Rorug06G0490600

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
60877441 .. 60879583
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0490600.1

Sequence Viewer

Length: 1275 bp
ATGGGGAGAGCTCCTTGTTGTGACAAAACGAACGTGAAGAGAGGGCCGTGGTCACCTGAAGAAGATTCCAAGCTCAAGTCGTATATTGAACTACACGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAGATCGGGCTTAAGAGATGTGGGAAGAGCTGCCGGCTGAGATGGTTAAACTATCTGCGCCCGAACATCAAGCATGGAGGGTTTTCTGAAGAAGAGGACAACTTAATTTGCAGCCTCTATATAAGTATTGGAAGCAGTTTGGATACTCGGTATACCTATGTATATAGGTGGTCTATAATTGCAGCACAACTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTTCTGGGAAAGCACCGCAAGGAACACCAGGCTGCTGCGCGTAGATCCGCTGCAGGTCTAAAACAGCAAGAAATTATCAAAAGAGGTCTCATCATCAGTAGTAGTAGTGGGAACAATAATTCCATGGTGAATCCTGTGGCAGCAGCTAGCCAATACCCTTACTGGCCCGAGCTACCGGTGCTCCAAGTACCATCGATACCCAATTACTCATCACCAAACCAAGAAGTAGTAGTACCTTCTTTCAATGACCACGCGTCTATCCGAAAACTGCTTATCAAGCTCGGAGGAAGATTTCATTCAGATCATCACGACAATGTTGCTCAACCTAATATCCAAGATGTGTACTCCTCGAATGGCGATATTCAACTCCCAGTTGATCAATTTCCTAGCTCAACGCAACAGATTTATCACGAGGAGTCGGCAGCCAATATGCACTCATCTGCTAGCCTGATTGCGGCTTTAGCCAGTAACAATATCAGCAACCCGGGCCAATTTGCACAGATGAACCATTACAACAACCCCGCGGATAATGCTGGATATGGTGGTGCTGTGAACATGTTTCAAGGAGGGCAAAGTAGTAACTATTTTCTGTCGAACGAGCTTAAGGACATGGTGTACAATATTGATCCAGAAAAGTTAGATGGGCTGGAATTCTTATACAGTGAAGACGTCATGATCATGATGAATGATAGACCGATTAGCAGTACTACTAATACTATTACTAGTTATGGTGATCAAAGTACGATTGGGTGGAGTGGTGATCAGATGCAGCTGGTTTATCCTCCTCCTCTAGCTGCCTCAGGTTCAGACTATCATGAAGGCATGCAGAGAATGATAATGCCTCAAGATCAATGCGCTAATCTCAGCGGTAGTTACCCTGGGGATGGGGTACAATAA

Protein Analysis

424

Amino Acids

47.1

Weight (kDa)

