FvH4_6g23581
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000106
Physical Location & Seq
Forward (+)
17645306 .. 17646460
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23581.t1

Sequence Viewer

Length: 918 bp
ATGGGTCAAAAGGCTTACAAATTGCATAATATTGAGACCAAAGGAATCTTTACAAATCGGGATGTGGTTTTTCTTGAAGCTACTTTTCATCATTCAACACATACTACCAAACCCGTTGAGCCCACTCCACTTCCATTCTTACATGACCTACCCACATCAACGTTATCATCTTCTTCTCCTTCTTCTCCAAATGGCGTCCTTCACCCAGCCCCTGTCGCTGGTGTTCCTAGCACTGCAAGAGACGACACCGATATTCCTTCTAGCGAAAACGCCTGCATCTCTACCAGCGACAACGCTGACCCGTCGCTTTCTCCCACCAATCACCCAGTTTTTCTCCAATCTCCTCCACCTAGCCCGCTGGCAAATCAATCGGGTTCTCCCCATTTTGCTCCGCCAAGTCCACTGAGTTTGCCTGCAATTCCAATCGAAACTCAGTCTGAAAATGCTCTCCTTGATTCCAATACTCTTCTCATTACACCTGTTCAGCCTCTTCGCCGTTCTCAGCACATTCGGGAAGCCTACGTCCGTCTCAAGGACTACGTTTCTCGGGATGAGGAATTGACATCTTATGACATTGCTGCAGCTGATCCAAAATGGCAGGAAGCCATGGATTCTGAGCTTCAAGCTGTCGTTGATAATCAGACATGGAGTCTAGTTCCTTTACCCCTTGGAAAACGGCCTATCAATTGTAAATGGGTATATCGAATTAAGCGCAGGGCTGATAGTTTAGTGGAGCGCTATCAGGCCCGACTTGTTGCTCGGGGCTTCACTCAGACTGTAGATGTTAATAATGCTTTCCTGAATGGTGATTTATTGGAGGAAATTTACATGTCCCCTCCTCCTGGTCTTCGGCGACAGGGGGAGAACCTTGTGTGTCGCCTTCACAAGTCGTTGTATGGACTTAAACAAGCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

306

Amino Acids

33.65

Weight (kDa)

6.2

Isoelectric Point (pI)

