AT3G21000

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000106
Physical Location & Seq
Forward (+)
7363880 .. 7365391
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21000.1

Sequence Viewer

Length: 1218 bp
ATGGCGACGGCGAATATACGCGACGGCGTTGTTTCCGATCAATTTGACTATGAAATCTGGGCTCCGATCACGAAATCTACACTAATCGAGCAAGGACTTTGGGATGTTGTCGTGAACGGAGTCCCGCAGGATCCATCGAAGAATCCAGAGTTAGCGGCGACGATTCAACCCGAAGAGCTTTCGAAATGGAGAGATTTCGTGGTGAAAGACGCTAAAGCGCTTCAGATCTTGCAATCTTCTCTCACGGATTCTGTTTTCAGGAAGACTCTCTCTGCTTCTTCGGCTAAAGATGTTTGGGATTTGCTTCGAAAAGGTAACGAACAAGCAACGATACGTAGATTAGAACAAGTAACGATACGTCGATTAGAGAAGCAATTAGAAGATCTCAAAATGGTTGACAAAGAATCTGGCAGTTCCTACTTGGATAAGGCTTTGGAAATCCTTGAACGATTGGGCCGTGCGAAACTTGAGAAATCTGATTACGAGATTTGCAAGAATGTGTTCACGACACTCTCTGGGTCATTCGATGGTCTAGATTCAATGTTGGAGGAACTCATTGATGTTCATAAGATGACTAGTAAGAGTCTTGTTGAGTATTTTTACTATCGTGTACATGAATCATCGACAGAGGAAGCTATCTTTGGACTATTGAAGGATTTGAGGCTTAAATCAAAGTCTGAGAAGTGGTGTGGCTTGTGCTACAAGAACAATCACAACCAAGAAGACTGCAAATTTAGGATTCATACAGATAAGGAGGAGAAAGAAGATGAAATCGTAGTTGATTATCGTCTGGAAACGGTACCAAATTTAGGGGCAAAAACATATGATGATGATATTTGGATAATACACAAGATGGCCCCGATTAACATGACTCCATATGTGAAGTATTTCACCACTCTAGACAGGACATTCAAAGCTACGGTTGGAACGGTCGATGGAACAGTTCTTTTGGTTGAAGGAAAAGGAGATGTTAAGATCAGGATGAAGGAAGGGAAGAAGAAGACGATCAGGAATGTGATTTTTGTTCCCGGGCTCAACAGAAACGTGTTGAGTTTTGGTAAGATGGTATCAAAACGCTACTCAATCTCAACGGGAATGCAAGGCGAATGCATTGTCTGCGATCGGGGTGAGAATAAATTGGGGGATGCTATGTGGATGACGGATGAAACAGAGATGGCTTTGCGTTTGAAGGTGATTGAAGGTAAACTCACATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 rve

Protein Analysis

405

Amino Acids

46.32

Weight (kDa)