6.64

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 6.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2.1e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 122 1.4e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1050
Acc36I ACCTGC 1 cut(s) 422
AccI GTMKAC 1 cut(s) 281
AccII CGCG 3 cut(s) 418, 632, 902
AciI CCGC 6 cut(s) 394, 426, 833, 900, 902, 1245
AclWI GGATC 2 cut(s) 417, 998
AcsI RAATTY 1 cut(s) 1028
AcuI CTGAAG 3 cut(s) 78, 237, 389
AcyI GRCGYC 1 cut(s) 1047
AfaI GTAC 7 cut(s) 567, 612, 722, 995, 1084, 1120, 1269
AfiI CCNNNNNNNGG 2 cut(s) 832, 1262
AflII CTTAAG 2 cut(s) 140, 980
AflIII ACRYGT 2 cut(s) 630, 933
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 4 cut(s) 89, 622, 743, 941
AhdI GACNNNNNGTC 1 cut(s) 631
AhlI ACTAGT 1 cut(s) 1100
AjnI CCWGG 3 cut(s) 322, 405, 1255
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
Alw21I GWGCWC 2 cut(s) 13, 561
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 2 cut(s) 417, 998
Ama87I CYCGRG 2 cut(s) 545, 862
AoxI GGCC 3 cut(s) 44, 542, 865
ApoI RAATTY 1 cut(s) 1028
AsiGI ACCGGT 1 cut(s) 553
AspLEI GCGC 3 cut(s) 189, 418, 1235
AspS9I GGNCC 3 cut(s) 44, 543, 865
AsuC2I CCSGG 2 cut(s) 863, 864
AsuHPI GGTGA 5 cut(s) 45, 517, 582, 1121, 1148
AsuNHI GCTAGC 2 cut(s) 524, 821
AvaI CYCGRG 2 cut(s) 545, 862
AxyI CCTNAGG 1 cut(s) 1177
BanII GRGCYC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BauI CACGAG 1 cut(s) 788
BbsI GAAGAC 1 cut(s) 1050
Bbv12I GWGCWC 2 cut(s) 13, 561
BccI CCATC 4 cut(s) 165, 577, 1013, 1256
BceAI ACGGC 2 cut(s) 31, 112
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 3 cut(s) 324, 407, 1257
BciVI GTATCC 1 cut(s) 265
BclI TGATCA 4 cut(s) 754, 1053, 1111, 1138
BcnI CCSGG 2 cut(s) 863, 864
BcoDI GTCTC 1 cut(s) 470
BcuI ACTAGT 1 cut(s) 1100
BfaI CTAG 5 cut(s) 525, 765, 822, 1101, 1169
BfmI CTRYAG 1 cut(s) 429
BfrI CTTAAG 2 cut(s) 140, 980
BfuAI ACCTGC 1 cut(s) 422
BfuI GTATCC 1 cut(s) 265
BmcAI AGTACT 1 cut(s) 1084
Bme1390I CCNGG 5 cut(s) 324, 407, 863, 864, 1257
BmeRI GACNNNNNGTC 1 cut(s) 631
BmeT110I CYCGRG 2 cut(s) 545, 862
BmgT120I GGNCC 3 cut(s) 44, 543, 865
BmrFI CCNGG 5 cut(s) 324, 407, 863, 864, 1257
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 1 cut(s) 1134
BmtI GCTAGC 2 cut(s) 528, 825
BmuI ACTGGG 1 cut(s) 743
BpiI GAAGAC 1 cut(s) 1050
BpuEI CTTGAG 2 cut(s) 59, 1206
BpuMI CCSGG 2 cut(s) 863, 864
Bsa29I ATCGAT 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 6 cut(s) 47, 501, 862, 900, 1255, 1256
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 832, 1262
Bse118I RCCGGY 2 cut(s) 162, 553
Bse1I ACTGG 6 cut(s) 106, 116, 359, 545, 749, 843
Bse21I CCTNAGG 1 cut(s) 1177
BseBI CCWGG 3 cut(s) 324, 407, 1257
BseCI ATCGAT 1 cut(s) 572
BseDI CCNNGG 6 cut(s) 47, 501, 862, 900, 1255, 1256
BseGI GGATG 1 cut(s) 1267
BseLI CCNNNNNNNGG 2 cut(s) 832, 1262
BseMII CTCAG 3 cut(s) 158, 1191, 1255
BseNI ACTGG 6 cut(s) 106, 116, 359, 545, 749, 843
BseRI GAGGAG 4 cut(s) 715, 806, 1152, 1155
Bsh1236I CGCG 3 cut(s) 418, 632, 902
