MD09G1165800.v1.1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000106
Physical Location & Seq
Reverse (-)
13562373 .. 13564269
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1165800.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGACAGACAATCCAACACCCAACGCCAACAACCCTAGTATGGATTTATCACATCCATACTATGTTCATCCTTCAGATCACCCTGGCCATGTACTTGTTTCTGAAAAATTGAATGGCACCAATTATTCCTCCTGGAGCAAGTCTATGCTTCATGCCTTACGAGCCAAAAATAAAATTGGATTCATTGATGGATCCATTACACCCCCTCCCGAAGATTACAAACCAGGTGATTATGCCCTATGGGCACGCTGCAACAGCATGATCCTATCATGGATTTCGAATTCGGTAGAGTCTCATCTCTCGACCGGAGTTGTCCATGCCAAATCTGCATACACGATTTGGGAGGATTTCAAGCATCAATTTTCCCAGCAAAACACACCAACCATTTACCAAATCCAGAAACAGATTGCTTCTCTATCACAAGGCTCCCTCACCGTCTCAACGTACTTTACAGAACTTAAGCATCTCTGGACTCAACTCGATGCATATGAAGACCCCATCATCTGCAACCTGATGGATAAGCATCATGAGCAACGAGAAAAATACCGACTTATGCAATTTCTTATGGGCCTTAACGATGTTCATGACACCGTTCGCACCAGCATTCTCATGATGACGCCATTGCCCAATATTCATCAAGCTTATTCCTTTGTCAGCAATCACGAGCAACAACGCCAGTTGACGTCGGAACAACGCCAACCATTGCCATCAGATAATTTTTCCCTTGCTGCCGCAGCACAAACCCGTTCTGATCAACGCTGTGATCATTGCAACCGAGAGGGACACACCATCGATAATTGCCGCACTCTAAAATACCATTGCAATTTTTGTGACAAAAGAGGACATACAGAGGACAGGTGCAAAATCAAGAATGGCACGTGGGTGCCTCATCCCACTGGAGGAAATGGCAATACAAAAGGTCGCAAGCAAAGAGGCAATTCTTCTTCACGTCCTTTGCATGCCGCCCATGCAACGGAAACCACGTCAAGTCTTCAAGGGCCATCCATGCCGCAACCAACATATCCTTCTGCATCCACCAGTACCAATCCGTTGAGTGCACTCTCTGCGGATCAAATTCAACAGTTGACTCATGCTCTCTCCTTGCTTTCTTCTGGTAATGGGAACGCTTATGCAAATGCCGCAGGACTTGGCTTCAGGGAAGATGATTGGTTCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3 Retrotrans_gag

Protein Analysis

393

Amino Acids

43.91

Weight (kDa)

7.08

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 23 - 70 4.9e-21 gag-polypeptide of LTR copia-type
Retrotrans_gag PF03732 89 - 192 6.4e-09 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 686
AccB1I GGYRCC 2 cut(s) 116, 883
AciI CCGC 6 cut(s) 732, 802, 963, 1010, 1067, 1140
AclWI GGATC 4 cut(s) 186, 199, 256, 1077
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 2 cut(s) 280, 1074
AcuI CTGAAG 2 cut(s) 57, 1138
AcvI CACGTG 1 cut(s) 879
AcyI GRCGYC 2 cut(s) 617, 683
AfaI GTAC 3 cut(s) 93, 446, 1042
AfiI CCNNNNNNNGG 3 cut(s) 40, 899, 973
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 4 cut(s) 112, 352, 995, 1079
AjiI CACGTC 2 cut(s) 950, 984
AjnI CCWGG 3 cut(s) 82, 131, 223
AjuI GAANNNNNNNTTGG 2 cut(s) 1009, 1041
AleI CACNNNNGTG 1 cut(s) 881
AluBI AGCT 1 cut(s) 641
AluI AGCT 1 cut(s) 641
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 2 cut(s) 297, 442
Alw44I GTGCAC 1 cut(s) 1056
AlwI GGATC 4 cut(s) 186, 199, 256, 1077
AoxI GGCC 3 cut(s) 85, 568, 998
ApaLI GTGCAC 1 cut(s) 1056
ApeKI GCWGC 3 cut(s) 249, 728, 734
ApoI RAATTY 2 cut(s) 280, 1074
AspS9I GGNCC 2 cut(s) 568, 998
AsuHPI GGTGA 3 cut(s) 71, 239, 424
AsuII TTCGAA 1 cut(s) 278
BaeGI GKGCMC 2 cut(s) 247, 1060
BalI TGGCCA 1 cut(s) 87
BamHI GGATCC 1 cut(s) 191
BanI GGYRCC 2 cut(s) 116, 883
BauI CACGAG 1 cut(s) 662
BbrPI CACGTG 1 cut(s) 879
BbsI GAAGAC 2 cut(s) 498, 983
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 3 cut(s) 236, 715, 746
BccI CCATC 6 cut(s) 182, 506, 508, 715, 797, 1009
BciT130I CCWGG 3 cut(s) 84, 133, 225
BclI TGATCA 2 cut(s) 751, 763
BcoDI GTCTC 2 cut(s) 297, 442
BfaI CTAG 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 8 cut(s) 250, 729, 732, 735, 802, 963, 1010, 1140
BlsI GCNGC 8 cut(s) 251, 730, 733, 736, 803, 964, 1011, 1141
Bme1390I CCNGG 3 cut(s) 84, 133, 225
BmgBI CACGTC 2 cut(s) 950, 984
BmgT120I GGNCC 2 cut(s) 568, 998
BmiI GGNNCC 4 cut(s) 118, 193, 427, 885
BmrFI CCNGG 3 cut(s) 84, 133, 225
BmsI GCATC 5 cut(s) 364, 472, 472, 532, 1040
BpiI GAAGAC 2 cut(s) 498, 983
BpmI CTGGAG 2 cut(s) 154, 918
Bpu14I TTCGAA 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 792
BsaAI YACGTR 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 522
BsaHI GRCGYC 2 cut(s) 617, 683
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 899, 973
Bse1I ACTGG 3 cut(s) 676, 901, 1038
Bse3DI GCAATG 4 cut(s) 620, 701, 766, 817
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 3 cut(s) 84, 133, 225
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 5 cut(s) 52, 67, 889, 1001, 1031
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 3 cut(s) 40, 899, 973
BseMI GCAATG 4 cut(s) 620, 701, 766, 817
BseNI ACTGG 3 cut(s) 676, 901, 1038
BseSI GKGCMC 2 cut(s) 247, 1060
BseXI GCAGC 3 cut(s) 236, 715, 746
BseYI CCCAGC 1 cut(s) 366
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 3 cut(s) 87, 570, 1000
BshNI GGYRCC 2 cut(s) 116, 883
BshVI ATCGAT 1 cut(s) 792
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 1060
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 3 cut(s) 40, 899, 973
BsmAI GTCTC 2 cut(s) 297, 442
BsmBI CGTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 795
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 3 cut(s) 87, 570, 1000
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 247, 1060
Bsp143I GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
BspACI CCGC 6 cut(s) 732, 802, 963, 1010, 1067, 1140
BspANI GGCC 3 cut(s) 87, 570, 1000
BspDI ATCGAT 1 cut(s) 792
BspHI TCATGA 3 cut(s) 526, 583, 609
BspLI GGNNCC 4 cut(s) 118, 193, 427, 885
BspPI GGATC 4 cut(s) 186, 199, 256, 1077
BspT104I TTCGAA 1 cut(s) 278
BspT107I GGYRCC 2 cut(s) 116, 883
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 4 cut(s) 620, 701, 766, 817
BsrI ACTGG 3 cut(s) 676, 901, 1038
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
BssNI GRCGYC 2 cut(s) 617, 683
BssSI CACGAG 1 cut(s) 662
Bst2BI CACGAG 1 cut(s) 662
Bst2UI CCWGG 3 cut(s) 84, 133, 225
Bst4CI ACNGT 3 cut(s) 436, 592, 1083
BstACI GRCGYC 2 cut(s) 617, 683
BstAFI CTTAAG 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 879
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 247, 926, 960
BstF5I GGATG 5 cut(s) 52, 67, 889, 1001, 1031
BstKTI GATC 6 cut(s) 79, 194, 264, 754, 766, 1072
BstMAI GTCTC 2 cut(s) 297, 442
BstMBI GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
