gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 76 | 4.8e-12 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 568, 617 |
| AclWI | GGATC | 1 cut(s) | 103 |
| AfaI | GTAC | 2 cut(s) | 189, 503 |
| AflII | CTTAAG | 1 cut(s) | 209 |
| AflIII | ACRYGT | 1 cut(s) | 596 |
| AgsI | TTSAA | 4 cut(s) | 266, 429, 438, 575 |
| AleI | CACNNNNGTG | 1 cut(s) | 468 |
| AluBI | AGCT | 2 cut(s) | 260, 282 |
| AluI | AGCT | 2 cut(s) | 260, 282 |
| Alw26I | GTCTC | 2 cut(s) | 2, 155 |
| AlwI | GGATC | 1 cut(s) | 103 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 259, 291 |
| AsuHPI | GGTGA | 2 cut(s) | 86, 482 |
| BccI | CCATC | 2 cut(s) | 193, 256 |
| BcoDI | GTCTC | 2 cut(s) | 2, 155 |
| BfaI | CTAG | 1 cut(s) | 165 |
| BfrI | CTTAAG | 1 cut(s) | 209 |
| BisI | GCNGC | 1 cut(s) | 617 |
| BlsI | GCNGC | 1 cut(s) | 618 |
| BmsI | GCATC | 1 cut(s) | 127 |
| Bse1I | ACTGG | 1 cut(s) | 356 |
| BseGI | GGATG | 1 cut(s) | 248 |
| BseNI | ACTGG | 1 cut(s) | 356 |
| BseRI | GAGGAG | 1 cut(s) | 173 |
| BslFI | GGGAC | 1 cut(s) | 217 |
| BsmAI | GTCTC | 2 cut(s) | 2, 155 |
| BsmFI | GGGAC | 1 cut(s) | 217 |
| Bsp1407I | TGTACA | 1 cut(s) | 501 |
| Bsp143I | GATC | 3 cut(s) | 108, 220, 388 |
| BspACI | CCGC | 2 cut(s) | 568, 617 |
| BspPI | GGATC | 1 cut(s) | 103 |
| BspTI | CTTAAG | 1 cut(s) | 209 |
| BsrGI | TGTACA | 1 cut(s) | 501 |
| BsrI | ACTGG | 1 cut(s) | 356 |
| BssMI | GATC | 3 cut(s) | 108, 220, 388 |
| Bst6I | CTCTTC | 1 cut(s) | 86 |
| BstAFI | CTTAAG | 1 cut(s) | 209 |
| BstAUI | TGTACA | 1 cut(s) | 501 |
| BstDEI | CTNAG | 1 cut(s) | 278 |
| BstF5I | GGATG | 1 cut(s) | 248 |
| BstKTI | GATC | 3 cut(s) | 111, 223, 391 |
| BstMAI | GTCTC | 2 cut(s) | 2, 155 |
| BstMBI | GATC | 3 cut(s) | 108, 220, 388 |
| BstNSI | RCATGY | 1 cut(s) | 600 |
| BstX2I | RGATCY | 1 cut(s) | 108 |
| BstYI | RGATCY | 1 cut(s) | 108 |
| BtsCI | GGATG | 1 cut(s) | 248 |
| BtsI | GCAGTG | 1 cut(s) | 591 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| Csp6I | GTAC | 2 cut(s) | 188, 502 |
| CviAII | CATG | 2 cut(s) | 525, 597 |
| CviJI | RGCY | 4 cut(s) | 215, 260, 282, 304 |
| CviKI_1 | RGCY | 4 cut(s) | 215, 260, 282, 304 |
| CviQI | GTAC | 2 cut(s) | 188, 502 |
| DdeI | CTNAG | 1 cut(s) | 278 |
| DpnI | GATC | 3 cut(s) | 110, 222, 390 |
| DpnII | GATC | 3 cut(s) | 108, 220, 388 |
| DraI | TTTAAA | 1 cut(s) | 484 |
| Eam1104I | CTCTTC | 1 cut(s) | 86 |
| EarI | CTCTTC | 1 cut(s) | 86 |
| FaeI | CATG | 2 cut(s) | 528, 600 |
| FaiI | YATR | 9 cut(s) | 30, 72, 116, 135, 143, 155, 173, 526, 598 |
| FaqI | GGGAC | 1 cut(s) | 217 |
| FatI | CATG | 2 cut(s) | 524, 596 |
| Fnu4HI | GCNGC | 1 cut(s) | 617 |
| FokI | GGATG | 1 cut(s) | 235 |
| Fsp4HI | GCNGC | 1 cut(s) | 617 |
| FspBI | CTAG | 1 cut(s) | 165 |
| GluI | GCNGC | 1 cut(s) | 617 |
| Hin1II | CATG | 2 cut(s) | 528, 600 |
