s) 698
HphI GGTGA 2 cut(s) 16, 527
Hpy166II GTNNAC 5 cut(s) 21, 518, 655, 744, 915
Hpy188I TCNGA 2 cut(s) 222, 406
Hpy188III TCNNGA 8 cut(s) 203, 254, 264, 368, 383, 578, 609, 698
Hpy8I GTNNAC 5 cut(s) 21, 518, 655, 744, 915
HpyAV CCTTC 2 cut(s) 200, 297
HpyCH4III ACNGT 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 758
HpyF3I CTNAG 2 cut(s) 232, 599
Hsp92II CATG 3 cut(s) 158, 164, 778
Kpn2I TCCGGA 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 5 cut(s) 217, 574, 605, 694, 727
Lsp1109I GCAGC 3 cut(s) 452, 596, 753
LweI GCATC 2 cut(s) 160, 426
MaeI CTAG 3 cut(s) 264, 894, 899
MaeIII GTNAC 2 cut(s) 269, 387
MalI GATC 5 cut(s) 219, 576, 607, 696, 729
MboI GATC 5 cut(s) 217, 574, 605, 694, 727
MboII GAAGA 6 cut(s) 121, 235, 407, 615, 624, 698
MflI RGATCY 2 cut(s) 217, 605
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 8 cut(s) 70, 212, 259, 306, 343, 496, 615, 671
MlyI GAGTC 3 cut(s) 82, 410, 826
MnlI CCTC 8 cut(s) 46, 210, 260, 463, 471, 558, 600, 742
MroI TCCGGA 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 911
MseI TTAA 5 cut(s) 60, 633, 720, 737, 888
MslI CAYNNNNRTG 2 cut(s) 159, 357
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 1 cut(s) 698
MwoI GCNNNNNNNGC 2 cut(s) 157, 758
NdeI CATATG 1 cut(s) 358
NdeII GATC 5 cut(s) 217, 574, 605, 694, 727
NlaIII CATG 3 cut(s) 158, 164, 778
NmeAIII GCCGAG 1 cut(s) 60
NspI RCATGY 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 3 cut(s) 442, 586, 768
PleI GAGTC 3 cut(s) 82, 409, 825
PpsI GAGTC 3 cut(s) 82, 409, 825
PshBI ATTAAT 1 cut(s) 720
PstI CTGCAG 2 cut(s) 442, 771
PsuI RGATCY 2 cut(s) 217, 605
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
RseI CAYNNNNRTG 2 cut(s) 159, 357
SaqAI TTAA 5 cut(s) 60, 633, 720, 737, 888
SatI GCNGC 3 cut(s) 441, 585, 767
Sau3AI GATC 5 cut(s) 217, 574, 605, 694, 727
SchI GAGTC 3 cut(s) 82, 410, 826
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 2 cut(s) 160, 426
SfcI CTRYAG 2 cut(s) 438, 767
SmiMI CAYNNNNRTG 2 cut(s) 159, 357
SmlI CTYRAG 3 cut(s) 201, 374, 467
SmoI CTYRAG 3 cut(s) 201, 374, 467
Sse9I AATT 8 cut(s) 70, 212, 259, 306, 343, 496, 615, 671
SspI AATATT 1 cut(s) 412
SspMI CTAG 3 cut(s) 264, 894, 899
TaaI ACNGT 1 cut(s) 284
TasI AATT 8 cut(s) 70, 212, 259, 306, 343, 496, 615, 671
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 5 cut(s) 60, 633, 720, 737, 888
Tru9I TTAA 5 cut(s) 60, 633, 720, 737, 888
TscAI CASTG 1 cut(s) 882
TseI GCWGC 3 cut(s) 440, 584, 766
TspDTI ATGAA 3 cut(s) 351, 375, 540
TspRI CASTG 1 cut(s) 882
VneI GTGCAC 1 cut(s) 19
VspI ATTAAT 1 cut(s) 720
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 2 cut(s) 259, 671
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 3 cut(s) 264, 894, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.