FvH4_6g40340

Cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000106
Physical Location & Seq
Reverse (-)
31884519 .. 31891438
6920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40340.t1

Sequence Viewer

Length: 1677 bp
ATGAGCTCTGAAAGTAGCATGGCAAATGCAAATGGCAACTGCTTGGGATGGGCTGCAAGGGATGCTTCCGGAATCCTATCGCCTTACAAATTTAACCGAAGGGATGTTCAAGCTGACGATGTTTCGATAAAGATCACACACTGCGGAGTTTGTTATGCTGAGGTCGTTTGGCCAAAGAACAAACATGGAGATGCAACCTATCCTATGGTGCCTGGAGCCTTAAATTCCAAGAACAAGCTCGGATTCGTCAACGGTTCCATCAAGGCTCCCTCAGAAGAAACTGACCCTGAAGGCTATGCGATTTGGTCGCGTTGCAATGATATGGTTCATTCCTGGATCGTCAACTCTTGCGATCCAGAAATAGCTGACAGTGTGACCTACTATCCTAATGCTCATGAAGTTTGGGAGGATCTCCATGAGCGTTTTTCTCAAGCGAATGCGACTCGCATTTTCGAAATACAACGAGAAATTGCTTCTCATCGTCAAGAACAACTCCCTGTCTCTACCTACTACACGAAATTGAAGAGTTTCTGGGATGAATTGGCCACATATTCAGACACAGCACATGGAGCACAAGCAGATCAACAGCGATTGATGCAATTCTTAATGGGATTAAATGAGACTTACAGTGCAATTCGCGGACAGATCCTATTGATGAATCCTCTCCCTACTGTTCGCCAAGCATATGCTGCTATATCTCAAGAAGAAAAACAACGCCTTTTCAGCGTTTCACACACCACAACAGAACTGGATTCAAGCGCAGCCATGGCGAAGGACGCTCTTCTTTTGCGTCTCAAGAAGTGCGCCGATCCATGGGCCGAGGTAGAGGCAGGCCTCAGTGTGTTAATTGTGGAGACATGGGCCATTGGGTCCAAACGTGCTATCAACTCATTGGATATCCACCAGGCCATCCTAAAGCAAAACAAAATTCTATGGCAAATTCAAGCAATTTTCGAAGTGCTCCTTCTGCTAATCAATCGATCTACATTTCCAGTCGATGAAGCAACTGTGTTTAGTAATCTTATTTTGTCACGAAACTATAGGTACTGCTTCAAAATACCAGAGGACTACCCCTTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACAAACCTGGTAAATCCCTAGGGGTCATCGGCCTCGGTGGTCTTGGTCACATGGCTGTGAAATTCGGCAAAGCCTTCGGACTCAAGGTGACCGTTTTCAGCACAAGCATGTCTAAGAAAGATGAAGCTCTAACTGTTCTTGGAGCTGACAGCTTCGTGGTCTCGTCTGACCAAGACCAGATGAAGGCACTGGCTAAGTCACTTGACTTCATCGTTGACACAGCATCTGGTCATCACCCGTTCGACTTGTACATGTCAGTACTGAAGACTGCTGGTGTTCTAGTCCTTGTGGGTGCCCCAAGTGAAATCAAATTGAACCCTATGAGCCTTCTTATAGGTAAGAGATCAATTACCGGTAGCGCATCAGGTGGTACGAAACAGATTCAAGAAATGTTAAACTTCTGTGCTGCTCACAAGATATATCCAAACATAGAAGTTGTTCCAATTCAGTATGTGAATGAAGCTATTGAGAGGCTCATAAAGAAGGATGTCAAGTACCGCTTTGTGGTAGACATTGGAAACTCCCTGAAATGA

Protein Analysis

559

Amino Acids

61.72

Weight (kDa)

6.71

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 74 - 239 4.4e-09 gag-polypeptide of LTR copia-type
ADH_zinc_N PF00107 395 - 517 1.6e-19 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 428 - 541 9.6e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 208, 1436
AccI GTMKAC 1 cut(s) 1653
AccII CGCG 2 cut(s) 310, 639
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 3 cut(s) 144, 639, 1642
AclWI GGATC 5 cut(s) 344, 347, 417, 640, 803
AcoI YGGCCR 2 cut(s) 170, 543
AcsI RAATTY 5 cut(s) 89, 223, 927, 939, 1205
AcuI CTGAAG 3 cut(s) 309, 1065, 1427
