Rw0G023390

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01079
OG0000106
Physical Location & Seq
Reverse (-)
329584 .. 331283
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023390.1

Sequence Viewer

Length: 1632 bp
ATGGTAGGTGACGAAGAAGAGAAGTCCCTTGATTCAACAAGCAAGGGCTCGGAGACTTCCAAAACCTCAGCACCATGGGAGAGTACAAACCACCCTCTTTTTCTCCATCACTCGGATCAACCGGGAGCTGTTCTTGTGCAGTCAATGACTATGGCACTCACAATCAAGAACAAGAAGGGCTTCATAGATGGAACCCTCACAAAACCAACACACAATCTTGATGAACAGAGGCAGTGGGAATGCTGGATTACTCTTGTTAAAACCTGGCTGCTTGGTGCGATGTCGAAGGAGATTTCAAGCAGCGTCATTCATTGTAGAGAACACTTTTCTCACACGAACACTGTCTCCTTGTTCCAAATAGAAAACGCCATCCATGATTGTGAGCAGGGTACCACTTCTGTCACGTCATTTTTCACAAAGCTCAAGGCCTTATGGGATGAAAAGGATGCATTGTGTAGTTTTCCTCCTTGCAGTTGTGAGGGTGCTCCTGAAGTTAAGGCCTACATTGAAACTCAGAAAACCATGAAGTTTTTTATGGGACTTAACGAGAGCTATGCGCAGACACAGAGCAATATTATTGGCATGGACCTTCTTCCTCCTTTGAACAAGGCCTATGCAGTAGTGTTACGGCATGAAAAACAGACAACAGTGTCTCATGTGAAGCCAACATCATCATCTGAGGCCTCGGCTTTCTCTGTTAAAAGGAATGCACATGATTTTCAACTGACAGAAGGACAGGCCAAGTTTTGCGAAAAGTGCAACATGACTAACCACAATACCAAGAACTGTAGAGCACACCTCAAGTGTACCTATTGTAATGGTAAGGGTCACACTTTTGAGTATTGCCATAGGCGGAAGAAGATCATGGGAGAAGGCCAAAGTAGTTCCAGAGCAAATCATGTAGGATTGATGAATGAGAGCAAAGAGGATGTGCCAACCTTTCCATTGTCACAAAGTGAATGCCAGCAAGTGATAGGGCTCTTAAGCAAACTCAAAACAGCCGCTACTAATACCAATGATGGGCTCCAGTTACTTGAGATGTTGAATTCAAAGCAGCCTTCTGCCAATTTCGTTGGTAACTTCCCTAACTATGAGAACTTGTCAGGTAAAGCTTTTGCCCTCTCTCAAGATCATAAATCTGTGACATCGATACTAGATAGTGGGGCTAGTGACCACATAGTTTGTAGCCATATGTTCCTTACATCCTTTCAACCCGTATTCAATCAAACAGTAAGGTTGCCTGATGGTACTACGTTGTCGGTTTCTCACATAGGGACCGTCCAATTTTCTACTCATTTTGTCCTTCACAATGTACTTTGTATCCCATTATTTCACCTCAATCTCATATCTATCAGCAAACTTGCTCTTGACTCTTTTTACATCACTATATTCATTAAACAAGTTTGTTTTATACAGGACCTTCGATCGGGGAGGATGATTGGGACGGGAGCTGAAAGTGAGGGACTATACTGCCTCAACATGCCCAGGAAAGGAACATACAATGTGGTAGAGACCAAGACACCTGACGTATGGCGTCAAAGACTCGGACACCCATCTAGTAGAGTCTCTTCGTTGTTTCCCTTTTTACAAATAAATCTTGCGATGCAAGTCATTGTTCCATTTGCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

543

Amino Acids

60.55

Weight (kDa)