BshFI GGCC 3 cut(s) 46, 544, 867
BshTI ACCGGT 1 cut(s) 553
BshVI ATCGAT 1 cut(s) 572
BsiHKAI GWGCWC 2 cut(s) 13, 561
BsiHKCI CYCGRG 2 cut(s) 545, 862
BsiSI CCGG 3 cut(s) 163, 554, 863
BslI CCNNNNNNNGG 2 cut(s) 832, 1262
BsmAI GTCTC 1 cut(s) 470
BsnI GGCC 3 cut(s) 46, 544, 867
Bso31I GGTCTC 1 cut(s) 470
BsoBI CYCGRG 2 cut(s) 545, 862
Bsp1286I GDGCHC 2 cut(s) 13, 561
Bsp1407I TGTACA 1 cut(s) 993
Bsp143I GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 6 cut(s) 394, 426, 833, 900, 902, 1245
BspANI GGCC 3 cut(s) 46, 544, 867
BspCNI CTCAG 3 cut(s) 159, 1190, 1254
BspDI ATCGAT 1 cut(s) 572
BspFNI CGCG 3 cut(s) 418, 632, 902
BspHI TCATGA 3 cut(s) 1050, 1056, 1192
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 422
BspOI GCTAGC 2 cut(s) 528, 825
BspPI GGATC 2 cut(s) 417, 998
BspQI GCTCTTC 1 cut(s) 149
BspTI CTTAAG 2 cut(s) 140, 980
BspTNI GGTCTC 1 cut(s) 470
BsrFI RCCGGY 2 cut(s) 162, 553
BsrGI TGTACA 1 cut(s) 993
BsrI ACTGG 6 cut(s) 106, 116, 359, 545, 749, 843
BssAI RCCGGY 2 cut(s) 162, 553
BssECI CCNNGG 6 cut(s) 47, 501, 862, 900, 1255, 1256
BssMI GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
BssNAI GTATAC 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 1047
BssSI CACGAG 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 501
Bst1107I GTATAC 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 788
Bst2UI CCWGG 3 cut(s) 324, 407, 1257
Bst4CI ACNGT 1 cut(s) 1040
Bst6I CTCTTC 3 cut(s) 32, 149, 216
BstACI GRCGYC 1 cut(s) 1047
BstAFI CTTAAG 2 cut(s) 140, 980
BstAUI TGTACA 1 cut(s) 993
BstC8I GCNNGC 4 cut(s) 164, 526, 823, 1202
BstDEI CTNAG 3 cut(s) 167, 1177, 1241
BstDSI CCRYGG 3 cut(s) 47, 501, 900
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 1267
BstFNI CGCG 3 cut(s) 418, 632, 902
BstHHI GCGC 3 cut(s) 189, 418, 1235
BstKTI GATC 9 cut(s) 135, 425, 682, 757, 1006, 1056, 1114, 1141, 1228
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
BstMWI GCNNNNNNNGC 5 cut(s) 556, 655, 839, 864, 908
BstNI CCWGG 3 cut(s) 324, 407, 1257
BstNSI RCATGY 2 cut(s) 937, 1204
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 5 cut(s) 322, 405, 861, 862, 1255
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 3 cut(s) 418, 632, 902
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BstZ17I GTATAC 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 572
Bsu36I CCTNAGG 1 cut(s) 1177
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 3 cut(s) 46, 544, 867
BsuTUI ATCGAT 1 cut(s) 572
BtgI CCRYGG 3 cut(s) 47, 501, 900
BtsCI GGATG 1 cut(s) 1267
BtsIMutI CAGTG 2 cut(s) 99, 1045
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 4 cut(s) 164, 526, 823, 1202
CciI TCATGA 3 cut(s) 1050, 1056, 1192
CfoI GCGC 3 cut(s) 189, 418, 1235
Cfr10I RCCGGY 2 cut(s) 162, 553
Cfr13I GGNCC 3 cut(s) 44, 543, 865
Cfr42I CCGCGG 1 cut(s) 903
Cfr9I CCCGGG 1 cut(s) 862
ClaI ATCGAT 1 cut(s) 572
CseI GACGC 1 cut(s) 621
Csp6I GTAC 7 cut(s) 566, 611, 721, 994, 1083, 1119, 1268
CspAI ACCGGT 1 cut(s) 553
