transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 5 - 54 | 2.4e-14 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 29 |
| AcsI | RAATTY | 1 cut(s) | 80 |
| AgsI | TTSAA | 2 cut(s) | 77, 87 |
| Alw26I | GTCTC | 2 cut(s) | 99, 106 |
| ApoI | RAATTY | 1 cut(s) | 80 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| BanI | GGYRCC | 1 cut(s) | 29 |
| BcoDI | GTCTC | 2 cut(s) | 99, 106 |
| BmiI | GGNNCC | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 1 cut(s) | 81 |
| BshNI | GGYRCC | 1 cut(s) | 29 |
| BsmAI | GTCTC | 2 cut(s) | 99, 106 |
| BsmBI | CGTCTC | 1 cut(s) | 99 |
| Bsp143I | GATC | 1 cut(s) | 37 |
| BspLI | GGNNCC | 1 cut(s) | 31 |
| BspT107I | GGYRCC | 1 cut(s) | 29 |
| BssMI | GATC | 1 cut(s) | 37 |
| Bst4CI | ACNGT | 1 cut(s) | 93 |
| BstDEI | CTNAG | 2 cut(s) | 60, 126 |
| BstKTI | GATC | 1 cut(s) | 40 |
| BstMAI | GTCTC | 2 cut(s) | 99, 106 |
| BstMBI | GATC | 1 cut(s) | 37 |
| CviAII | CATG | 2 cut(s) | 5, 53 |
| CviJI | RGCY | 1 cut(s) | 182 |
| CviKI_1 | RGCY | 1 cut(s) | 182 |
| DdeI | CTNAG | 2 cut(s) | 60, 126 |
| DpnI | GATC | 1 cut(s) | 39 |
| DpnII | GATC | 1 cut(s) | 37 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| Esp3I | CGTCTC | 1 cut(s) | 99 |
| FaeI | CATG | 2 cut(s) | 8, 56 |
| FaiI | YATR | 4 cut(s) | 6, 42, 44, 54 |
| FatI | CATG | 2 cut(s) | 4, 52 |
| FauNDI | CATATG | 1 cut(s) | 42 |
| Hin1II | CATG | 2 cut(s) | 8, 56 |
| HinfI | GANTC | 2 cut(s) | 23, 173 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 1 cut(s) | 163 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4III | ACNGT | 1 cut(s) | 93 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 126 |
| Hsp92II | CATG | 2 cut(s) | 8, 56 |
| Kzo9I | GATC | 1 cut(s) | 37 |
| MalI | GATC | 1 cut(s) | 39 |
| MboI | GATC | 1 cut(s) | 37 |
| MluCI | AATT | 2 cut(s) | 80, 168 |
| MlyI | GAGTC | 1 cut(s) | 182 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 155, 208 |
| NdeI | CATATG | 1 cut(s) | 42 |
| NdeII | GATC | 1 cut(s) | 37 |
| NlaIII | CATG | 2 cut(s) | 8, 56 |
| NlaIV | GGNNCC | 1 cut(s) | 31 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PfeI | GAWTC | 1 cut(s) | 23 |
| PleI | GAGTC | 1 cut(s) | 181 |
| PpsI | GAGTC | 1 cut(s) | 181 |
| PspN4I | GGNNCC | 1 cut(s) | 31 |
| SaqAI | TTAA | 2 cut(s) | 155, 208 |
| Sau3AI | GATC | 1 cut(s) | 37 |
| SchI | GAGTC | 1 cut(s) | 182 |
| SetI | ASST | 1 cut(s) | 132 |
| SgeI | CNNG | 5 cut(s) | 17, 39, 65, 82, 110 |
| SmlI | CTYRAG | 1 cut(s) | 96 |
| SmoI | CTYRAG | 1 cut(s) | 96 |
| Sse9I | AATT | 2 cut(s) | 80, 168 |
| TaaI | ACNGT | 1 cut(s) | 93 |
| TasI | AATT | 2 cut(s) | 80, 168 |
| TfiI | GAWTC | 1 cut(s) | 23 |
| Tru1I | TTAA | 2 cut(s) | 155, 208 |
| Tru9I | TTAA | 2 cut(s) | 155, 208 |
| TspDTI | ATGAA | 1 cut(s) | 182 |
| XapI | RAATTY | 1 cut(s) | 80 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |