Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 2 - 32 | 1.3e-08 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 970 |
| AciI | CCGC | 5 cut(s) | 484, 661, 680, 796, 827 |
| AclWI | GGATC | 4 cut(s) | 135, 316, 500, 513 |
| AcsI | RAATTY | 1 cut(s) | 692 |
| AdeI | CACNNNGTG | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 650, 680, 847, 1022 |
| AgsI | TTSAA | 4 cut(s) | 88, 274, 428, 670 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 890, 922 |
| AluBI | AGCT | 5 cut(s) | 212, 315, 530, 563, 887 |
| AluI | AGCT | 5 cut(s) | 212, 315, 530, 563, 887 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| Alw26I | GTCTC | 1 cut(s) | 857 |
| Alw44I | GTGCAC | 1 cut(s) | 98 |
| AlwI | GGATC | 4 cut(s) | 135, 316, 500, 513 |
| AoxI | GGCC | 1 cut(s) | 634 |
| ApaLI | GTGCAC | 1 cut(s) | 98 |
| ApeKI | GCWGC | 4 cut(s) | 164, 401, 486, 887 |
| ApoI | RAATTY | 1 cut(s) | 692 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 68 |
| AspLEI | GCGC | 1 cut(s) | 46 |
| AspS9I | GGNCC | 2 cut(s) | 843, 1013 |
| AsuC2I | CCSGG | 1 cut(s) | 841 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| AvaII | GGWCC | 2 cut(s) | 843, 1013 |
| BaeGI | GKGCMC | 4 cut(s) | 28, 102, 745, 780 |
| BamHI | GGATCC | 1 cut(s) | 505 |
| BauI | CACGAG | 1 cut(s) | 236 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BbvI | GCAGC | 4 cut(s) | 176, 388, 498, 874 |
| BccI | CCATC | 2 cut(s) | 59, 578 |
| BcnI | CCSGG | 1 cut(s) | 841 |
| BcoDI | GTCTC | 1 cut(s) | 857 |
| BfaI | CTAG | 2 cut(s) | 227, 675 |
| BfoI | RGCGCY | 1 cut(s) | 47 |
| BfuAI | ACCTGC | 1 cut(s) | 970 |
| BisI | GCNGC | 5 cut(s) | 165, 402, 487, 796, 888 |
| BlsI | GCNGC | 5 cut(s) | 166, 403, 488, 797, 889 |
| Bme1390I | CCNGG | 1 cut(s) | 841 |
| Bme18I | GGWCC | 2 cut(s) | 843, 1013 |
| BmgT120I | GGNCC | 2 cut(s) | 843, 1013 |
| BmiI | GGNNCC | 1 cut(s) | 507 |
| BmrFI | CCNGG | 1 cut(s) | 841 |
| BmsI | GCATC | 2 cut(s) | 355, 974 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 230, 262, 232, 264, 992, 1024 |
| BpuEI | CTTGAG | 1 cut(s) | 198 |
| BpuMI | CCSGG | 1 cut(s) | 841 |
| Bsa29I | ATCGAT | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 1 cut(s) | 846 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 650, 680, 847, 1022 |
| Bse3DI | GCAATG | 1 cut(s) | 543 |
| BseCI | ATCGAT | 1 cut(s) | 130 |
| BseDI | CCNNGG | 1 cut(s) | 846 |
| BseGI | GGATG | 5 cut(s) | 302, 361, 370, 880, 1036 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 650, 680, 847, 1022 |
| BseMI | GCAATG | 1 cut(s) | 543 |
| BseMII | CTCAG | 1 cut(s) | 1023 |
| BseSI | GKGCMC | 4 cut(s) | 28, 102, 745, 780 |
| BseXI | GCAGC | 4 cut(s) | 176, 388, 498, 874 |