CviAII CATG 8 cut(s) 203, 502, 934, 988, 1051, 1057, 1193, 1201
CviQI GTAC 7 cut(s) 566, 611, 721, 994, 1083, 1119, 1268
DdeI CTNAG 3 cut(s) 167, 1177, 1241
DpnI GATC 9 cut(s) 134, 424, 681, 756, 1005, 1055, 1113, 1140, 1227
DpnII GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
DriI GACNNNNNGTC 1 cut(s) 631
Eam1104I CTCTTC 3 cut(s) 32, 149, 216
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 3 cut(s) 32, 149, 216
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 470
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 78, 237, 389
Eco81I CCTNAGG 1 cut(s) 1177
Eco88I CYCGRG 2 cut(s) 545, 862
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 1028
EcoRII CCWGG 3 cut(s) 322, 405, 1255
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 8 cut(s) 206, 505, 937, 991, 1054, 1060, 1196, 1204
FatI CATG 8 cut(s) 202, 501, 933, 987, 1050, 1056, 1192, 1200
FauI CCCGC 1 cut(s) 907
FbaI TGATCA 4 cut(s) 754, 1053, 1111, 1138
FblI GTMKAC 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 13
FspBI CTAG 5 cut(s) 525, 765, 822, 1101, 1169
GlaI GCGC 3 cut(s) 188, 417, 1234
HaeIII GGCC 3 cut(s) 46, 544, 867
HapII CCGG 3 cut(s) 163, 554, 863
HgaI GACGC 1 cut(s) 621
HhaI GCGC 3 cut(s) 189, 418, 1235
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 8 cut(s) 206, 505, 937, 991, 1054, 1060, 1196, 1204
Hin6I GCGC 3 cut(s) 187, 416, 1233
HinP1I GCGC 3 cut(s) 187, 416, 1233
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 65, 508, 794
HpaII CCGG 3 cut(s) 163, 554, 863
HphI GGTGA 5 cut(s) 45, 517, 582, 1121, 1148
Hpy166II GTNNAC 4 cut(s) 282, 721, 931, 994
Hpy188I TCNGA 6 cut(s) 217, 641, 662, 679, 1143, 1186
Hpy188III TCNNGA 7 cut(s) 686, 788, 1007, 1051, 1057, 1193, 1223
Hpy8I GTNNAC 4 cut(s) 282, 721, 931, 994
HpyAV CCTTC 2 cut(s) 624, 1190
HpyCH4III ACNGT 1 cut(s) 1040
HpyCH4IV ACGT 2 cut(s) 33, 1047
HpyCH4V TGCA 7 cut(s) 240, 311, 431, 811, 875, 1147, 1204
HpyF10VI GCNNNNNNNGC 5 cut(s) 556, 655, 839, 864, 908
HpyF3I CTNAG 3 cut(s) 167, 1177, 1241
HpySE526I ACGT 2 cut(s) 33, 1047
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 8 cut(s) 206, 505, 937, 991, 1054, 1060, 1196, 1204
HspAI GCGC 3 cut(s) 187, 416, 1233
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
Ksp22I TGATCA 4 cut(s) 754, 1053, 1111, 1138
KspI CCGCGG 1 cut(s) 903
Kzo9I GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 16, 564
LweI GCATC 1 cut(s) 1134
MaeI CTAG 5 cut(s) 525, 765, 822, 1101, 1169
MaeII ACGT 2 cut(s) 33, 1047
MaeIII GTNAC 6 cut(s) 20, 51, 107, 845, 956, 1250
MalI GATC 9 cut(s) 134, 424, 681, 756, 1005, 1055, 1113, 1140, 1227
MboI GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 2 cut(s) 13, 561
MluCI AATT 8 cut(s) 234, 306, 450, 496, 580, 758, 869, 1028
MluI ACGCGT 1 cut(s) 630
MlyI GAGTC 1 cut(s) 803
MroNI GCCGGC 1 cut(s) 162
MseI TTAA 4 cut(s) 141, 176, 233, 981
MslI CAYNNNNRTG 2 cut(s) 690, 1055
MspA1I CMGCKG 4 cut(s) 428, 902, 1150, 1245
MspCI CTTAAG 2 cut(s) 140, 980
MspI CCGG 3 cut(s) 163, 554, 863