71.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 213 - 259 2.7e-09 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 260 - 304 5.6e-12 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 356, 392
AclI AACGTT 1 cut(s) 161
AclWI GGATC 1 cut(s) 581
AcsI RAATTY 1 cut(s) 822
AcyI GRCGYC 1 cut(s) 195
AfeI AGCGCT 1 cut(s) 737
AfiI CCNNNNNNNGG 3 cut(s) 218, 532, 842
AflIII ACRYGT 1 cut(s) 828
AgsI TTSAA 3 cut(s) 77, 96, 623
AhdI GACNNNNNGTC 1 cut(s) 648
AjnI CCWGG 1 cut(s) 841
AluBI AGCT 4 cut(s) 80, 584, 619, 626
AluI AGCT 4 cut(s) 80, 584, 619, 626
Alw26I GTCTC 3 cut(s) 29, 234, 533
AlwI GGATC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 2 cut(s) 546, 759
Aor51HI AGCGCT 1 cut(s) 737
AoxI GGCC 2 cut(s) 677, 744
ApeKI GCWGC 2 cut(s) 578, 581
ApoI RAATTY 1 cut(s) 822
AspLEI GCGC 2 cut(s) 714, 738
AspS9I GGNCC 1 cut(s) 745
AsuHPI GGTGA 3 cut(s) 194, 314, 818
AvaI CYCGRG 2 cut(s) 546, 759
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 839
BbvI GCAGC 2 cut(s) 565, 593
BceAI ACGGC 2 cut(s) 480, 692
BcgI CGANNNNNNTGC 2 cut(s) 351, 385
BciT130I CCWGG 1 cut(s) 843
BcoDI GTCTC 3 cut(s) 29, 234, 533
BfaI CTAG 4 cut(s) 228, 261, 351, 653
BfmI CTRYAG 2 cut(s) 579, 777
BfoI RGCGCY 1 cut(s) 739
BisI GCNGC 2 cut(s) 579, 582
BlsI GCNGC 2 cut(s) 580, 583
Bme1390I CCNGG 1 cut(s) 843
BmeRI GACNNNNNGTC 1 cut(s) 648
BmeT110I CYCGRG 2 cut(s) 546, 759
BmgT120I GGNCC 1 cut(s) 745
BmrFI CCNGG 1 cut(s) 843
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 839
BpuEI CTTGAG 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 606, 667
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 532, 842
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 1 cut(s) 843
BseDI CCNNGG 2 cut(s) 606, 667
BseGI GGATG 2 cut(s) 67, 556
BseLI CCNNNNNNNGG 3 cut(s) 218, 532, 842
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 5 cut(s) 395, 446, 515, 606, 785
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 333, 828
BseXI GCAGC 2 cut(s) 565, 593
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 679, 746
BsiHKCI CYCGRG 2 cut(s) 546, 759
BslFI GGGAC 1 cut(s) 817
BslI CCNNNNNNNGG 3 cut(s) 218, 532, 842
BsmAI GTCTC 3 cut(s) 29, 234, 533
BsmBI CGTCTC 2 cut(s) 234, 533
BsmFI GGGAC 1 cut(s) 817
BsnI GGCC 2 cut(s) 679, 746
Bso31I GGTCTC 1 cut(s) 29
BsoBI CYCGRG 2 cut(s) 546, 759
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 586
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 2 cut(s) 356, 392
BspANI GGCC 2 cut(s) 679, 746
BspCNI CTCAG 5 cut(s) 396, 445, 514, 607, 784
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 606, 667
BssMI GATC 1 cut(s) 586
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 606, 667
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 778
Bst6I CTCTTC 2 cut(s) 471, 495
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 4 cut(s) 274, 356, 360, 414
BstDEI CTNAG 5 cut(s) 404, 432, 501, 615, 771
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 2 cut(s) 67, 556
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 2 cut(s) 714, 738
BstKTI GATC 1 cut(s) 589
BstMAI GTCTC 3 cut(s) 29, 234, 533
BstMBI GATC 1 cut(s) 586
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 843
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 1 cut(s) 841
BstSFI CTRYAG 2 cut(s) 579, 777
BstV1I GCAGC 2 cut(s) 565, 593
BstV2I GAAGAC 1 cut(s) 839
BsuRI GGCC 2 cut(s) 679, 746
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 2 cut(s) 67, 556
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 231, 401
Cac8I GCNNGC 4 cut(s) 274, 356, 360, 414
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 2 cut(s) 714, 738
Cfr13I GGNCC 1 cut(s) 745
CseI GACGC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 4 cut(s) 143, 607, 645, 829
DdeI CTNAG 5 cut(s) 404, 432, 501, 615, 771
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
DriI GACNNNNNGTC 1 cut(s) 648
Eam1104I CTCTTC 2 cut(s) 471, 495