| BsgI | GTGCAG | 1 cut(s) | 711 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1023 |
| BshFI | GGCC | 1 cut(s) | 636 |
| BshVI | ATCGAT | 1 cut(s) | 130 |
| BsiEI | CGRYCG | 1 cut(s) | 1023 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| BsiSI | CCGG | 1 cut(s) | 841 |
| BslFI | GGGAC | 1 cut(s) | 696 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 650, 680, 847, 1022 |
| BsmAI | GTCTC | 1 cut(s) | 857 |
| BsmFI | GGGAC | 1 cut(s) | 696 |
| BsmI | GAATGC | 1 cut(s) | 289 |
| BsnI | GGCC | 1 cut(s) | 636 |
| Bsp1286I | GDGCHC | 4 cut(s) | 28, 102, 745, 780 |
| Bsp143I | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| BspACI | CCGC | 5 cut(s) | 484, 661, 680, 796, 827 |
| BspANI | GGCC | 1 cut(s) | 636 |
| BspCNI | CTCAG | 1 cut(s) | 1022 |
| BspDI | ATCGAT | 1 cut(s) | 130 |
| BspLI | GGNNCC | 1 cut(s) | 507 |
| BspMI | ACCTGC | 1 cut(s) | 970 |
| BspPI | GGATC | 4 cut(s) | 135, 316, 500, 513 |
| BsrDI | GCAATG | 1 cut(s) | 543 |
| BssECI | CCNNGG | 1 cut(s) | 846 |
| BssMI | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| BssSI | CACGAG | 1 cut(s) | 236 |
| BssT1I | CCWWGG | 1 cut(s) | 846 |
| Bst2BI | CACGAG | 1 cut(s) | 236 |
| Bst4CI | ACNGT | 4 cut(s) | 262, 641, 687, 732 |
| Bst6I | CTCTTC | 1 cut(s) | 912 |
| BstC8I | GCNNGC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 1 cut(s) | 1009 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 648 |
| BstF5I | GGATG | 5 cut(s) | 302, 361, 370, 880, 1036 |
| BstH2I | RGCGCY | 1 cut(s) | 47 |
| BstHHI | GCGC | 1 cut(s) | 46 |
| BstKTI | GATC | 4 cut(s) | 130, 311, 508, 1023 |
| BstMAI | GTCTC | 1 cut(s) | 857 |
| BstMBI | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| BstMCI | CGRYCG | 1 cut(s) | 1023 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 232, 824, 893 |
| BstSCI | CCNGG | 1 cut(s) | 839 |
| BstSLI | GKGCMC | 4 cut(s) | 28, 102, 745, 780 |
| BstV1I | GCAGC | 4 cut(s) | 176, 388, 498, 874 |
| BstX2I | RGATCY | 1 cut(s) | 505 |
| BstYI | RGATCY | 1 cut(s) | 505 |
| Bsu15I | ATCGAT | 1 cut(s) | 130 |
| BsuRI | GGCC | 1 cut(s) | 636 |
| BsuTUI | ATCGAT | 1 cut(s) | 130 |
| BtgZI | GCGATG | 1 cut(s) | 556 |
| BtsCI | GGATG | 5 cut(s) | 302, 361, 370, 880, 1036 |
| BtsI | GCAGTG | 2 cut(s) | 196, 723 |
| BtsIMutI | CAGTG | 2 cut(s) | 196, 723 |
| BveI | ACCTGC | 1 cut(s) | 970 |
| Cac8I | GCNNGC | 1 cut(s) | 561 |
| CfoI | GCGC | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 2 cut(s) | 843, 1013 |
| ClaI | ATCGAT | 1 cut(s) | 130 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 203, 238 |
| CviAII | CATG | 5 cut(s) | 40, 169, 293, 442, 857 |
| DdeI | CTNAG | 1 cut(s) | 1009 |
| DpnI | GATC | 4 cut(s) | 129, 310, 507, 1022 |