7.85

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 48 - 70 5.5e-06 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 384 - 455 5.2e-14 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 649
Acc16I TGCGCA 1 cut(s) 558
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 389
AciI CCGC 2 cut(s) 853, 1002
AclWI GGATC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 1045
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 1 cut(s) 1534
AdeI CACNNNGTG 1 cut(s) 956
AfaI GTAC 5 cut(s) 85, 391, 808, 1249, 1314
AfiI CCNNNNNNNGG 4 cut(s) 112, 1020, 1426, 1490
AflII CTTAAG 1 cut(s) 982
AgsI TTSAA 9 cut(s) 36, 297, 509, 604, 722, 1045, 1050, 1211, 1222
AjiI CACGTC 1 cut(s) 405
AjnI CCWGG 2 cut(s) 263, 1484
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 5 cut(s) 128, 421, 552, 1112, 1451
AluI AGCT 5 cut(s) 128, 421, 552, 1112, 1451
Alw21I GWGCWC 2 cut(s) 487, 796
Alw26I GTCTC 5 cut(s) 47, 349, 657, 1505, 1570
AlwI GGATC 1 cut(s) 123
AoxI GGCC 6 cut(s) 426, 498, 609, 681, 738, 874
ApeKI GCWGC 3 cut(s) 268, 300, 1054
ApoI RAATTY 1 cut(s) 1045
Asp700I GAANNNNTTC 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 3 cut(s) 586, 1275, 1417
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 20, 1325
AvaII GGWCC 3 cut(s) 586, 1275, 1417
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 3 cut(s) 50, 981, 1026
BarI GAAGNNNNNNTAC 2 cut(s) 1552, 1584
Bbv12I GWGCWC 2 cut(s) 487, 796
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 255, 312, 1066
BccI CCATC 6 cut(s) 114, 182, 377, 1013, 1238, 1561
BceAI ACGGC 1 cut(s) 644
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 2 cut(s) 265, 1486
BciVI GTATCC 1 cut(s) 1331
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 5 cut(s) 47, 349, 657, 1505, 1570
BfaI CTAG 3 cut(s) 1154, 1167, 1557
BfmI CTRYAG 1 cut(s) 787
BfrI CTTAAG 1 cut(s) 982
BfuI GTATCC 1 cut(s) 1331
BisI GCNGC 4 cut(s) 269, 301, 1002, 1055
BlsI GCNGC 4 cut(s) 270, 302, 1003, 1056
Bme1390I CCNGG 3 cut(s) 123, 265, 1486
Bme18I GGWCC 3 cut(s) 586, 1275, 1417
BmgBI CACGTC 1 cut(s) 405
BmgT120I GGNCC 3 cut(s) 586, 1275, 1417
BmiI GGNNCC 4 cut(s) 193, 391, 1025, 1276
BmrFI CCNGG 3 cut(s) 123, 265, 1486
BmsI GCATC 2 cut(s) 436, 1593
BplI GAGNNNNNCTC 2 cut(s) 783, 815
BpmI CTGGAG 1 cut(s) 1010
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 4 cut(s) 407, 785, 1055, 1110
BpuMI CCSGG 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 1148
BsaHI GRCGYC 1 cut(s) 1534
BsaI GGTCTC 1 cut(s) 1505
BsaJI CCNNGG 3 cut(s) 74, 684, 1484
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 1020, 1426, 1490
Bse1I ACTGG 1 cut(s) 1027
BseBI CCWGG 2 cut(s) 265, 1486
BseCI ATCGAT 1 cut(s) 1148
BseDI CCNNGG 3 cut(s) 74, 684, 1484
BseGI GGATG 6 cut(s) 369, 442, 451, 934, 1202, 1440