AfaI GTAC 5 cut(s) 1046, 1394, 1404, 1516, 1640
AfiI CCNNNNNNNGG 3 cut(s) 813, 1327, 1648
AflIII ACRYGT 1 cut(s) 1395
AgeI ACCGGT 1 cut(s) 1496
AgsI TTSAA 7 cut(s) 110, 523, 756, 944, 1054, 1459, 1529
AjnI CCWGG 4 cut(s) 211, 332, 903, 1150
AluBI AGCT 8 cut(s) 6, 113, 238, 365, 1271, 1289, 1296, 1607
AluI AGCT 8 cut(s) 6, 113, 238, 365, 1271, 1289, 1296, 1607
Alw21I GWGCWC 3 cut(s) 8, 574, 963
Alw26I GTCTC 5 cut(s) 505, 614, 797, 848, 1309
AlwI GGATC 5 cut(s) 344, 347, 417, 640, 803
AlwNI CAGNNNCTG 1 cut(s) 1370
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 7 cut(s) 170, 543, 816, 832, 861, 906, 1174
ApeKI GCWGC 5 cut(s) 53, 689, 761, 1085, 1550
ApoI RAATTY 5 cut(s) 89, 223, 927, 939, 1205
AsiGI ACCGGT 1 cut(s) 1496
Asp700I GAANNNNTTC 2 cut(s) 527, 1581
AspA2I CCTAGG 1 cut(s) 1162
AspLEI GCGC 3 cut(s) 761, 806, 1505
AspS9I GGNCC 4 cut(s) 816, 861, 870, 1132
AsuHPI GGTGA 2 cut(s) 1243, 1370
AsuII TTCGAA 2 cut(s) 453, 954
AvaII GGWCC 2 cut(s) 870, 1132
AvrII CCTAGG 1 cut(s) 1162
BaeGI GKGCMC 1 cut(s) 1441
BalI TGGCCA 2 cut(s) 172, 545
BanI GGYRCC 2 cut(s) 208, 1436
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 1415
Bbv12I GWGCWC 3 cut(s) 8, 574, 963
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 40, 676, 773, 1097, 1537
BccI CCATC 4 cut(s) 42, 266, 917, 1123
BcgI CGANNNNNNTGC 2 cut(s) 1201, 1235
BciT130I CCWGG 4 cut(s) 213, 334, 905, 1152
BcoDI GTCTC 5 cut(s) 505, 614, 797, 848, 1309
BfaI CTAG 2 cut(s) 1163, 1424
BfmI CTRYAG 1 cut(s) 1039
BisI GCNGC 5 cut(s) 54, 690, 762, 1086, 1551
BlnI CCTAGG 1 cut(s) 1162
BlsI GCNGC 5 cut(s) 55, 691, 763, 1087, 1552
BmcAI AGTACT 1 cut(s) 1404
Bme1390I CCNGG 4 cut(s) 213, 334, 905, 1152
Bme18I GGWCC 2 cut(s) 870, 1132
BmgT120I GGNCC 4 cut(s) 816, 861, 870, 1132
BmiI GGNNCC 6 cut(s) 210, 217, 256, 267, 871, 1438
BmrFI CCNGG 4 cut(s) 213, 334, 905, 1152
BmsI GCATC 5 cut(s) 52, 181, 585, 1376, 1514
BpiI GAAGAC 1 cut(s) 1415
BpmI CTGGAG 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 2 cut(s) 453, 954
BpuEI CTTGAG 4 cut(s) 414, 684, 779, 1211
Bsa29I ATCGAT 1 cut(s) 979
BsaBI GATNNNNATC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 1309
BsaJI CCNNGG 6 cut(s) 765, 812, 819, 1074, 1162, 1177
BsaWI WCCGGW 2 cut(s) 68, 1496
Bsc4I CCNNNNNNNGG 3 cut(s) 813, 1327, 1648
Bse118I RCCGGY 1 cut(s) 1496
Bse1I ACTGG 3 cut(s) 753, 992, 1338
Bse3DI GCAATG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 4 cut(s) 213, 334, 905, 1152
BseCI ATCGAT 1 cut(s) 979
BseDI CCNNGG 6 cut(s) 765, 812, 819, 1074, 1162, 1177