5.94

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 25 - 186 4.6e-15 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 280 - 360 2.6e-16 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 799
AccB1I GGYRCC 1 cut(s) 799
AccII CGCG 1 cut(s) 21
AciI CCGC 2 cut(s) 125, 155
AclWI GGATC 2 cut(s) 125, 138
AcsI RAATTY 2 cut(s) 731, 805
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 2 cut(s) 612, 801
AfeI AGCGCT 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 809
AflIII ACRYGT 1 cut(s) 1044
AgsI TTSAA 8 cut(s) 167, 446, 540, 652, 913, 956, 1189, 1199
AhlI ACTAGT 1 cut(s) 575
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 3 cut(s) 178, 635, 917
AluI AGCT 3 cut(s) 178, 635, 917
AlwI GGATC 2 cut(s) 125, 138
Ama87I CYCGRG 1 cut(s) 1028
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 2 cut(s) 454, 855
ApoI RAATTY 2 cut(s) 731, 805
ArsI GACNNNNNNTTYG 2 cut(s) 1098, 1130
Asp700I GAANNNNTTC 2 cut(s) 500, 887
Asp718I GGTACC 1 cut(s) 799
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 454, 856
AsuC2I CCSGG 2 cut(s) 1029, 1030
AsuHPI GGTGA 4 cut(s) 214, 883, 1139, 1204
AsuII TTCGAA 2 cut(s) 182, 307
AvaI CYCGRG 1 cut(s) 1028
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 799
BanII GRGCYC 2 cut(s) 64, 1035
BbsI GAAGAC 3 cut(s) 269, 729, 1007
BccI CCATC 6 cut(s) 142, 521, 847, 929, 1057, 1168
BceAI ACGGC 3 cut(s) 24, 40, 441
BcnI CCSGG 2 cut(s) 1029, 1030
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 3 cut(s) 533, 576, 899
BfoI RGCGCY 1 cut(s) 221
BglII AGATCT 2 cut(s) 225, 382
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 1029, 1030
BmeT110I CYCGRG 1 cut(s) 1028
BmgT120I GGNCC 2 cut(s) 454, 856
BmiI GGNNCC 4 cut(s) 63, 132, 801, 858
BmrFI CCNGG 2 cut(s) 1029, 1030
BmsI GCATC 1 cut(s) 1135
BpiI GAAGAC 3 cut(s) 269, 729, 1007
Bpu14I TTCGAA 2 cut(s) 182, 307
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 2 cut(s) 1029, 1030
BsaAI YACGTR 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 1028
Bsc4I CCNNNNNNNGG 1 cut(s) 809
BseDI CCNNGG 1 cut(s) 1028
BseGI GGATG 5 cut(s) 109, 987, 1150, 1161, 1168
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMII CTCAG 1 cut(s) 669
BseRI GAGGAG 1 cut(s) 770
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 2 cut(s) 933, 1123
BshFI GGCC 2 cut(s) 456, 857
BshNI GGYRCC 1 cut(s) 799
BsiEI CGRYCG 2 cut(s) 933, 1123
BsiHKCI CYCGRG 1 cut(s) 1028
BsiSI CCGG 1 cut(s) 1029
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 2 cut(s) 1101, 1112
BsnI GGCC 2 cut(s) 456, 857
BsoBI CYCGRG 1 cut(s) 1028
Bsp119I TTCGAA 2 cut(s) 182, 307
Bsp1286I GDGCHC 2 cut(s) 64, 1035
Bsp1407I TGTACA 1 cut(s) 610
Bsp143I GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
BspACI CCGC 2 cut(s) 125, 155
BspANI GGCC 2 cut(s) 456, 857
BspCNI CTCAG 1 cut(s) 670
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 4 cut(s) 63, 132, 801, 858
BspPI GGATC 2 cut(s) 125, 138
BspQI GCTCTTC 1 cut(s) 168
BspT104I TTCGAA 2 cut(s) 182, 307
BspT107I GGYRCC 1 cut(s) 799
BsrGI TGTACA 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 1028
BssMI GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
Bst4CI ACNGT 4 cut(s) 799, 922, 931, 943
Bst6I CTCTTC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 1116
BstAUI TGTACA 1 cut(s) 610
BstBAI YACGTR 1 cut(s) 335
BstBI TTCGAA 2 cut(s) 182, 307
BstDEI CTNAG 1 cut(s) 678
BstF5I GGATG 5 cut(s) 109, 987, 1150, 1161, 1168
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 8 cut(s) 40, 69, 133, 228, 385, 978, 1008, 1123
BstMBI GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
BstMCI CGRYCG 2 cut(s) 933, 1123
BstMWI GCNNNNNNNGC 2 cut(s) 281, 1116
BstSCI CCNGG 2 cut(s) 1027, 1028
BstSNI TACGTA 1 cut(s) 335
BstUI CGCG 1 cut(s) 21
BstV2I GAAGAC 3 cut(s) 269, 729, 1007
BstX2I RGATCY 3 cut(s) 130, 225, 382
BstYI RGATCY 3 cut(s) 130, 225, 382
BsuRI GGCC 2 cut(s) 456, 857
BtsCI GGATG 5 cut(s) 109, 987, 1150, 1161, 1168
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 454, 856
Cfr9I CCCGGG 1 cut(s) 1028
CseI GACGC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 611, 800
CviAII CATG 2 cut(s) 614, 868
CviQI GTAC 2 cut(s) 611, 800
DdeI CTNAG 1 cut(s) 678
DpnI GATC 8 cut(s) 39, 68, 132, 227, 384, 977, 1007, 1122
DpnII GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco105I TACGTA 1 cut(s) 335
Eco24I GRGCYC 2 cut(s) 64, 1035