BseLI CCNNNNNNNGG 4 cut(s) 112, 1020, 1426, 1490
BseMII CTCAG 3 cut(s) 81, 527, 669
BseNI ACTGG 1 cut(s) 1027
BseXI GCAGC 3 cut(s) 255, 312, 1066
BsgI GTGCAG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 1427
BshFI GGCC 6 cut(s) 428, 500, 611, 683, 740, 876
BshNI GGYRCC 1 cut(s) 389
BshVI ATCGAT 1 cut(s) 1148
BsiEI CGRYCG 1 cut(s) 1427
BsiHKAI GWGCWC 2 cut(s) 487, 796
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 5 cut(s) 10, 552, 1288, 1456, 1476
BslI CCNNNNNNNGG 4 cut(s) 112, 1020, 1426, 1490
BsmAI GTCTC 5 cut(s) 47, 349, 657, 1505, 1570
BsmFI GGGAC 5 cut(s) 10, 552, 1288, 1456, 1476
BsmI GAATGC 3 cut(s) 245, 712, 965
BsnI GGCC 6 cut(s) 428, 500, 611, 683, 740, 876
Bso31I GGTCTC 1 cut(s) 1505
Bsp1286I GDGCHC 5 cut(s) 50, 487, 796, 981, 1026
Bsp143I GATC 4 cut(s) 115, 861, 1129, 1424
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 2 cut(s) 853, 1002
BspANI GGCC 6 cut(s) 428, 500, 611, 683, 740, 876
BspCNI CTCAG 3 cut(s) 80, 526, 670
BspDI ATCGAT 1 cut(s) 1148
BspLI GGNNCC 4 cut(s) 193, 391, 1025, 1276
BspPI GGATC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 982
BspTNI GGTCTC 1 cut(s) 1505
BsrI ACTGG 1 cut(s) 1027
BssECI CCNNGG 3 cut(s) 74, 684, 1484
BssMI GATC 4 cut(s) 115, 861, 1129, 1424
BssNI GRCGYC 1 cut(s) 1534
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 265, 1486
Bst4CI ACNGT 5 cut(s) 343, 649, 788, 1231, 1279
Bst6I CTCTTC 2 cut(s) 12, 1573
BstACI GRCGYC 1 cut(s) 1534
BstAFI CTTAAG 1 cut(s) 982
BstC8I GCNNGC 1 cut(s) 965
BstDEI CTNAG 3 cut(s) 67, 513, 678
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 6 cut(s) 369, 442, 451, 934, 1202, 1440
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 4 cut(s) 118, 864, 1132, 1427
BstMAI GTCTC 5 cut(s) 47, 349, 657, 1505, 1570
BstMBI GATC 4 cut(s) 115, 861, 1129, 1424
BstMCI CGRYCG 1 cut(s) 1427
BstMWI GCNNNNNNNGC 1 cut(s) 756
BstNI CCWGG 2 cut(s) 265, 1486
BstNSI RCATGY 1 cut(s) 1483
BstSCI CCNGG 3 cut(s) 121, 263, 1484
BstSFI CTRYAG 1 cut(s) 787
BstV1I GCAGC 3 cut(s) 255, 312, 1066
Bsu15I ATCGAT 1 cut(s) 1148
BsuI GTATCC 1 cut(s) 1331
BsuRI GGCC 6 cut(s) 428, 500, 611, 683, 740, 876
BsuTUI ATCGAT 1 cut(s) 1148
BtgI CCRYGG 1 cut(s) 74
BtgZI GCGATG 2 cut(s) 293, 1616
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 6 cut(s) 369, 442, 451, 934, 1202, 1440
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 239, 339, 654
Cac8I GCNNGC 1 cut(s) 965
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 3 cut(s) 586, 1275, 1417
ClaI ATCGAT 1 cut(s) 1148
CseI GACGC 2 cut(s) 292, 1523
Csp6I GTAC 5 cut(s) 84, 390, 807, 1248, 1313
CspCI CAANNNNNGTGG 2 cut(s) 1163, 1198
CviQI GTAC 5 cut(s) 84, 390, 807, 1248, 1313
DdeI CTNAG 3 cut(s) 67, 513, 678
DpnI GATC 4 cut(s) 117, 863, 1131, 1426
DpnII GATC 4 cut(s) 115, 861, 1129, 1424