| DpnII | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| DraIII | CACNNNGTG | 1 cut(s) | 21 |
| Eam1104I | CTCTTC | 1 cut(s) | 912 |
| EarI | CTCTTC | 1 cut(s) | 912 |
| Eco130I | CCWWGG | 1 cut(s) | 846 |
| Eco47I | GGWCC | 2 cut(s) | 843, 1013 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 648 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1013 |
| EcoT14I | CCWWGG | 1 cut(s) | 846 |
| EcoT22I | ATGCAT | 1 cut(s) | 790 |
| ErhI | CCWWGG | 1 cut(s) | 846 |
| FaeI | CATG | 5 cut(s) | 43, 172, 296, 445, 860 |
| FaqI | GGGAC | 1 cut(s) | 696 |
| FatI | CATG | 5 cut(s) | 39, 168, 292, 441, 856 |
| FauI | CCCGC | 3 cut(s) | 491, 673, 820 |
| Fnu4HI | GCNGC | 5 cut(s) | 165, 402, 487, 796, 888 |
| FokI | GGATG | 5 cut(s) | 309, 368, 377, 887, 1043 |
| Fsp4HI | GCNGC | 5 cut(s) | 165, 402, 487, 796, 888 |
| FspBI | CTAG | 2 cut(s) | 227, 675 |
| GlaI | GCGC | 1 cut(s) | 45 |
| GluI | GCNGC | 5 cut(s) | 165, 402, 487, 796, 888 |
| HaeII | RGCGCY | 1 cut(s) | 47 |
| HaeIII | GGCC | 1 cut(s) | 636 |
| HapII | CCGG | 1 cut(s) | 841 |
| HhaI | GCGC | 1 cut(s) | 46 |
| Hin1II | CATG | 5 cut(s) | 43, 172, 296, 445, 860 |
| Hin6I | GCGC | 1 cut(s) | 44 |
| HinP1I | GCGC | 1 cut(s) | 44 |
| HincII | GTYRAC | 1 cut(s) | 926 |
| HindII | GTYRAC | 1 cut(s) | 926 |
| HindIII | AAGCTT | 1 cut(s) | 528 |
| HinfI | GANTC | 3 cut(s) | 181, 243, 599 |
| HpaII | CCGG | 1 cut(s) | 841 |
| HphI | GGTGA | 1 cut(s) | 40 |
| Hpy166II | GTNNAC | 7 cut(s) | 100, 199, 302, 585, 628, 833, 926 |
| Hpy188III | TCNNGA | 6 cut(s) | 55, 148, 415, 551, 862, 1011 |
| Hpy8I | GTNNAC | 7 cut(s) | 100, 199, 302, 585, 628, 833, 926 |
| HpyAV | CCTTC | 4 cut(s) | 337, 644, 676, 865 |
| HpyCH4III | ACNGT | 4 cut(s) | 262, 641, 687, 732 |
| HpyCH4IV | ACGT | 1 cut(s) | 20 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 232, 824, 893 |
| HpyF3I | CTNAG | 1 cut(s) | 1009 |
| HpySE526I | ACGT | 1 cut(s) | 20 |
| Hsp92II | CATG | 5 cut(s) | 43, 172, 296, 445, 860 |
| HspAI | GCGC | 1 cut(s) | 44 |
| Kzo9I | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| LpnPI | CCDG | 8 cut(s) | 108, 146, 406, 724, 806, 854, 975, 996 |
| Lsp1109I | GCAGC | 4 cut(s) | 176, 388, 498, 874 |
| LweI | GCATC | 2 cut(s) | 355, 974 |
| MaeI | CTAG | 2 cut(s) | 227, 675 |
| MaeII | ACGT | 1 cut(s) | 20 |
| MaeIII | GTNAC | 2 cut(s) | 134, 983 |
| MalI | GATC | 4 cut(s) | 129, 310, 507, 1022 |
| MboI | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| MboII | GAAGA | 5 cut(s) | 17, 814, 817, 923, 929 |
| MflI | RGATCY | 1 cut(s) | 505 |
| MhlI | GDGCHC | 4 cut(s) | 28, 102, 745, 780 |
| MluCI | AATT | 5 cut(s) | 230, 322, 692, 898, 973 |
| MlyI | GAGTC | 1 cut(s) | 608 |
| Mph1103I | ATGCAT | 1 cut(s) | 790 |
| MroXI | GAANNNNTTC | 1 cut(s) | 68 |
