Rw7G037990

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000106
Physical Location & Seq
Forward (+)
57649644 .. 57651163
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037990.1

Sequence Viewer

Length: 1209 bp
ATGGCAGGAGATGACGTTTTGAAGATAGAGCAGAACAAGAATTCAACCTCTGCTTCACAGAGAAACCCCGAACCATGGGAGAACCCAAATCACCCCCTCTTTCTCCATCATTCAGATCAACCTGGCGCAACTCTTGTGTCCCAACCACTGATGGAAGATAATTACACCACATGGGTCCAGTCTATGAGCATGGCCCTGACTATCAAGAATAAGAAAGGCTTCATTGATGGGACTCTCAAGAGACCAACACATAATCCTAATGAGCAGCAACAATGGGATCGATGCAATACCCTTGTCAAGACTTGGCTACTTGGAGCAATGTCAAAGGAAATCTCAAGCAGTGTTATTCACTGCAAAGAAGCGAGAGATATGTGGACTGAGATTCAGGAGCGGTTCTCTCATATGAATACAGTTCAACTATTTAATATAGAGAATGCTATTCATGACTGCGAACAAGGTGCAAATTCAGTTACAGCATTTTTCACAAAACTTAAAAGTCTTTGGGATGAAAAGGATGCCCTTTGTACTTTTCCACCATGCCAATGTGAAGTAGCTGCTGAAGTCAAAGCCTATCTAGAAACACAGAAGACTATGAAGTTTCTGATGGGACTTGGTGAGAGCTATGCAACCATTCGAAGTAATGTAATTGGAATGGATCCACTTCCAAATGTAAACAAGGCTTATGCCATGGCCTTGCGTCATGAGAAACAGGCAGAGGTCTCTAATGGGAAGACATCTGCACCACCTGAAGCGTCCGCTTTTTCTGTGAAAAAGTTCCATCGTGCTACTAATTCAACAGAAGGAGAAAAGAAATGTGAAAAGTGCAACATGACAAACCATAGCACGAAAAATTGCAGGGCACATCTCAAATGCACCTATTGTAATGGCAAGGGGCATACCTACGAATATTGTCGTAGGAGGAAAAATGCAATGGAAGGAGGGCAACAAGCAAGGGCCAACCATGTAGCTTCTTCAAGTGCCAACAAAGAAGGGATGACAACCTTTCCCTTTTCCCAAGAGGAGTGTAATCAAATGCTTGGTCTTCTGAGCAAATTTAAGACCGTTGCTAGCAACCAAGATGATTATCACCAAATGCTAGGAGCCTTGAACAAGCCTAACTCATCTGCAGTCAATCTTGTTGGTAATGTTCCTAATTATGAGGAACTTTCAGGACCTACGATCGGGGAAGACGATTGGAACGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

402

Amino Acids

45.04

Weight (kDa)