BseGI GGATG 6 cut(s) 53, 67, 109, 541, 909, 1636
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 813, 1327, 1648
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 3 cut(s) 150, 285, 850
BseNI ACTGG 3 cut(s) 753, 992, 1338
BseSI GKGCMC 1 cut(s) 1441
BseXI GCAGC 5 cut(s) 40, 676, 773, 1097, 1537
Bsh1236I CGCG 2 cut(s) 310, 639
BshFI GGCC 7 cut(s) 172, 545, 818, 834, 863, 908, 1176
BshNI GGYRCC 2 cut(s) 208, 1436
BshTI ACCGGT 1 cut(s) 1496
BshVI ATCGAT 1 cut(s) 979
BsiHKAI GWGCWC 3 cut(s) 8, 574, 963
BsiSI CCGG 2 cut(s) 69, 1497
BslI CCNNNNNNNGG 3 cut(s) 813, 1327, 1648
BsmAI GTCTC 5 cut(s) 505, 614, 797, 848, 1309
BsmBI CGTCTC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 7 cut(s) 172, 545, 818, 834, 863, 908, 1176
Bso31I GGTCTC 1 cut(s) 1309
Bsp119I TTCGAA 2 cut(s) 453, 954
Bsp1286I GDGCHC 4 cut(s) 8, 574, 963, 1441
Bsp13I TCCGGA 1 cut(s) 68
Bsp1407I TGTACA 1 cut(s) 1392
Bsp143I GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
Bsp19I CCATGG 2 cut(s) 765, 812
BspACI CCGC 3 cut(s) 144, 639, 1642
BspANI GGCC 7 cut(s) 172, 545, 818, 834, 863, 908, 1176
BspCNI CTCAG 3 cut(s) 151, 284, 849
BspDI ATCGAT 1 cut(s) 979
BspEI TCCGGA 1 cut(s) 68
BspFNI CGCG 2 cut(s) 310, 639
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 6 cut(s) 210, 217, 256, 267, 871, 1438
BspPI GGATC 5 cut(s) 344, 347, 417, 640, 803
BspQI GCTCTTC 1 cut(s) 786
BspT104I TTCGAA 2 cut(s) 453, 954
BspT107I GGYRCC 2 cut(s) 208, 1436
BspTNI GGTCTC 1 cut(s) 1309
BsrDI GCAATG 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 1496
BsrGI TGTACA 1 cut(s) 1392
BsrI ACTGG 3 cut(s) 753, 992, 1338
BssAI RCCGGY 1 cut(s) 1496
BssECI CCNNGG 6 cut(s) 765, 812, 819, 1074, 1162, 1177
BssMI GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
BssT1I CCWWGG 4 cut(s) 765, 812, 1074, 1162
Bst2UI CCWGG 4 cut(s) 213, 334, 905, 1152
Bst4CI ACNGT 8 cut(s) 254, 371, 629, 673, 1009, 1114, 1237, 1279
Bst6I CTCTTC 2 cut(s) 518, 786
BstAPI GCANNNNNTGC 2 cut(s) 62, 689
BstAUI TGTACA 1 cut(s) 1392
BstBI TTCGAA 2 cut(s) 453, 954
BstC8I GCNNGC 2 cut(s) 832, 1105
BstDEI CTNAG 5 cut(s) 159, 271, 836, 1257, 1338
BstDSI CCRYGG 2 cut(s) 765, 812
BstEII GGTNACC 1 cut(s) 1231
BstF5I GGATG 6 cut(s) 53, 67, 109, 541, 909, 1636
BstFNI CGCG 2 cut(s) 310, 639
BstHHI GCGC 3 cut(s) 761, 806, 1505
BstKTI GATC 9 cut(s) 135, 339, 355, 412, 583, 648, 811, 983, 1490
BstMAI GTCTC 5 cut(s) 505, 614, 797, 848, 1309
BstMBI GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
BstMWI GCNNNNNNNGC 9 cut(s) 62, 569, 595, 689, 723, 767, 776, 967, 1085
