Pfam:UBN2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 83 | 2.5e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 213 |
| AcsI | RAATTY | 1 cut(s) | 160 |
| AgsI | TTSAA | 3 cut(s) | 140, 168, 227 |
| AluBI | AGCT | 2 cut(s) | 182, 200 |
| AluI | AGCT | 2 cut(s) | 182, 200 |
| Alw21I | GWGCWC | 1 cut(s) | 127 |
| Alw26I | GTCTC | 1 cut(s) | 24 |
| AlwI | GGATC | 1 cut(s) | 213 |
| AoxI | GGCC | 1 cut(s) | 240 |
| ApoI | RAATTY | 1 cut(s) | 160 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 50 |
| Bbv12I | GWGCWC | 1 cut(s) | 127 |
| BcoDI | GTCTC | 1 cut(s) | 24 |
| BfaI | CTAG | 1 cut(s) | 120 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 248 |
| BglII | AGATCT | 1 cut(s) | 25 |
| BmsI | GCATC | 1 cut(s) | 106 |
| BpmI | CTGGAG | 1 cut(s) | 45 |
| BpuEI | CTTGAG | 1 cut(s) | 6 |
| BsaJI | CCNNGG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 1 cut(s) | 246 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseRI | GAGGAG | 1 cut(s) | 233 |
| BshFI | GGCC | 1 cut(s) | 242 |
| BsiHKAI | GWGCWC | 1 cut(s) | 127 |
| BslFI | GGGAC | 1 cut(s) | 47 |
| BsmAI | GTCTC | 1 cut(s) | 24 |
| BsmFI | GGGAC | 1 cut(s) | 47 |
| BsnI | GGCC | 1 cut(s) | 242 |
| Bsp1286I | GDGCHC | 1 cut(s) | 127 |
| Bsp143I | GATC | 2 cut(s) | 25, 205 |
| BspANI | GGCC | 1 cut(s) | 242 |
| BspPI | GGATC | 1 cut(s) | 213 |
| BssECI | CCNNGG | 1 cut(s) | 246 |
| BssMI | GATC | 2 cut(s) | 25, 205 |
| Bst4CI | ACNGT | 1 cut(s) | 76 |
| BstDEI | CTNAG | 1 cut(s) | 110 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstKTI | GATC | 2 cut(s) | 28, 208 |
| BstMAI | GTCTC | 1 cut(s) | 24 |
| BstMBI | GATC | 2 cut(s) | 25, 205 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 88, 131, 248 |
| BstX2I | RGATCY | 2 cut(s) | 25, 205 |
| BstYI | RGATCY | 2 cut(s) | 25, 205 |
| BsuRI | GGCC | 1 cut(s) | 242 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| BtsI | GCAGTG | 1 cut(s) | 153 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 3 cut(s) | 182, 200, 242 |
| CviKI_1 | RGCY | 3 cut(s) | 182, 200, 242 |
| DdeI | CTNAG | 1 cut(s) | 110 |
| DpnI | GATC | 2 cut(s) | 27, 207 |
| DpnII | GATC | 2 cut(s) | 25, 205 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 4 cut(s) | 17, 31, 38, 176 |
| FaqI | GGGAC | 1 cut(s) | 47 |
| FatI | CATG | 1 cut(s) | 15 |
| FokI | GGATG | 1 cut(s) | 164 |
| FspBI | CTAG | 1 cut(s) | 120 |
| GsuI | CTGGAG | 1 cut(s) | 45 |
| HaeIII | GGCC | 1 cut(s) | 242 |
| Hin1II | CATG | 1 cut(s) | 19 |
| HindIII | AAGCTT | 1 cut(s) | 198 |
| Hpy188I | TCNGA | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 62, 168 |
| Hpy99I | CGWCG | 1 cut(s) | 76 |
| HpyAV | CCTTC | 1 cut(s) | 19 |
| HpyCH4III | ACNGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 1 cut(s) | 236 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 88, 131, 248 |
| HpyF3I | CTNAG | 1 cut(s) | 110 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| Kzo9I | GATC | 2 cut(s) | 25, 205 |
| LmnI | GCTCC | 2 cut(s) | 79, 179 |
| LpnPI | CCDG | 1 cut(s) | 75 |
| LweI | GCATC | 1 cut(s) | 106 |
| MaeI | CTAG | 1 cut(s) | 120 |
| MalI | GATC | 2 cut(s) | 27, 207 |
| MboI | GATC | 2 cut(s) | 25, 205 |
| MboII | GAAGA | 1 cut(s) | 4 |
| MflI | RGATCY | 2 cut(s) | 25, 205 |
| MhlI | GDGCHC | 1 cut(s) | 127 |
| MluCI | AATT | 4 cut(s) | 47, 83, 160, 171 |
| MmeI | TCCRAC | 1 cut(s) | 95 |
| MnlI | CCTC | 2 cut(s) | 211, 241 |
| MroXI | GAANNNNTTC | 1 cut(s) | 50 |
| MseI | TTAA | 1 cut(s) | 259 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 88, 131, 248 |
| NdeII | GATC | 2 cut(s) | 25, 205 |
| NlaIII | CATG | 1 cut(s) | 19 |
| PdmI | GAANNNNTTC | 1 cut(s) | 50 |
| PsuI | RGATCY | 2 cut(s) | 25, 205 |
| SaqAI | TTAA | 1 cut(s) | 259 |
| Sau3AI | GATC | 2 cut(s) | 25, 205 |
| SduI | GDGCHC | 1 cut(s) | 127 |
| SetI | ASST | 3 cut(s) | 11, 184, 202 |
| SfaNI | GCATC | 1 cut(s) | 106 |
| SgeI | CNNG | 9 cut(s) | 28, 35, 74, 104, 132, 155, 180, 213, 239 |
| SmlI | CTYRAG | 1 cut(s) | 21 |
| SmoI | CTYRAG | 1 cut(s) | 21 |
| Sse9I | AATT | 4 cut(s) | 47, 83, 160, 171 |
| SspMI | CTAG | 1 cut(s) | 120 |
| TaaI | ACNGT | 1 cut(s) | 76 |
| TasI | AATT | 4 cut(s) | 47, 83, 160, 171 |
| Tru1I | TTAA | 1 cut(s) | 259 |
| Tru9I | TTAA | 1 cut(s) | 259 |
| TscAI | CASTG | 1 cut(s) | 153 |
| TspDTI | ATGAA | 1 cut(s) | 4 |
| TspRI | CASTG | 1 cut(s) | 153 |
| XapI | RAATTY | 1 cut(s) | 160 |
| XmnI | GAANNNNTTC | 1 cut(s) | 50 |
| XspI | CTAG | 1 cut(s) | 120 |