6.91

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 36 - 82 1.2e-17 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 391
AciI CCGC 2 cut(s) 391, 756
AclWI GGATC 3 cut(s) 285, 650, 663
AcsI RAATTY 3 cut(s) 40, 463, 1052
AcuI CTGAAG 2 cut(s) 579, 768
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 75, 1181
AgsI TTSAA 6 cut(s) 22, 45, 416, 795, 975, 1108
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 3 cut(s) 554, 621, 968
AluI AGCT 3 cut(s) 554, 621, 968
Alw26I GTCTC 2 cut(s) 235, 724
AlwI GGATC 3 cut(s) 285, 650, 663
AoxI GGCC 3 cut(s) 192, 690, 954
ApeKI GCWGC 2 cut(s) 265, 554
ApoI RAATTY 3 cut(s) 40, 463, 1052
ArsI GACNNNNNNTTYG 2 cut(s) 1024, 1056
Asp700I GAANNNNTTC 2 cut(s) 218, 773
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 4 cut(s) 175, 193, 954, 1172
AsuHPI GGTGA 3 cut(s) 83, 626, 1079
AsuII TTCGAA 1 cut(s) 634
AsuNHI GCTAGC 1 cut(s) 1067
AvaII GGWCC 2 cut(s) 175, 1172
BaeGI GKGCMC 1 cut(s) 862
BamHI GGATCC 1 cut(s) 655
BbsI GAAGAC 4 cut(s) 593, 737, 1034, 1194
BbvI GCAGC 2 cut(s) 277, 541
BccI CCATC 5 cut(s) 114, 145, 221, 598, 786
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 235, 724
BfaI CTAG 3 cut(s) 575, 1068, 1097
BfmI CTRYAG 1 cut(s) 1125
BisI GCNGC 2 cut(s) 266, 555
BlsI GCNGC 2 cut(s) 267, 556
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 2 cut(s) 175, 1172
BmgT120I GGNCC 4 cut(s) 175, 193, 954, 1172
BmiI GGNNCC 3 cut(s) 176, 657, 1102
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 272, 505
BmtI GCTAGC 1 cut(s) 1071
BpiI GAAGAC 4 cut(s) 593, 737, 1034, 1194
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu14I TTCGAA 1 cut(s) 634
BpuEI CTTGAG 2 cut(s) 221, 319
Bsa29I ATCGAT 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 1083
BsaI GGTCTC 2 cut(s) 235, 724
BsaJI CCNNGG 2 cut(s) 74, 687
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 1181
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 2 cut(s) 324, 936
Bse8I GATNNNNATC 1 cut(s) 1083
BseBI CCWGG 1 cut(s) 123
BseCI ATCGAT 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 74, 687
BseGI GGATG 3 cut(s) 511, 520, 999
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 2 cut(s) 75, 1181
BseMI GCAATG 2 cut(s) 324, 936
BseMII CTCAG 2 cut(s) 369, 1037
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 1034
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 2 cut(s) 277, 541
BsgI GTGCAG 1 cut(s) 723
Bsh1285I CGRYCG 1 cut(s) 1182
BshFI GGCC 3 cut(s) 194, 692, 956
BshVI ATCGAT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 1182
BslFI GGGAC 3 cut(s) 124, 244, 621
BslI CCNNNNNNNGG 2 cut(s) 75, 1181
BsmAI GTCTC 2 cut(s) 235, 724
BsmFI GGGAC 3 cut(s) 124, 244, 621
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 3 cut(s) 194, 692, 956
Bso31I GGTCTC 2 cut(s) 235, 724
Bsp119I TTCGAA 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 862
Bsp143I GATC 4 cut(s) 115, 277, 655, 1179
Bsp19I CCATGG 2 cut(s) 74, 687
BspACI CCGC 2 cut(s) 391, 756
BspANI GGCC 3 cut(s) 194, 692, 956
BspCNI CTCAG 2 cut(s) 370, 1038
BspDI ATCGAT 1 cut(s) 280
BspHI TCATGA 2 cut(s) 442, 700
BspLI GGNNCC 3 cut(s) 176, 657, 1102
BspMAI CTGCAG 1 cut(s) 1129
BspOI GCTAGC 1 cut(s) 1071
BspPI GGATC 3 cut(s) 285, 650, 663
BspT104I TTCGAA 1 cut(s) 634
BspTNI GGTCTC 2 cut(s) 235, 724
BsrBI CCGCTC 1 cut(s) 391
BsrDI GCAATG 2 cut(s) 324, 936
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 74, 687
BssMI GATC 4 cut(s) 115, 277, 655, 1179
BssT1I CCWWGG 2 cut(s) 74, 687
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 412, 1063
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 1069
BstDEI CTNAG 2 cut(s) 378, 1046
BstDSI CCRYGG 2 cut(s) 74, 687
BstF5I GGATG 3 cut(s) 511, 520, 999
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 118, 280, 658, 1182
BstMAI GTCTC 2 cut(s) 235, 724
BstMBI GATC 4 cut(s) 115, 277, 655, 1179
BstMCI CGRYCG 1 cut(s) 1182
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 1125
BstSLI GKGCMC 1 cut(s) 862
BstV1I GCAGC 2 cut(s) 277, 541
BstV2I GAAGAC 4 cut(s) 593, 737, 1034, 1194
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
Bsu15I ATCGAT 1 cut(s) 280
BsuRI GGCC 3 cut(s) 194, 692, 956
BsuTUI ATCGAT 1 cut(s) 280
BtgI CCRYGG 2 cut(s) 74, 687
BtsCI GGATG 3 cut(s) 511, 520, 999
BtsI GCAGTG 2 cut(s) 346, 349
BtsIMutI CAGTG 3 cut(s) 146, 346, 349
Cac8I GCNNGC 1 cut(s) 1069
CciI TCATGA 2 cut(s) 442, 700
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 4 cut(s) 175, 193, 954, 1172
ClaI ATCGAT 1 cut(s) 280
CseI GACGC 2 cut(s) 686, 741
