pycom09g03600

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
2663025 .. 2664248
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03600.3

Sequence Viewer

Length: 681 bp
ATGTCTATAGTGAAAACGTACATTATACATATGGAGAATATGCTTCTCACTCTCAGGAATGCAAGGAAAAAGCTCATTGCACGTGTTCGAATGTCAAAGAATCGAATGTTCCGGTTGAATTTGAACACAAAGATTGGAAGTTGCAACATCGGTGTGCTGGAAGATGAGTCATTGAAATGGCATCTTCGGTTTGGCCAACTTCATTTCAATCGCCTAAAGTTGTTGTCAAGTGGAGGAATGACAGCAAAGACACCACTGCAGTTGGTGCACACAGATATATGTGGTCCATTGGATCCCATGTCTTATGGAGAAGTTATAGCTTGTTCTATTTATTTGTTGAATCGATTTCCAACAAAGAGTGTCAAGAGGATGACACCAAAAGAAGCTTGGAGTGGATACAAGTCGAATGTTTCACACGTAAGAGTTTTTGGGTGTATTGCATATGCTCAAGTTCCAAAAGCCAAGCTCAATGATCGAGGTGAAAAGTGTGTGTTTATGGGCTATAGTGAAGAGTCCAAGGCATACAAGCTCCACGACCCACTAACTGGCAAACTAGTGGTTAGTAGAGATGTCATCTTTAGTGAGGAAGAGGCATGGAAGTGGAACAACAAAGAAGTCAATAAAGAGAAGATTGTTTCCACTAATTTTGAAGAACCAGAAGTTGTACCACCTGTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

227

Amino Acids

25.91

Weight (kDa)

9.51

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 545
AclWI GGATC 2 cut(s) 287, 300
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 118
AcvI CACGTG 1 cut(s) 83
AfaI GTAC 2 cut(s) 20, 666
AfiI CCNNNNNNNGG 1 cut(s) 545
AflIII ACRYGT 2 cut(s) 82, 415
AgsI TTSAA 6 cut(s) 118, 124, 175, 208, 340, 650
AhlI ACTAGT 1 cut(s) 553
AluBI AGCT 5 cut(s) 73, 320, 386, 466, 529
AluI AGCT 5 cut(s) 73, 320, 386, 466, 529
Alw21I GWGCWC 1 cut(s) 270
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 2 cut(s) 287, 300
AoxI GGCC 1 cut(s) 193
ApaLI GTGCAC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 491
AsuII TTCGAA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 195
BamHI GGATCC 1 cut(s) 292
BbrPI CACGTG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 270
BciVI GTATCC 1 cut(s) 389
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 3 cut(s) 6, 257, 502
BfuI GTATCC 1 cut(s) 389
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 343
BsaAI YACGTR 2 cut(s) 83, 418
BsaJI CCNNGG 1 cut(s) 516
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 270
BshFI GGCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 545
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 292, 472
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 66
BspDI ATCGAT 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 294
BspMAI CTGCAG 1 cut(s) 261
BspPI GGATC 2 cut(s) 287, 300
BspT104I TTCGAA 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 2 cut(s) 292, 472
BssT1I CCWWGG 1 cut(s) 516
Bst6I CTCTTC 2 cut(s) 504, 582
BstAPI GCANNNNNTGC 1 cut(s) 265
BstBAI YACGTR 2 cut(s) 83, 418
BstBI TTCGAA 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 2 cut(s) 295, 475
BstMBI GATC 2 cut(s) 292, 472
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstSFI CTRYAG 3 cut(s) 6, 257, 502
BstSLI GKGCMC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 343
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 343
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 284
ClaI ATCGAT 1 cut(s) 343
Csp6I GTAC 2 cut(s) 19, 665
CspCI CAANNNNNGTGG 4 cut(s) 243, 278, 628, 663
CviAII CATG 2 cut(s) 298, 594
CviJI RGCY 8 cut(s) 73, 195, 320, 386, 461, 466, 501, 529
CviKI_1 RGCY 8 cut(s) 73, 195, 320, 386, 461, 466, 501, 529
CviQI GTAC 2 cut(s) 19, 665
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 294, 474
DpnII GATC 2 cut(s) 292, 472
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 504, 582
EarI CTCTTC 2 cut(s) 504, 582
Eco130I CCWWGG 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 284
Eco72I CACGTG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 2 cut(s) 301, 597
FatI CATG 2 cut(s) 297, 593
FauNDI CATATG 2 cut(s) 30, 442
FokI GGATG 1 cut(s) 382
FspBI CTAG 1 cut(s) 554
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 112
Hin1II CATG 2 cut(s) 301, 597
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 4 cut(s) 100, 167, 340, 512
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 55, 364
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4IV ACGT 3 cut(s) 17, 82, 417
HpyCH4V TGCA 6 cut(s) 62, 80, 144, 259, 268, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 3 cut(s) 17, 82, 417
Hsp92II CATG 2 cut(s) 301, 597
Kzo9I GATC 2 cut(s) 292, 472
LmnI GCTCC 1 cut(s) 534
LpnPI CCDG 5 cut(s) 40, 125, 143, 531, 669
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 554
MaeII ACGT 3 cut(s) 17, 82, 417
MalI GATC 2 cut(s) 294, 474
MboI GATC 2 cut(s) 292, 472
MboII GAAGA 6 cut(s) 173, 176, 521, 599, 640, 662
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 2 cut(s) 118, 643
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 2 cut(s) 176, 521
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 5 cut(s) 227, 360, 470, 577, 583
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MslI CAYNNNNRTG 3 cut(s) 152, 175, 598
Msp20I TGGCCA 1 cut(s) 195
MspI CCGG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeI CATATG 2 cut(s) 30, 442
NdeII GATC 2 cut(s) 292, 472
NlaIII CATG 2 cut(s) 301, 597
NlaIV GGNNCC 1 cut(s) 294
NspV TTCGAA 1 cut(s) 88
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 100, 340
PflMI CCANNNNNTGG 1 cut(s) 545
PleI GAGTC 2 cut(s) 175, 520
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 2 cut(s) 175, 520
Ppu21I YACGTR 2 cut(s) 83, 418
PspCI CACGTG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 2 cut(s) 20, 666
RsaNI GTAC 2 cut(s) 19, 665
RseI CAYNNNNRTG 3 cut(s) 152, 175, 598
Sau3AI GATC 2 cut(s) 292, 472
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 2 cut(s) 176, 521
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 3 cut(s) 6, 257, 502
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 3 cut(s) 152, 175, 598
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 2 cut(s) 118, 643
SspMI CTAG 1 cut(s) 554
StyI CCWWGG 1 cut(s) 516
TaiI ACGT 3 cut(s) 20, 85, 420
TaqI TCGA 5 cut(s) 88, 103, 343, 404, 475
TasI AATT 2 cut(s) 118, 643
TfiI GAWTC 2 cut(s) 100, 340
TscAI CASTG 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 545
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.