Rw7G022890

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000106
Physical Location & Seq
Forward (+)
27283254 .. 27284408
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022890.1

Sequence Viewer

Length: 777 bp
ATGTCAAAAGACATCTCGAGCAGTGTCATCCATTGCAAGGATGCAAGAGAGAACGTCATACATGAATGTGAGCAGGGCACAAACTCAGTCACTTCCTTCTTCACAAAACTCAAAAGCCTATGGGATGAAAAGGATGTTCTCTGTTCCTTTCCTACTTGTACCTGTGAAGCAGCGGCTGAAGTTAAGAATTTCAAGGACACGCAAAAGACCATGAAATTCCTTATGGGACTTAATGAGAATTTTGCACAGACCCGCAGCAACATCATAGGGTTGGATCCACTTCCGAACCTGAACAAAACCTATGCGATGATACTACGCCAAGAGAAGCAGGCAGAGACTACTGCTGGCAAGTCCATGGCATCACCAGAATCCTCTGCCTTTTCAGTGAAGAAAGTGACTCGTGATTTCAAGTCTGTAGAAGGAGAGGCCAAATTTTGTGACAAATGCAACATGACCAACCATAACACAAAGAACTGCAGAGCTCATTTCAAATTCACATACTGCAATGGGAAGGGACATACCTATGACTACTGTCGAAGGAGGAAGAATGCTATTGAAAGTGGCCAAGCAAAATCAAAAGCAAATCATGTAGCCCTTAAAGATGATCAAAAGGAAGCTGCGACTGATTTCCCATTTTCACGCGAAGAGTGTCATCAACTTGTCAATCAGCTCCTAACCAAAACGAAGGCTGCCTCAGCCAATTTGGTCGGTAACATTCCCAATTATGAAGAACTTTCAGGACCTACAATCGGGGAAGATGATTGGGACGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

258

Amino Acids

28.91

Weight (kDa)