BstNI CCWGG 4 cut(s) 213, 334, 905, 1152
BstNSI RCATGY 2 cut(s) 1255, 1399
BstPI GGTNACC 1 cut(s) 1231
BstSCI CCNGG 4 cut(s) 211, 332, 903, 1150
BstSFI CTRYAG 1 cut(s) 1039
BstSLI GKGCMC 1 cut(s) 1441
BstUI CGCG 2 cut(s) 310, 639
BstV1I GCAGC 5 cut(s) 40, 676, 773, 1097, 1537
BstV2I GAAGAC 1 cut(s) 1415
BstX2I RGATCY 2 cut(s) 409, 645
BstYI RGATCY 2 cut(s) 409, 645
Bsu15I ATCGAT 1 cut(s) 979
BsuRI GGCC 7 cut(s) 172, 545, 818, 834, 863, 908, 1176
BsuTUI ATCGAT 1 cut(s) 979
BtgI CCRYGG 2 cut(s) 765, 812
BtsCI GGATG 6 cut(s) 53, 67, 109, 541, 909, 1636
BtsI GCAGTG 2 cut(s) 139, 1091
BtsIMutI CAGTG 6 cut(s) 139, 376, 634, 844, 1091, 1331
Cac8I GCNNGC 2 cut(s) 832, 1105
CaiI CAGNNNCTG 1 cut(s) 1370
CciI TCATGA 1 cut(s) 394
CfoI GCGC 3 cut(s) 761, 806, 1505
Cfr10I RCCGGY 1 cut(s) 1496
Cfr13I GGNCC 4 cut(s) 816, 861, 870, 1132
ClaI ATCGAT 1 cut(s) 979
CseI GACGC 2 cut(s) 779, 785
CsiI ACCWGGT 1 cut(s) 1150
Csp6I GTAC 5 cut(s) 1045, 1393, 1403, 1515, 1639
CspAI ACCGGT 1 cut(s) 1496
CviQI GTAC 5 cut(s) 1045, 1393, 1403, 1515, 1639
DdeI CTNAG 5 cut(s) 159, 271, 836, 1257, 1338
DpnI GATC 9 cut(s) 134, 338, 354, 411, 582, 647, 810, 982, 1489
DpnII GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
EaeI YGGCCR 2 cut(s) 170, 543
Eam1104I CTCTTC 2 cut(s) 518, 786
EarI CTCTTC 2 cut(s) 518, 786
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 4 cut(s) 765, 812, 1074, 1162
Eco147I AGGCCT 1 cut(s) 834
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 1309
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 2 cut(s) 870, 1132
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 3 cut(s) 309, 1065, 1427
Eco91I GGTNACC 1 cut(s) 1231
EcoICRI GAGCTC 1 cut(s) 6
EcoO65I GGTNACC 1 cut(s) 1231
EcoRII CCWGG 4 cut(s) 211, 332, 903, 1150
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 4 cut(s) 765, 812, 1074, 1162
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 4 cut(s) 765, 812, 1074, 1162
Esp3I CGTCTC 1 cut(s) 797
FalI AAGNNNNNCTT 6 cut(s) 49, 81, 948, 980, 1628, 1660
FauNDI CATATG 1 cut(s) 685
FblI GTMKAC 1 cut(s) 1653
Fnu4HI GCNGC 5 cut(s) 54, 690, 762, 1086, 1551
FokI GGATG 6 cut(s) 60, 74, 116, 548, 896, 1643
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 54, 690, 762, 1086, 1551
FspBI CTAG 2 cut(s) 1163, 1424
GlaI GCGC 3 cut(s) 760, 805, 1504
GluI GCNGC 5 cut(s) 54, 690, 762, 1086, 1551
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 7 cut(s) 172, 545, 818, 834, 863, 908, 1176
HapII CCGG 2 cut(s) 69, 1497
HgaI GACGC 2 cut(s) 779, 785
