GAG-pre-integrase domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 266 |
| AciI | CCGC | 1 cut(s) | 287 |
| AcsI | RAATTY | 3 cut(s) | 125, 238, 262 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 266 |
| AgsI | TTSAA | 2 cut(s) | 122, 133 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 236, 268 |
| AleI | CACNNNNGTG | 1 cut(s) | 383 |
| AluBI | AGCT | 1 cut(s) | 247 |
| AluI | AGCT | 1 cut(s) | 247 |
| AoxI | GGCC | 1 cut(s) | 230 |
| ApoI | RAATTY | 3 cut(s) | 125, 238, 262 |
| AseI | ATTAAT | 1 cut(s) | 302 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 278 |
| AspS9I | GGNCC | 1 cut(s) | 230 |
| AsuC2I | CCSGG | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 2 cut(s) | 276, 370 |
| BcnI | CCSGG | 1 cut(s) | 229 |
| Bme1390I | CCNGG | 1 cut(s) | 229 |
| BmgT120I | GGNCC | 1 cut(s) | 230 |
| BmrFI | CCNGG | 1 cut(s) | 229 |
| BmsI | GCATC | 2 cut(s) | 62, 214 |
| BpuMI | CCSGG | 1 cut(s) | 229 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 266 |
| BseGI | GGATG | 1 cut(s) | 53 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BshFI | GGCC | 1 cut(s) | 232 |
| BsiSI | CCGG | 1 cut(s) | 228 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BsmI | GAATGC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 232 |
| BspACI | CCGC | 1 cut(s) | 287 |
| BspANI | GGCC | 1 cut(s) | 232 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstC8I | GCNNGC | 2 cut(s) | 146, 203 |
| BstDEI | CTNAG | 1 cut(s) | 105 |
| BstF5I | GGATG | 1 cut(s) | 53 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 154 |
| BstSCI | CCNGG | 1 cut(s) | 227 |
| BsuRI | GGCC | 1 cut(s) | 232 |
| BtsCI | GGATG | 1 cut(s) | 53 |
| BtsI | GCAGTG | 1 cut(s) | 97 |
| BtsIMutI | CAGTG | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 2 cut(s) | 146, 203 |
| Cfr13I | GGNCC | 1 cut(s) | 230 |
| CseI | GACGC | 1 cut(s) | 337 |
| CviAII | CATG | 2 cut(s) | 14, 295 |
| CviJI | RGCY | 3 cut(s) | 104, 232, 247 |
| CviKI_1 | RGCY | 3 cut(s) | 104, 232, 247 |
| DdeI | CTNAG | 1 cut(s) | 105 |
| DraI | TTTAAA | 2 cut(s) | 237, 333 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| FaeI | CATG | 2 cut(s) | 17, 298 |
| FaiI | YATR | 5 cut(s) | 9, 15, 171, 213, 296 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 236, 268 |
| FatI | CATG | 2 cut(s) | 13, 294 |
| FokI | GGATG | 1 cut(s) | 40 |
| HaeIII | GGCC | 1 cut(s) | 232 |
| HapII | CCGG | 1 cut(s) | 228 |
| HgaI | GACGC | 1 cut(s) | 337 |
| Hin1II | CATG | 2 cut(s) | 17, 298 |
| HpaII | CCGG | 1 cut(s) | 228 |
| HphI | GGTGA | 2 cut(s) | 276, 370 |
| HpyAV | CCTTC | 1 cut(s) | 377 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 53 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 154 |
| HpyF3I | CTNAG | 1 cut(s) | 105 |
| Hsp92II | CATG | 2 cut(s) | 17, 298 |
| LpnPI | CCDG | 1 cut(s) | 241 |
| LweI | GCATC | 2 cut(s) | 62, 214 |
| MboII | GAAGA | 2 cut(s) | 110, 244 |
| MluCI | AATT | 4 cut(s) | 62, 125, 238, 262 |
| MnlI | CCTC | 4 cut(s) | 186, 227, 374, 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 278 |
| MseI | TTAA | 3 cut(s) | 236, 302, 332 |
| MslI | CAYNNNNRTG | 2 cut(s) | 12, 383 |
| MspA1I | CMGCKG | 1 cut(s) | 289 |
| MspI | CCGG | 1 cut(s) | 228 |
| MspR9I | CCNGG | 1 cut(s) | 229 |
| Mva1269I | GAATGC | 1 cut(s) | 157 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 154 |
| NciI | CCSGG | 1 cut(s) | 229 |
| NlaIII | CATG | 2 cut(s) | 17, 298 |
| OliI | CACNNNNGTG | 1 cut(s) | 383 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 205 |
| PctI | GAATGC | 1 cut(s) | 157 |
| PdmI | GAANNNNTTC | 1 cut(s) | 278 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 266 |
| PshBI | ATTAAT | 1 cut(s) | 302 |
| PspPI | GGNCC | 1 cut(s) | 230 |
| RseI | CAYNNNNRTG | 2 cut(s) | 12, 383 |
| SaqAI | TTAA | 3 cut(s) | 236, 302, 332 |
| Sau96I | GGNCC | 1 cut(s) | 230 |
| ScrFI | CCNGG | 1 cut(s) | 229 |
| SetI | ASST | 4 cut(s) | 249, 342, 366, 383 |
| SfaNI | GCATC | 2 cut(s) | 62, 214 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 12, 383 |
| Sse9I | AATT | 4 cut(s) | 62, 125, 238, 262 |
| SsiI | CCGC | 1 cut(s) | 287 |
| StyD4I | CCNGG | 1 cut(s) | 227 |
| TaqI | TCGA | 1 cut(s) | 178 |
| TasI | AATT | 4 cut(s) | 62, 125, 238, 262 |
| Tru1I | TTAA | 3 cut(s) | 236, 302, 332 |
| Tru9I | TTAA | 3 cut(s) | 236, 302, 332 |
| TscAI | CASTG | 1 cut(s) | 97 |
| TspDTI | ATGAA | 3 cut(s) | 30, 283, 364 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| TspRI | CASTG | 1 cut(s) | 97 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 266 |
| VspI | ATTAAT | 1 cut(s) | 302 |
| XapI | RAATTY | 3 cut(s) | 125, 238, 262 |
| XmnI | GAANNNNTTC | 1 cut(s) | 278 |