7.95

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 642
AciI CCGC 2 cut(s) 173, 253
AclWI GGATC 2 cut(s) 269, 282
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 5 cut(s) 187, 215, 238, 431, 491
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 37, 749
AgsI TTSAA 4 cut(s) 193, 409, 490, 557
AluBI AGCT 3 cut(s) 482, 617, 670
AluI AGCT 3 cut(s) 482, 617, 670
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 2 cut(s) 269, 282
AlwNI CAGNNNCTG 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 2 cut(s) 426, 562
ApeKI GCWGC 4 cut(s) 170, 255, 617, 689
ApoI RAATTY 5 cut(s) 187, 215, 238, 431, 491
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 1 cut(s) 354
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 740
BaeGI GKGCMC 1 cut(s) 80
BalI TGGCCA 1 cut(s) 564
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 484
BauI CACGAG 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 484
BbvCI CCTCAGC 1 cut(s) 694
BbvI GCAGC 4 cut(s) 182, 267, 604, 676
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 329
BfmI CTRYAG 2 cut(s) 414, 475
BisI GCNGC 5 cut(s) 171, 174, 256, 618, 690
BlsI GCNGC 5 cut(s) 172, 175, 257, 619, 691
Bme18I GGWCC 1 cut(s) 740
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 2 cut(s) 31, 368
BoxI GACNNNNGTC 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 694
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 749
Bse3DI GCAATG 2 cut(s) 31, 511
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 4 cut(s) 27, 46, 130, 139
BseLI CCNNNNNNNGG 2 cut(s) 37, 749
BseMI GCAATG 2 cut(s) 31, 511
BseMII CTCAG 2 cut(s) 99, 708
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 4 cut(s) 182, 267, 604, 676
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 2 cut(s) 428, 564
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 16
BslFI GGGAC 2 cut(s) 240, 528
BslI CCNNNNNNNGG 2 cut(s) 37, 749
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 2 cut(s) 240, 528
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 428, 564
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 80, 484
Bsp143I GATC 2 cut(s) 274, 604
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 2 cut(s) 173, 253
BspANI GGCC 2 cut(s) 428, 564
BspCNI CTCAG 2 cut(s) 98, 707
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 479
BspPI GGATC 2 cut(s) 269, 282
BsrDI GCAATG 2 cut(s) 31, 511
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 274, 604
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 639
BstC8I GCNNGC 2 cut(s) 330, 346
BstDEI CTNAG 2 cut(s) 85, 694
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 4 cut(s) 27, 46, 130, 139
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 2 cut(s) 277, 607
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 274, 604
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstPAI GACNNNNGTC 1 cut(s) 531
BstSFI CTRYAG 2 cut(s) 414, 475
BstSLI GKGCMC 1 cut(s) 80
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 4 cut(s) 182, 267, 604, 676
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 2 cut(s) 428, 564
BtgI CCRYGG 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 4 cut(s) 27, 46, 130, 139
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 390
Cac8I GCNNGC 2 cut(s) 330, 346
CaiI CAGNNNCTG 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 740
Csp6I GTAC 1 cut(s) 159
CviAII CATG 5 cut(s) 62, 211, 355, 451, 587
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 85, 694
DpnI GATC 2 cut(s) 276, 606
DpnII GATC 2 cut(s) 274, 604
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 740
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 5 cut(s) 65, 214, 358, 454, 590
FaqI GGGAC 2 cut(s) 240, 528
FatI CATG 5 cut(s) 61, 210, 354, 450, 586
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 5 cut(s) 171, 174, 256, 618, 690
FokI GGATG 4 cut(s) 14, 53, 137, 146
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 5 cut(s) 171, 174, 256, 618, 690
GluI GCNGC 5 cut(s) 171, 174, 256, 618, 690
HaeIII GGCC 2 cut(s) 428, 564
Hin1II CATG 5 cut(s) 65, 214, 358, 454, 590
HinfI GANTC 2 cut(s) 368, 397
HphI GGTGA 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 3 cut(s) 16, 401, 738
HpyAV CCTTC 5 cut(s) 106, 413, 505, 531, 679
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 6 cut(s) 36, 44, 245, 447, 477, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpyF3I CTNAG 2 cut(s) 85, 694
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 5 cut(s) 65, 214, 358, 454, 590
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 2 cut(s) 274, 604
LmnI GCTCC 1 cut(s) 675
LpnPI CCDG 7 cut(s) 59, 175, 302, 314, 330, 378, 723
Lsp1109I GCAGC 4 cut(s) 182, 267, 604, 676
LweI GCATC 2 cut(s) 31, 368
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 4 cut(s) 88, 394, 437, 710
MalI GATC 2 cut(s) 276, 606
MboI GATC 2 cut(s) 274, 604
MboII GAAGA 6 cut(s) 91, 400, 556, 656, 740, 767
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 2 cut(s) 80, 484
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 7 cut(s) 187, 215, 238, 431, 491, 700, 721
MluNI TGGCCA 1 cut(s) 564
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 4 cut(s) 382, 418, 534, 703
Mox20I TGGCCA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 564
MseI TTAA 3 cut(s) 183, 231, 597
MslI CAYNNNNRTG 2 cut(s) 66, 522
Msp20I TGGCCA 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 553
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 1 cut(s) 695
NcoI CCATGG 1 cut(s) 354
NdeII GATC 2 cut(s) 274, 604
NlaIII CATG 5 cut(s) 65, 214, 358, 454, 590
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 3 cut(s) 88, 394, 437
PaeR7I CTCGAG 1 cut(s) 16
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 5 cut(s) 172, 175, 257, 619, 691
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 740
PshAI GACNNNNGTC 1 cut(s) 531
Psp124BI GAGCTC 1 cut(s) 484
Psp5II RGGWCCY 1 cut(s) 740
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 740
PspPPI RGGWCCY 1 cut(s) 740
PstI CTGCAG 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 2 cut(s) 66, 522
SacI GAGCTC 1 cut(s) 484
SaqAI TTAA 3 cut(s) 183, 231, 597
SatI GCNGC 5 cut(s) 171, 174, 256, 618, 690
Sau3AI GATC 2 cut(s) 274, 604
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 1 cut(s) 391
SduI GDGCHC 2 cut(s) 80, 484
SetI ASST 9 cut(s) 57, 164, 291, 302, 484, 524, 619, 672, 745
SfaNI GCATC 2 cut(s) 31, 368
SfcI CTRYAG 2 cut(s) 414, 475
Sfr274I CTCGAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 740
SlaI CTCGAG 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 66, 522
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 7 cut(s) 187, 215, 238, 431, 491, 700, 721
SsiI CCGC 2 cut(s) 173, 253
SstI GAGCTC 1 cut(s) 484
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 17, 535
TasI AATT 7 cut(s) 187, 215, 238, 431, 491, 700, 721
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 3 cut(s) 183, 231, 597
Tru9I TTAA 3 cut(s) 183, 231, 597
TscAI CASTG 2 cut(s) 28, 390
TseFI GTSAC 3 cut(s) 88, 394, 437
TseI GCWGC 4 cut(s) 170, 255, 617, 689
Tsp45I GTSAC 3 cut(s) 88, 394, 437
TspDTI ATGAA 4 cut(s) 78, 141, 227, 741
TspRI CASTG 2 cut(s) 28, 390
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 5 cut(s) 187, 215, 238, 431, 491
XhoI CTCGAG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.