MspR9I CCNGG 5 cut(s) 324, 407, 863, 864, 1257
MvaI CCWGG 3 cut(s) 324, 407, 1257
MvnI CGCG 3 cut(s) 418, 632, 902
MwoI GCNNNNNNNGC 5 cut(s) 556, 655, 839, 864, 908
NaeI GCCGGC 1 cut(s) 164
NciI CCSGG 2 cut(s) 863, 864
NcoI CCATGG 1 cut(s) 501
NdeII GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
NgoMIV GCCGGC 1 cut(s) 162
NheI GCTAGC 2 cut(s) 524, 821
NlaIII CATG 8 cut(s) 206, 505, 937, 991, 1054, 1060, 1196, 1204
NmuCI GTSAC 2 cut(s) 20, 51
NspI RCATGY 2 cut(s) 937, 1204
PaeI GCATGC 1 cut(s) 1204
PagI TCATGA 3 cut(s) 1050, 1056, 1192
PasI CCCWGGG 1 cut(s) 1256
PciI ACATGT 1 cut(s) 933
PciSI GCTCTTC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 65, 508
PinAI ACCGGT 1 cut(s) 553
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
PscI ACATGT 1 cut(s) 933
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 322, 405, 1255
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 3 cut(s) 322, 405, 1255
PspPI GGNCC 3 cut(s) 44, 543, 865
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 1150
RsaI GTAC 7 cut(s) 567, 612, 722, 995, 1084, 1120, 1269
RsaNI GTAC 7 cut(s) 566, 611, 721, 994, 1083, 1119, 1268
RseI CAYNNNNRTG 2 cut(s) 690, 1055
SacI GAGCTC 1 cut(s) 13
SacII CCGCGG 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 4 cut(s) 141, 176, 233, 981
Sau3AI GATC 9 cut(s) 132, 422, 679, 754, 1003, 1053, 1111, 1138, 1225
Sau96I GGNCC 3 cut(s) 44, 543, 865
ScaI AGTACT 1 cut(s) 1084
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 5 cut(s) 324, 407, 863, 864, 1257
SduI GDGCHC 2 cut(s) 13, 561
SfaNI GCATC 1 cut(s) 1134
SfcI CTRYAG 1 cut(s) 429
Sfr303I CCGCGG 1 cut(s) 903
SgrBI CCGCGG 1 cut(s) 903
SmaI CCCGGG 1 cut(s) 864
SmiMI CAYNNNNRTG 2 cut(s) 690, 1055
SmlI CTYRAG 4 cut(s) 74, 140, 980, 1221
SmoI CTYRAG 4 cut(s) 74, 140, 980, 1221
SpeI ACTAGT 1 cut(s) 1100
SphI GCATGC 1 cut(s) 1204
Sse9I AATT 8 cut(s) 234, 306, 450, 496, 580, 758, 869, 1028
SsiI CCGC 6 cut(s) 394, 426, 833, 900, 902, 1245
SspI AATATT 1 cut(s) 1000
SspMI CTAG 5 cut(s) 525, 765, 822, 1101, 1169
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 5 cut(s) 322, 405, 861, 862, 1255
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 1040
TaiI ACGT 2 cut(s) 36, 1050
TaqI TCGA 3 cut(s) 572, 728, 971
TaqII GACCGA 1 cut(s) 1087
TasI AATT 8 cut(s) 234, 306, 450, 496, 580, 758, 869, 1028
TatI WGTACW 3 cut(s) 720, 993, 1082
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 2 cut(s) 65, 508
Tru1I TTAA 4 cut(s) 141, 176, 233, 981
Tru9I TTAA 4 cut(s) 141, 176, 233, 981
TscAI CASTG 2 cut(s) 106, 1045
TseFI GTSAC 2 cut(s) 20, 51
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 4 cut(s) 662, 896, 1076, 1209
TspMI CCCGGG 1 cut(s) 862
TspRI CASTG 2 cut(s) 106, 1045
Vha464I CTTAAG 2 cut(s) 140, 980
XapI RAATTY 1 cut(s) 1028
XceI RCATGY 2 cut(s) 937, 1204
XmaI CCCGGG 1 cut(s) 862
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 5 cut(s) 525, 765, 822, 1101, 1169
ZraI GACGTC 1 cut(s) 1048
ZrmI AGTACT 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.