DraIII CACNNNGTG 1 cut(s) 956
DrdI GACNNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 649
Eam1104I CTCTTC 2 cut(s) 12, 1573
EarI CTCTTC 2 cut(s) 12, 1573
EciI GGCGGA 1 cut(s) 868
Eco130I CCWWGG 1 cut(s) 74
Eco147I AGGCCT 4 cut(s) 428, 500, 611, 683
Eco24I GRGCYC 3 cut(s) 50, 981, 1026
Eco31I GGTCTC 1 cut(s) 1505
Eco47I GGWCC 3 cut(s) 586, 1275, 1417
Eco57I CTGAAG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 1417
EcoRI GAATTC 1 cut(s) 1045
EcoRII CCWGG 2 cut(s) 263, 1484
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 3 cut(s) 50, 981, 1026
ErhI CCWWGG 1 cut(s) 74
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 5 cut(s) 10, 552, 1288, 1456, 1476
FauNDI CATATG 1 cut(s) 1191
Fnu4HI GCNGC 4 cut(s) 269, 301, 1002, 1055
FokI GGATG 6 cut(s) 356, 449, 458, 941, 1189, 1447
FriOI GRGCYC 3 cut(s) 50, 981, 1026
Fsp4HI GCNGC 4 cut(s) 269, 301, 1002, 1055
FspBI CTAG 3 cut(s) 1154, 1167, 1557
FspI TGCGCA 1 cut(s) 558
GlaI GCGC 1 cut(s) 558
GluI GCNGC 4 cut(s) 269, 301, 1002, 1055
GsuI CTGGAG 1 cut(s) 1010
HaeIII GGCC 6 cut(s) 428, 500, 611, 683, 740, 876
HapII CCGG 1 cut(s) 122
HgaI GACGC 2 cut(s) 292, 1523
HhaI GCGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 1534
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HindIII AAGCTT 1 cut(s) 1110
HinfI GANTC 4 cut(s) 32, 1370, 1542, 1563
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 20, 1325
Hpy166II GTNNAC 1 cut(s) 807
Hpy188I TCNGA 5 cut(s) 52, 115, 516, 679, 1547
Hpy188III TCNNGA 6 cut(s) 166, 218, 488, 888, 1127, 1367
Hpy8I GTNNAC 1 cut(s) 807
HpyAV CCTTC 8 cut(s) 169, 280, 599, 725, 866, 1068, 1313, 1430
HpyCH4III ACNGT 5 cut(s) 343, 649, 788, 1231, 1279
HpyCH4IV ACGT 3 cut(s) 404, 1253, 1527
HpyCH4V TGCA 7 cut(s) 139, 449, 471, 617, 710, 759, 1606
HpyF10VI GCNNNNNNNGC 1 cut(s) 756
HpyF3I CTNAG 3 cut(s) 67, 513, 678
HpySE526I ACGT 3 cut(s) 404, 1253, 1527
Hsp92I GRCGYC 1 cut(s) 1534
HspAI GCGC 1 cut(s) 557
KpnI GGTACC 1 cut(s) 393
Kzo9I GATC 4 cut(s) 115, 861, 1129, 1424
LmnI GCTCC 4 cut(s) 125, 490, 1029, 1448
Lsp1109I GCAGC 3 cut(s) 255, 312, 1066
LweI GCATC 2 cut(s) 436, 1593
MaeI CTAG 3 cut(s) 1154, 1167, 1557
MaeII ACGT 3 cut(s) 404, 1253, 1527
MaeIII GTNAC 9 cut(s) 8, 400, 624, 827, 948, 1029, 1076, 1141, 1169
MalI GATC 4 cut(s) 117, 863, 1131, 1426
MboI GATC 4 cut(s) 115, 861, 1129, 1424
MboII GAAGA 6 cut(s) 26, 29, 584, 868, 871, 1560
MhlI GDGCHC 5 cut(s) 50, 487, 796, 981, 1026
MluCI AATT 3 cut(s) 1045, 1066, 1283
MlyI GAGTC 3 cut(s) 1364, 1536, 1572
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 6 cut(s) 258, 495, 543, 699, 983, 1395
MslI CAYNNNNRTG 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 982
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 3 cut(s) 123, 265, 1486