| HincII | GTYRAC | 1 cut(s) | 609 |
| HindII | GTYRAC | 1 cut(s) | 609 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HinfI | GANTC | 3 cut(s) | 77, 118, 274 |
| HphI | GGTGA | 2 cut(s) | 86, 482 |
| Hpy166II | GTNNAC | 2 cut(s) | 502, 609 |
| Hpy188I | TCNGA | 3 cut(s) | 253, 322, 388 |
| Hpy188III | TCNNGA | 2 cut(s) | 103, 530 |
| Hpy8I | GTNNAC | 2 cut(s) | 502, 609 |
| HpyAV | CCTTC | 3 cut(s) | 371, 407, 527 |
| HpyCH4V | TGCA | 1 cut(s) | 463 |
| HpyF3I | CTNAG | 1 cut(s) | 278 |
| Hsp92II | CATG | 2 cut(s) | 528, 600 |
| Kzo9I | GATC | 3 cut(s) | 108, 220, 388 |
| LpnPI | CCDG | 2 cut(s) | 116, 337 |
| LweI | GCATC | 1 cut(s) | 127 |
| MaeI | CTAG | 1 cut(s) | 165 |
| MaeIII | GTNAC | 1 cut(s) | 510 |
| MalI | GATC | 3 cut(s) | 110, 222, 390 |
| MboI | GATC | 3 cut(s) | 108, 220, 388 |
| MboII | GAAGA | 6 cut(s) | 103, 118, 355, 358, 412, 587 |
| MflI | RGATCY | 1 cut(s) | 108 |
| MluCI | AATT | 4 cut(s) | 14, 316, 430, 506 |
| MlyI | GAGTC | 2 cut(s) | 112, 283 |
| MnlI | CCTC | 1 cut(s) | 151 |
| MseI | TTAA | 3 cut(s) | 210, 230, 483 |
| MslI | CAYNNNNRTG | 1 cut(s) | 468 |
| MspCI | CTTAAG | 1 cut(s) | 209 |
| NdeII | GATC | 3 cut(s) | 108, 220, 388 |
| NlaIII | CATG | 2 cut(s) | 528, 600 |
| NmuCI | GTSAC | 1 cut(s) | 510 |
| NspI | RCATGY | 1 cut(s) | 600 |
| OliI | CACNNNNGTG | 1 cut(s) | 468 |
| PciI | ACATGT | 1 cut(s) | 596 |
| PfeI | GAWTC | 1 cut(s) | 77 |
| PkrI | GCNGC | 1 cut(s) | 618 |
| PleI | GAGTC | 2 cut(s) | 112, 282 |
| PpsI | GAGTC | 2 cut(s) | 112, 282 |
| PscI | ACATGT | 1 cut(s) | 596 |
| PsuI | RGATCY | 1 cut(s) | 108 |
| RsaI | GTAC | 2 cut(s) | 189, 503 |
| RsaNI | GTAC | 2 cut(s) | 188, 502 |
| RseI | CAYNNNNRTG | 1 cut(s) | 468 |
| SaqAI | TTAA | 3 cut(s) | 210, 230, 483 |
| SatI | GCNGC | 1 cut(s) | 617 |
| Sau3AI | GATC | 3 cut(s) | 108, 220, 388 |
| SchI | GAGTC | 2 cut(s) | 112, 283 |
| SetI | ASST | 5 cut(s) | 71, 230, 262, 284, 614 |
| SfaNI | GCATC | 1 cut(s) | 127 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 468 |
| SmlI | CTYRAG | 1 cut(s) | 209 |
| SmoI | CTYRAG | 1 cut(s) | 209 |
| Sse9I | AATT | 4 cut(s) | 14, 316, 430, 506 |
| SsiI | CCGC | 2 cut(s) | 568, 617 |
| SspI | AATATT | 1 cut(s) | 476 |
| SspMI | CTAG | 1 cut(s) | 165 |
| TasI | AATT | 4 cut(s) | 14, 316, 430, 506 |
| TatI | WGTACW | 2 cut(s) | 187, 501 |
| TauI | GCSGC | 1 cut(s) | 619 |
| TfiI | GAWTC | 1 cut(s) | 77 |
| Tru1I | TTAA | 3 cut(s) | 210, 230, 483 |
| Tru9I | TTAA | 3 cut(s) | 210, 230, 483 |
| TscAI | CASTG | 1 cut(s) | 591 |
| TseFI | GTSAC | 1 cut(s) | 510 |
| Tsp45I | GTSAC | 1 cut(s) | 510 |
| TspDTI | ATGAA | 5 cut(s) | 17, 77, 258, 356, 426 |
| TspRI | CASTG | 1 cut(s) | 591 |
| Vha464I | CTTAAG | 1 cut(s) | 209 |
| XceI | RCATGY | 1 cut(s) | 600 |
| XspI | CTAG | 1 cut(s) | 165 |