Eco47III AGCGCT 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 1028
EcoT22I ATGCAT 1 cut(s) 1112
EcoT38I GRGCYC 2 cut(s) 64, 1035
FaeI CATG 2 cut(s) 617, 871
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 613, 867
FauI CCCGC 1 cut(s) 132
FauNDI CATATG 2 cut(s) 823, 877
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 5 cut(s) 116, 994, 1157, 1168, 1175
FriOI GRGCYC 2 cut(s) 64, 1035
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 533, 576, 899
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 2 cut(s) 456, 857
HapII CCGG 1 cut(s) 1029
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 617, 871
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HpaII CCGG 1 cut(s) 1029
HphI GGTGA 4 cut(s) 214, 883, 1139, 1204
Hpy166II GTNNAC 5 cut(s) 115, 397, 504, 611, 1205
Hpy188I TCNGA 5 cut(s) 37, 66, 225, 478, 679
Hpy8I GTNNAC 5 cut(s) 115, 397, 504, 611, 1205
Hpy99I CGWCG 4 cut(s) 10, 26, 163, 363
HpyAV CCTTC 6 cut(s) 646, 950, 979, 983, 1183, 1193
HpyCH4III ACNGT 4 cut(s) 799, 922, 931, 943
HpyCH4IV ACGT 3 cut(s) 334, 358, 1044
HpyCH4V TGCA 5 cut(s) 232, 492, 729, 1099, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 1116
HpyF3I CTNAG 1 cut(s) 678
HpySE526I ACGT 3 cut(s) 334, 358, 1044
Hsp92II CATG 2 cut(s) 617, 871
HspAI GCGC 1 cut(s) 218
KpnI GGTACC 1 cut(s) 803
Kzo9I GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 67
LweI GCATC 1 cut(s) 1135
MaeI CTAG 3 cut(s) 533, 576, 899
MaeII ACGT 3 cut(s) 334, 358, 1044
MaeIII GTNAC 2 cut(s) 314, 349
MalI GATC 8 cut(s) 39, 68, 132, 227, 384, 977, 1007, 1122
MboI GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
MflI RGATCY 3 cut(s) 130, 225, 382
MhlI GDGCHC 2 cut(s) 64, 1035
MluCI AATT 5 cut(s) 41, 374, 731, 805, 1136
MlyI GAGTC 4 cut(s) 129, 259, 592, 865
MmeI TCCRAC 2 cut(s) 525, 904
MnlI CCTC 4 cut(s) 541, 622, 654, 748
Mph1103I ATGCAT 1 cut(s) 1112
MroXI GAANNNNTTC 2 cut(s) 500, 887
MseI TTAA 4 cut(s) 666, 864, 972, 1216
MspI CCGG 1 cut(s) 1029
MspR9I CCNGG 2 cut(s) 1029, 1030
Mva1269I GAATGC 2 cut(s) 1101, 1112
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 281, 1116
NciI CCSGG 2 cut(s) 1029, 1030
NdeI CATATG 2 cut(s) 823, 877
NdeII GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
NlaIII CATG 2 cut(s) 617, 871
NlaIV GGNNCC 4 cut(s) 63, 132, 801, 858
NsiI ATGCAT 1 cut(s) 1112
NspV TTCGAA 2 cut(s) 182, 307
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 454
PctI GAATGC 2 cut(s) 1101, 1112
PdmI GAANNNNTTC 2 cut(s) 500, 887
PfeI GAWTC 7 cut(s) 142, 163, 248, 404, 536, 617, 739
PkrI GCNGC 1 cut(s) 157
Ple19I CGATCG 1 cut(s) 1123
PleI GAGTC 4 cut(s) 128, 259, 591, 865
PpsI GAGTC 4 cut(s) 128, 259, 591, 865
Ppu21I YACGTR 1 cut(s) 335
PspN4I GGNNCC 4 cut(s) 63, 132, 801, 858
PspPI GGNCC 2 cut(s) 454, 856
PsuI RGATCY 3 cut(s) 130, 225, 382
PvuI CGATCG 1 cut(s) 1123
RsaI GTAC 2 cut(s) 612, 801
RsaNI GTAC 2 cut(s) 611, 800
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 4 cut(s) 666, 864, 972, 1216
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 8 cut(s) 37, 66, 130, 225, 382, 975, 1005, 1120
Sau96I GGNCC 2 cut(s) 454, 856
SchI GAGTC 4 cut(s) 129, 259, 592, 865
ScrFI CCNGG 2 cut(s) 1029, 1030
SduI GDGCHC 2 cut(s) 64, 1035
SetI ASST 9 cut(s) 180, 316, 337, 361, 637, 919, 1047, 1194, 1204
SfaNI GCATC 1 cut(s) 1135
SfuI TTCGAA 2 cut(s) 182, 307
SmaI CCCGGG 1 cut(s) 1030
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SnaBI TACGTA 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 5 cut(s) 41, 374, 731, 805, 1136
SsiI CCGC 2 cut(s) 125, 155
SspMI CTAG 3 cut(s) 533, 576, 899
StyD4I CCNGG 2 cut(s) 1027, 1028
TaaI ACNGT 4 cut(s) 799, 922, 931, 943
TaiI ACGT 3 cut(s) 337, 361, 1047
TaqI TCGA 8 cut(s) 87, 137, 182, 307, 361, 525, 623, 933
TasI AATT 5 cut(s) 41, 374, 731, 805, 1136
TatI WGTACW 1 cut(s) 610
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 7 cut(s) 142, 163, 248, 404, 536, 617, 739
Tru1I TTAA 4 cut(s) 666, 864, 972, 1216
Tru9I TTAA 4 cut(s) 666, 864, 972, 1216
TspDTI ATGAA 7 cut(s) 66, 554, 630, 731, 783, 998, 1179
TspGWI ACGGA 3 cut(s) 132, 260, 1175
TspMI CCCGGG 1 cut(s) 1028
XapI RAATTY 2 cut(s) 731, 805
XbaI TCTAGA 2 cut(s) 532, 898
XmaI CCCGGG 1 cut(s) 1028
XmnI GAANNNNTTC 2 cut(s) 500, 887
XspI CTAG 3 cut(s) 533, 576, 899
Zsp2I ATGCAT 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.