| MseI | TTAA | 1 cut(s) | 342 |
| MslI | CAYNNNNRTG | 3 cut(s) | 297, 500, 783 |
| MspI | CCGG | 1 cut(s) | 841 |
| MspR9I | CCNGG | 1 cut(s) | 841 |
| Mva1269I | GAATGC | 1 cut(s) | 289 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 232, 824, 893 |
| NciI | CCSGG | 1 cut(s) | 841 |
| NdeII | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| NlaIII | CATG | 5 cut(s) | 43, 172, 296, 445, 860 |
| NlaIV | GGNNCC | 1 cut(s) | 507 |
| NsiI | ATGCAT | 1 cut(s) | 790 |
| PctI | GAATGC | 1 cut(s) | 289 |
| PdmI | GAANNNNTTC | 1 cut(s) | 68 |
| PfeI | GAWTC | 2 cut(s) | 181, 243 |
| PflFI | GACNNNGTC | 1 cut(s) | 841 |
| PkrI | GCNGC | 5 cut(s) | 166, 403, 488, 797, 889 |
| Ple19I | CGATCG | 1 cut(s) | 1023 |
| PleI | GAGTC | 1 cut(s) | 607 |
| PpsI | GAGTC | 1 cut(s) | 607 |
| PpuMI | RGGWCCY | 1 cut(s) | 1013 |
| Psp5II | RGGWCCY | 1 cut(s) | 1013 |
| PspN4I | GGNNCC | 1 cut(s) | 507 |
| PspPI | GGNCC | 2 cut(s) | 843, 1013 |
| PspPPI | RGGWCCY | 1 cut(s) | 1013 |
| PsuI | RGATCY | 1 cut(s) | 505 |
| PsyI | GACNNNGTC | 1 cut(s) | 841 |
| PvuI | CGATCG | 1 cut(s) | 1023 |
| RseI | CAYNNNNRTG | 3 cut(s) | 297, 500, 783 |
| SaqAI | TTAA | 1 cut(s) | 342 |
| SatI | GCNGC | 5 cut(s) | 165, 402, 487, 796, 888 |
| Sau3AI | GATC | 4 cut(s) | 127, 308, 505, 1020 |
| Sau96I | GGNCC | 2 cut(s) | 843, 1013 |
| SchI | GAGTC | 1 cut(s) | 608 |
| ScrFI | CCNGG | 1 cut(s) | 841 |
| SduI | GDGCHC | 4 cut(s) | 28, 102, 745, 780 |
| SfaNI | GCATC | 2 cut(s) | 355, 974 |
| SinI | GGWCC | 2 cut(s) | 843, 1013 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 297, 500, 783 |
| SmlI | CTYRAG | 1 cut(s) | 213 |
| SmoI | CTYRAG | 1 cut(s) | 213 |
| Sse9I | AATT | 5 cut(s) | 230, 322, 692, 898, 973 |
| SsiI | CCGC | 5 cut(s) | 484, 661, 680, 796, 827 |
| SspMI | CTAG | 2 cut(s) | 227, 675 |
| StyD4I | CCNGG | 1 cut(s) | 839 |
| StyI | CCWWGG | 1 cut(s) | 846 |
| TaaI | ACNGT | 4 cut(s) | 262, 641, 687, 732 |
| TaiI | ACGT | 1 cut(s) | 23 |
| TaqI | TCGA | 2 cut(s) | 130, 861 |
| TasI | AATT | 5 cut(s) | 230, 322, 692, 898, 973 |
| TauI | GCSGC | 1 cut(s) | 798 |
| TfiI | GAWTC | 2 cut(s) | 181, 243 |
| Tru1I | TTAA | 1 cut(s) | 342 |
| Tru9I | TTAA | 1 cut(s) | 342 |
| TscAI | CASTG | 2 cut(s) | 196, 730 |
| TseI | GCWGC | 4 cut(s) | 164, 401, 486, 887 |
| TspDTI | ATGAA | 7 cut(s) | 50, 61, 126, 372, 412, 458, 728 |
| TspRI | CASTG | 2 cut(s) | 196, 730 |
| Tth111I | GACNNNGTC | 1 cut(s) | 841 |
| VneI | GTGCAC | 1 cut(s) | 98 |
| VpaK11BI | GGWCC | 2 cut(s) | 843, 1013 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 648 |
| XapI | RAATTY | 1 cut(s) | 692 |
| XmnI | GAANNNNTTC | 1 cut(s) | 68 |
| XspI | CTAG | 2 cut(s) | 227, 675 |
| Zsp2I | ATGCAT | 1 cut(s) | 790 |