HhaI GCGC 3 cut(s) 761, 806, 1505
Hin6I GCGC 3 cut(s) 759, 804, 1503
HinP1I GCGC 3 cut(s) 759, 804, 1503
HincII GTYRAC 3 cut(s) 250, 343, 1360
HindII GTYRAC 3 cut(s) 250, 343, 1360
HinfI GANTC 7 cut(s) 72, 243, 442, 658, 752, 1224, 1525
HpaII CCGG 2 cut(s) 69, 1497
HphI GGTGA 2 cut(s) 1243, 1370
Hpy166II GTNNAC 5 cut(s) 250, 343, 1117, 1360, 1654
Hpy188I TCNGA 6 cut(s) 10, 242, 274, 556, 1223, 1312
Hpy188III TCNNGA 8 cut(s) 69, 356, 395, 485, 701, 796, 1032, 1529
Hpy8I GTNNAC 5 cut(s) 250, 343, 1117, 1360, 1654
HpyAV CCTTC 8 cut(s) 93, 284, 766, 974, 1228, 1321, 1481, 1621
HpyCH4III ACNGT 8 cut(s) 254, 371, 629, 673, 1009, 1114, 1237, 1279
HpyCH4IV ACGT 1 cut(s) 877
HpyCH4V TGCA 6 cut(s) 29, 56, 194, 315, 598, 632
HpyF10VI GCNNNNNNNGC 9 cut(s) 62, 569, 595, 689, 723, 767, 776, 967, 1085
HpyF3I CTNAG 5 cut(s) 159, 271, 836, 1257, 1338
HpySE526I ACGT 1 cut(s) 877
HspAI GCGC 3 cut(s) 759, 804, 1503
Kpn2I TCCGGA 1 cut(s) 68
Kzo9I GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 5 cut(s) 215, 271, 569, 966, 1286
Lsp1109I GCAGC 5 cut(s) 40, 676, 773, 1097, 1537
LweI GCATC 5 cut(s) 52, 181, 585, 1376, 1514
MabI ACCWGGT 1 cut(s) 1150
MaeI CTAG 2 cut(s) 1163, 1424
MaeII ACGT 1 cut(s) 877
MaeIII GTNAC 5 cut(s) 373, 1029, 1190, 1231, 1341
MalI GATC 9 cut(s) 134, 338, 354, 411, 582, 647, 810, 982, 1489
MboI GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
MboII GAAGA 5 cut(s) 287, 535, 716, 773, 1420
MflI RGATCY 2 cut(s) 409, 645
MhlI GDGCHC 4 cut(s) 8, 574, 963, 1441
MlsI TGGCCA 2 cut(s) 172, 545
MluNI TGGCCA 2 cut(s) 172, 545
MlyI GAGTC 2 cut(s) 436, 1218
Mox20I TGGCCA 2 cut(s) 172, 545
MroI TCCGGA 1 cut(s) 68
MroXI GAANNNNTTC 2 cut(s) 527, 1581
MscI TGGCCA 2 cut(s) 172, 545
MseI TTAA 6 cut(s) 93, 221, 605, 614, 845, 1538
MslI CAYNNNNRTG 3 cut(s) 189, 1199, 1250
Msp20I TGGCCA 2 cut(s) 172, 545
MspI CCGG 2 cut(s) 69, 1497
MspR9I CCNGG 4 cut(s) 213, 334, 905, 1152
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 4 cut(s) 213, 334, 905, 1152
MvnI CGCG 2 cut(s) 310, 639
MwoI GCNNNNNNNGC 9 cut(s) 62, 569, 595, 689, 723, 767, 776, 967, 1085
NcoI CCATGG 2 cut(s) 765, 812
NdeI CATATG 1 cut(s) 685
NdeII GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
NlaIV GGNNCC 6 cut(s) 210, 217, 256, 267, 871, 1438
NmeAIII GCCGAG 1 cut(s) 844
NmuCI GTSAC 5 cut(s) 373, 1029, 1190, 1231, 1341
NspI RCATGY 2 cut(s) 1255, 1399
NspV TTCGAA 2 cut(s) 453, 954
PagI TCATGA 1 cut(s) 394
PceI AGGCCT 1 cut(s) 834
PciI ACATGT 1 cut(s) 1395
PciSI GCTCTTC 1 cut(s) 786
PctI GAATGC 1 cut(s) 442
PdmI GAANNNNTTC 2 cut(s) 527, 1581