Eam1105I GACNNNNNGTC 1 cut(s) 648
EarI CTCTTC 2 cut(s) 471, 495
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 2 cut(s) 606, 667
Eco24I GRGCYC 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 29
Eco47III AGCGCT 1 cut(s) 737
Eco88I CYCGRG 2 cut(s) 546, 759
EcoRII CCWGG 1 cut(s) 841
EcoT14I CCWWGG 2 cut(s) 606, 667
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 606, 667
Esp3I CGTCTC 2 cut(s) 234, 533
FaeI CATG 4 cut(s) 146, 610, 648, 832
FaiI YATR 9 cut(s) 27, 102, 144, 570, 608, 646, 700, 830, 897
FaqI GGGAC 1 cut(s) 817
FatI CATG 4 cut(s) 142, 606, 644, 828
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 579, 582
FokI GGATG 2 cut(s) 74, 563
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 2 cut(s) 579, 582
FspBI CTAG 4 cut(s) 228, 261, 351, 653
GlaI GCGC 2 cut(s) 713, 737
GluI GCNGC 2 cut(s) 579, 582
GsaI CCCAGC 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 2 cut(s) 679, 746
HgaI GACGC 1 cut(s) 184
HhaI GCGC 2 cut(s) 714, 738
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 4 cut(s) 146, 610, 648, 832
Hin6I GCGC 2 cut(s) 712, 736
HinP1I GCGC 2 cut(s) 712, 736
HinfI GANTC 4 cut(s) 45, 455, 611, 649
HphI GGTGA 3 cut(s) 194, 314, 818
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 4 cut(s) 439, 616, 642, 774
Hpy188III TCNNGA 6 cut(s) 59, 74, 512, 548, 799, 915
Hpy8I GTNNAC 1 cut(s) 401
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 4 cut(s) 189, 209, 267, 890
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4IV ACGT 3 cut(s) 161, 522, 540
HpyCH4V TGCA 5 cut(s) 25, 236, 276, 416, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 5 cut(s) 404, 432, 501, 615, 771
HpySE526I ACGT 3 cut(s) 161, 522, 540
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 4 cut(s) 146, 610, 648, 832
HspAI GCGC 2 cut(s) 712, 736
Kzo9I GATC 1 cut(s) 586
LmnI GCTCC 2 cut(s) 394, 733
Lsp1109I GCAGC 2 cut(s) 565, 593
LweI GCATC 1 cut(s) 285
MaeI CTAG 4 cut(s) 228, 261, 351, 653
MaeII ACGT 3 cut(s) 161, 522, 540
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MboII GAAGA 6 cut(s) 162, 165, 174, 458, 482, 839
MfeI CAATTG 1 cut(s) 685
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 6 cut(s) 20, 417, 557, 685, 705, 822
MlyI GAGTC 1 cut(s) 658
MnlI CCTC 6 cut(s) 354, 498, 547, 811, 846, 849
MseI TTAA 3 cut(s) 708, 786, 903
MspA1I CMGCKG 2 cut(s) 358, 584
MspR9I CCNGG 1 cut(s) 843
MunI CAATTG 1 cut(s) 685
MvaI CCWGG 1 cut(s) 843
MwoI GCNNNNNNNGC 1 cut(s) 215
NcoI CCATGG 1 cut(s) 606
NdeII GATC 1 cut(s) 586
NlaIII CATG 4 cut(s) 146, 610, 648, 832
NspI RCATGY 1 cut(s) 832
PciI ACATGT 1 cut(s) 828
PfeI GAWTC 3 cut(s) 45, 455, 611
PkrI GCNGC 2 cut(s) 580, 583
PleI GAGTC 1 cut(s) 657
PpsI GAGTC 1 cut(s) 657
PscI ACATGT 1 cut(s) 828
Psp1406I AACGTT 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 841
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 841
PspPI GGNCC 1 cut(s) 745
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 584
SaqAI TTAA 3 cut(s) 708, 786, 903
SatI GCNGC 2 cut(s) 579, 582
Sau3AI GATC 1 cut(s) 586
Sau96I GGNCC 1 cut(s) 745
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 1 cut(s) 843
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 579, 777
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 6 cut(s) 20, 417, 557, 685, 705, 822
SsiI CCGC 2 cut(s) 356, 392
SspI AATATT 1 cut(s) 31
SspMI CTAG 4 cut(s) 228, 261, 351, 653
StyD4I CCNGG 1 cut(s) 841
StyI CCWWGG 2 cut(s) 606, 667
TaaI ACNGT 1 cut(s) 778
TaiI ACGT 3 cut(s) 164, 525, 543
TaqI TCGA 2 cut(s) 426, 703
TasI AATT 6 cut(s) 20, 417, 557, 685, 705, 822
TfiI GAWTC 3 cut(s) 45, 455, 611
Tru1I TTAA 3 cut(s) 708, 786, 903
Tru9I TTAA 3 cut(s) 708, 786, 903
TscAI CASTG 2 cut(s) 238, 408
TseI GCWGC 2 cut(s) 578, 581
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 2 cut(s) 238, 408
XapI RAATTY 1 cut(s) 822
XceI RCATGY 1 cut(s) 832
XspI CTAG 4 cut(s) 228, 261, 351, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.