Csp6I GTAC 1 cut(s) 525
CviAII CATG 9 cut(s) 75, 171, 190, 443, 537, 688, 701, 829, 962
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 2 cut(s) 378, 1046
DpnI GATC 4 cut(s) 117, 279, 657, 1181
DpnII GATC 4 cut(s) 115, 277, 655, 1179
Eco130I CCWWGG 2 cut(s) 74, 687
Eco31I GGTCTC 2 cut(s) 235, 724
Eco47I GGWCC 2 cut(s) 175, 1172
Eco57I CTGAAG 2 cut(s) 579, 768
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 74, 687
ErhI CCWWGG 2 cut(s) 74, 687
FaeI CATG 9 cut(s) 78, 174, 193, 446, 540, 691, 704, 832, 965
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 3 cut(s) 124, 244, 621
FatI CATG 9 cut(s) 74, 170, 189, 442, 536, 687, 700, 828, 961
FauNDI CATATG 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 266, 555
FokI GGATG 3 cut(s) 518, 527, 1006
Fsp4HI GCNGC 2 cut(s) 266, 555
FspBI CTAG 3 cut(s) 575, 1068, 1097
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 266, 555
HaeIII GGCC 3 cut(s) 194, 692, 956
HgaI GACGC 2 cut(s) 686, 741
HhaI GCGC 1 cut(s) 128
Hin1II CATG 9 cut(s) 78, 174, 193, 446, 540, 691, 704, 832, 965
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 232, 382
HphI GGTGA 3 cut(s) 83, 626, 1079
Hpy166II GTNNAC 2 cut(s) 375, 673
Hpy188I TCNGA 3 cut(s) 115, 603, 1047
Hpy188III TCNNGA 8 cut(s) 205, 238, 298, 386, 443, 575, 701, 1170
Hpy8I GTNNAC 2 cut(s) 375, 673
HpyAV CCTTC 3 cut(s) 794, 929, 983
HpyCH4III ACNGT 2 cut(s) 412, 1063
HpyCH4IV ACGT 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 378, 1046
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 9 cut(s) 78, 174, 193, 446, 540, 691, 704, 832, 965
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 115, 277, 655, 1179
LmnI GCTCC 3 cut(s) 314, 388, 1100
LpnPI CCDG 9 cut(s) 108, 135, 191, 209, 371, 695, 759, 841, 1155
Lsp1109I GCAGC 2 cut(s) 277, 541
LweI GCATC 2 cut(s) 272, 505
MaeI CTAG 3 cut(s) 575, 1068, 1097
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 117, 279, 657, 1181
MbiI CCGCTC 1 cut(s) 391
MboI GATC 4 cut(s) 115, 277, 655, 1179
MboII GAAGA 7 cut(s) 34, 167, 598, 742, 963, 1034, 1199
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 8 cut(s) 40, 160, 463, 645, 790, 850, 1052, 1153
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 7 cut(s) 58, 107, 709, 912, 932, 1012, 1153
MroXI GAANNNNTTC 2 cut(s) 218, 773
MseI TTAA 3 cut(s) 423, 492, 1056
MslI CAYNNNNRTG 1 cut(s) 541
MspR9I CCNGG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 1 cut(s) 123
NcoI CCATGG 2 cut(s) 74, 687
NdeI CATATG 1 cut(s) 402
NdeII GATC 4 cut(s) 115, 277, 655, 1179
NheI GCTAGC 1 cut(s) 1067
NlaIII CATG 9 cut(s) 78, 174, 193, 446, 540, 691, 704, 832, 965
NlaIV GGNNCC 3 cut(s) 176, 657, 1102
NspV TTCGAA 1 cut(s) 634
PagI TCATGA 2 cut(s) 442, 700
PcsI WCGNNNNNNNCGW 1 cut(s) 1188
PctI GAATGC 1 cut(s) 439
PdmI GAANNNNTTC 2 cut(s) 218, 773
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 2 cut(s) 267, 556
Ple19I CGATCG 1 cut(s) 1182
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 1172
Psp5II RGGWCCY 1 cut(s) 1172
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 176, 657, 1102
PspPI GGNCC 4 cut(s) 175, 193, 954, 1172
PspPPI RGGWCCY 1 cut(s) 1172
PstI CTGCAG 1 cut(s) 1129
PsuI RGATCY 1 cut(s) 655
PvuI CGATCG 1 cut(s) 1182
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 3 cut(s) 423, 492, 1056
SatI GCNGC 2 cut(s) 266, 555
Sau3AI GATC 4 cut(s) 115, 277, 655, 1179
Sau96I GGNCC 4 cut(s) 175, 193, 954, 1172
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 2 cut(s) 272, 505
SfcI CTRYAG 1 cut(s) 1125
SfuI TTCGAA 1 cut(s) 634
SinI GGWCC 2 cut(s) 175, 1172
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 2 cut(s) 236, 334
SmoI CTYRAG 2 cut(s) 236, 334
Sse9I AATT 8 cut(s) 40, 160, 463, 645, 790, 850, 1052, 1153
SsiI CCGC 2 cut(s) 391, 756
SspI AATATT 1 cut(s) 908
SspMI CTAG 3 cut(s) 575, 1068, 1097
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 2 cut(s) 74, 687
TaaI ACNGT 2 cut(s) 412, 1063
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 280, 634
TasI AATT 8 cut(s) 40, 160, 463, 645, 790, 850, 1052, 1153
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 3 cut(s) 423, 492, 1056
Tru9I TTAA 3 cut(s) 423, 492, 1056
TscAI CASTG 3 cut(s) 153, 346, 356
TseI GCWGC 2 cut(s) 265, 554
TspDTI ATGAA 5 cut(s) 211, 419, 431, 522, 608
TspRI CASTG 3 cut(s) 153, 346, 356
VpaK11BI GGWCC 2 cut(s) 175, 1172
XapI RAATTY 3 cut(s) 40, 463, 1052
XbaI TCTAGA 1 cut(s) 574
XmnI GAANNNNTTC 2 cut(s) 218, 773
XspI CTAG 3 cut(s) 575, 1068, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.