Mva1269I GAATGC 3 cut(s) 245, 712, 965
MvaI CCWGG 2 cut(s) 265, 1486
MwoI GCNNNNNNNGC 1 cut(s) 756
NciI CCSGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 1191
NdeII GATC 4 cut(s) 115, 861, 1129, 1424
NlaIV GGNNCC 4 cut(s) 193, 391, 1025, 1276
NmeAIII GCCGAG 1 cut(s) 665
NmuCI GTSAC 6 cut(s) 8, 400, 827, 948, 1141, 1169
NsbI TGCGCA 1 cut(s) 558
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 1 cut(s) 1483
PceI AGGCCT 4 cut(s) 428, 500, 611, 683
PctI GAATGC 3 cut(s) 245, 712, 965
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 4 cut(s) 270, 302, 1003, 1056
Ple19I CGATCG 1 cut(s) 1427
PleI GAGTC 3 cut(s) 1364, 1536, 1571
PpsI GAGTC 3 cut(s) 1364, 1536, 1571
PpuMI RGGWCCY 1 cut(s) 1417
Psp5II RGGWCCY 1 cut(s) 1417
Psp6I CCWGG 2 cut(s) 263, 1484
PspGI CCWGG 2 cut(s) 263, 1484
PspN4I GGNNCC 4 cut(s) 193, 391, 1025, 1276
PspPI GGNCC 3 cut(s) 586, 1275, 1417
PspPPI RGGWCCY 1 cut(s) 1417
PvuI CGATCG 1 cut(s) 1427
RsaI GTAC 5 cut(s) 85, 391, 808, 1249, 1314
RsaNI GTAC 5 cut(s) 84, 390, 807, 1248, 1313
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 6 cut(s) 258, 495, 543, 699, 983, 1395
SatI GCNGC 4 cut(s) 269, 301, 1002, 1055
Sau3AI GATC 4 cut(s) 115, 861, 1129, 1424
Sau96I GGNCC 3 cut(s) 586, 1275, 1417
SchI GAGTC 3 cut(s) 1364, 1536, 1572
ScrFI CCNGG 3 cut(s) 123, 265, 1486
SduI GDGCHC 5 cut(s) 50, 487, 796, 981, 1026
SfaNI GCATC 2 cut(s) 436, 1593
SfcI CTRYAG 1 cut(s) 787
SinI GGWCC 3 cut(s) 586, 1275, 1417
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 5 cut(s) 422, 800, 982, 1034, 1125
SmoI CTYRAG 5 cut(s) 422, 800, 982, 1034, 1125
Sse9I AATT 3 cut(s) 1045, 1066, 1283
SseBI AGGCCT 4 cut(s) 428, 500, 611, 683
SsiI CCGC 2 cut(s) 853, 1002
SspI AATATT 1 cut(s) 574
SspMI CTAG 3 cut(s) 1154, 1167, 1557
StuI AGGCCT 4 cut(s) 428, 500, 611, 683
StyD4I CCNGG 3 cut(s) 121, 263, 1484
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 5 cut(s) 343, 649, 788, 1231, 1279
TaiI ACGT 3 cut(s) 407, 1256, 1530
TaqI TCGA 3 cut(s) 284, 1148, 1423
TasI AATT 3 cut(s) 1045, 1066, 1283
TatI WGTACW 2 cut(s) 83, 1312
TauI GCSGC 1 cut(s) 1004
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 6 cut(s) 258, 495, 543, 699, 983, 1395
Tru9I TTAA 6 cut(s) 258, 495, 543, 699, 983, 1395
TscAI CASTG 3 cut(s) 239, 346, 654
TseFI GTSAC 6 cut(s) 8, 400, 827, 948, 1141, 1169
TseI GCWGC 3 cut(s) 268, 300, 1054
Tsp45I GTSAC 6 cut(s) 8, 400, 827, 948, 1141, 1169
TspDTI ATGAA 8 cut(s) 172, 237, 299, 453, 539, 648, 926, 1381
TspRI CASTG 3 cut(s) 239, 346, 654
Vha464I CTTAAG 1 cut(s) 982
VpaK11BI GGWCC 3 cut(s) 586, 1275, 1417
XapI RAATTY 1 cut(s) 1045
XceI RCATGY 1 cut(s) 1483
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 3 cut(s) 1154, 1167, 1557
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.