PfeI GAWTC 5 cut(s) 72, 243, 658, 752, 1525
PfoI TCCNGGA 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 1496
PkrI GCNGC 5 cut(s) 55, 691, 763, 1087, 1552
PleI GAGTC 2 cut(s) 436, 1218
PpsI GAGTC 2 cut(s) 436, 1218
PscI ACATGT 1 cut(s) 1395
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 4 cut(s) 211, 332, 903, 1150
PspEI GGTNACC 1 cut(s) 1231
PspGI CCWGG 4 cut(s) 211, 332, 903, 1150
PspN4I GGNNCC 6 cut(s) 210, 217, 256, 267, 871, 1438
PspPI GGNCC 4 cut(s) 816, 861, 870, 1132
PstNI CAGNNNCTG 1 cut(s) 1370
PsuI RGATCY 2 cut(s) 409, 645
RsaI GTAC 5 cut(s) 1046, 1394, 1404, 1516, 1640
RsaNI GTAC 5 cut(s) 1045, 1393, 1403, 1515, 1639
RseI CAYNNNNRTG 3 cut(s) 189, 1199, 1250
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 6 cut(s) 93, 221, 605, 614, 845, 1538
SatI GCNGC 5 cut(s) 54, 690, 762, 1086, 1551
Sau3AI GATC 9 cut(s) 132, 336, 352, 409, 580, 645, 808, 980, 1487
Sau96I GGNCC 4 cut(s) 816, 861, 870, 1132
ScaI AGTACT 1 cut(s) 1404
SchI GAGTC 2 cut(s) 436, 1218
ScrFI CCNGG 4 cut(s) 213, 334, 905, 1152
SduI GDGCHC 4 cut(s) 8, 574, 963, 1441
SexAI ACCWGGT 1 cut(s) 1150
SfaNI GCATC 5 cut(s) 52, 181, 585, 1376, 1514
SfcI CTRYAG 1 cut(s) 1039
SfuI TTCGAA 2 cut(s) 453, 954
SinI GGWCC 2 cut(s) 870, 1132
SmiMI CAYNNNNRTG 3 cut(s) 189, 1199, 1250
SmlI CTYRAG 4 cut(s) 429, 699, 794, 1226
SmoI CTYRAG 4 cut(s) 429, 699, 794, 1226
SseBI AGGCCT 1 cut(s) 834
SsiI CCGC 3 cut(s) 144, 639, 1642
SspMI CTAG 2 cut(s) 1163, 1424
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 834
StyD4I CCNGG 4 cut(s) 211, 332, 903, 1150
StyI CCWWGG 4 cut(s) 765, 812, 1074, 1162
TaaI ACNGT 8 cut(s) 254, 371, 629, 673, 1009, 1114, 1237, 1279
TaiI ACGT 1 cut(s) 880
TaqI TCGA 6 cut(s) 125, 453, 954, 979, 996, 1386
TatI WGTACW 2 cut(s) 1392, 1402
TfiI GAWTC 5 cut(s) 72, 243, 658, 752, 1525
Tru1I TTAA 6 cut(s) 93, 221, 605, 614, 845, 1538
Tru9I TTAA 6 cut(s) 93, 221, 605, 614, 845, 1538
TscAI CASTG 6 cut(s) 146, 376, 634, 844, 1098, 1338
TseFI GTSAC 5 cut(s) 373, 1029, 1190, 1231, 1341
TseI GCWGC 5 cut(s) 53, 689, 761, 1085, 1550
Tsp45I GTSAC 5 cut(s) 373, 1029, 1190, 1231, 1341
TspRI CASTG 6 cut(s) 146, 376, 634, 844, 1098, 1338
VpaK11BI GGWCC 2 cut(s) 870, 1132
XapI RAATTY 5 cut(s) 89, 223, 927, 939, 1205
XceI RCATGY 2 cut(s) 1255, 1399
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmaJI CCTAGG 1 cut(s) 1162
XmiI GTMKAC 1 cut(s) 1653
XmnI GAANNNNTTC 2 cut(s) 527, 1581
XspI CTAG 2 cut(s) 1163, 1424
ZrmI AGTACT 1 cut(s) 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.