BstMCI CGRYCG 1 cut(s) 306
BstNI CCWGG 3 cut(s) 84, 133, 225
BstNSI RCATGY 1 cut(s) 962
BstSCI CCNGG 3 cut(s) 82, 131, 223
BstSLI GKGCMC 2 cut(s) 247, 1060
BstV1I GCAGC 3 cut(s) 236, 715, 746
BstV2I GAAGAC 2 cut(s) 498, 983
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 3 cut(s) 87, 570, 1000
BsuTUI ATCGAT 1 cut(s) 792
BtrI CACGTC 2 cut(s) 950, 984
BtsCI GGATG 5 cut(s) 52, 67, 889, 1001, 1031
BtsIMutI CAGTG 1 cut(s) 894
Cac8I GCNNGC 3 cut(s) 247, 926, 960
CciI TCATGA 3 cut(s) 526, 583, 609
Cfr13I GGNCC 2 cut(s) 568, 998
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 1 cut(s) 625
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 3 cut(s) 92, 445, 1041
CviJI RGCY 7 cut(s) 87, 164, 426, 570, 641, 1000, 1152
CviKI_1 RGCY 7 cut(s) 87, 164, 426, 570, 641, 1000, 1152
CviQI GTAC 3 cut(s) 92, 445, 1041
DpnI GATC 6 cut(s) 78, 193, 263, 753, 765, 1071
DpnII GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
EaeI YGGCCR 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 57, 1138
Eco72I CACGTG 1 cut(s) 879
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 3 cut(s) 82, 131, 223
EcoT22I ATGCAT 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 442
FaqI GGGAC 1 cut(s) 795
FauNDI CATATG 1 cut(s) 487
FbaI TGATCA 2 cut(s) 751, 763
Fnu4HI GCNGC 8 cut(s) 250, 729, 732, 735, 802, 963, 1010, 1140
FokI GGATG 5 cut(s) 39, 54, 876, 988, 1018
Fsp4HI GCNGC 8 cut(s) 250, 729, 732, 735, 802, 963, 1010, 1140
FspBI CTAG 1 cut(s) 36
GluI GCNGC 8 cut(s) 250, 729, 732, 735, 802, 963, 1010, 1140
GsaI CCCAGC 1 cut(s) 370
GsuI CTGGAG 2 cut(s) 154, 918
HaeIII GGCC 3 cut(s) 87, 570, 1000
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 625
Hin1I GRCGYC 2 cut(s) 617, 683
HincII GTYRAC 2 cut(s) 681, 1086
HindII GTYRAC 2 cut(s) 681, 1086
HindIII AAGCTT 1 cut(s) 639
HinfI GANTC 4 cut(s) 180, 290, 472, 1087
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 71, 239, 424
Hpy166II GTNNAC 3 cut(s) 681, 1058, 1086
Hpy188I TCNGA 5 cut(s) 76, 103, 688, 712, 751
Hpy188III TCNNGA 9 cut(s) 209, 301, 397, 469, 527, 584, 610, 662, 868
Hpy8I GTNNAC 3 cut(s) 681, 1058, 1086
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 2 cut(s) 81, 1035
HpyCH4III ACNGT 3 cut(s) 436, 592, 1083
HpyCH4IV ACGT 5 cut(s) 443, 683, 878, 949, 983
HpySE526I ACGT 5 cut(s) 443, 683, 878, 949, 983
Hsp92I GRCGYC 2 cut(s) 617, 683
Ksp22I TGATCA 2 cut(s) 751, 763
Kzo9I GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
LmnI GCTCC 2 cut(s) 135, 431
Lsp1109I GCAGC 3 cut(s) 236, 715, 746
LweI GCATC 5 cut(s) 364, 472, 472, 532, 1040
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 1 cut(s) 36
MaeII ACGT 5 cut(s) 443, 683, 878, 949, 983
MaeIII GTNAC 1 cut(s) 830
MalI GATC 6 cut(s) 78, 193, 263, 753, 765, 1071
MboI GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
MboII GAAGA 7 cut(s) 224, 503, 933, 936, 983, 1101, 1172
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 247, 1060
MlsI TGGCCA 1 cut(s) 87
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 3 cut(s) 299, 466, 1081
MmeI TCCRAC 2 cut(s) 38, 666
Mox20I TGGCCA 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 487
MscI TGGCCA 1 cut(s) 87
MseI TTAA 2 cut(s) 459, 573
MslI CAYNNNNRTG 2 cut(s) 608, 881
Msp20I TGGCCA 1 cut(s) 87
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 3 cut(s) 84, 133, 225
Mva1269I GAATGC 1 cut(s) 603
MvaI CCWGG 3 cut(s) 84, 133, 225
NdeI CATATG 1 cut(s) 487
NdeII GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
NlaIV GGNNCC 4 cut(s) 118, 193, 427, 885
NmuCI GTSAC 1 cut(s) 830
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 962
NspV TTCGAA 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 881
PaeI GCATGC 1 cut(s) 962
PagI TCATGA 3 cut(s) 526, 583, 609
PcsI WCGNNNNNNNCGW 1 cut(s) 980
PctI GAATGC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 8 cut(s) 251, 730, 733, 736, 803, 964, 1011, 1141
PleI GAGTC 3 cut(s) 298, 466, 1081
PmaCI CACGTG 1 cut(s) 879
PmlI CACGTG 1 cut(s) 879
PpsI GAGTC 3 cut(s) 298, 466, 1081
Ppu21I YACGTR 1 cut(s) 879
Psp6I CCWGG 3 cut(s) 82, 131, 223
PspCI CACGTG 1 cut(s) 879
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 3 cut(s) 82, 131, 223
PspN4I GGNNCC 4 cut(s) 118, 193, 427, 885
PspPI GGNCC 2 cut(s) 568, 998
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 3 cut(s) 93, 446, 1042
RsaNI GTAC 3 cut(s) 92, 445, 1041
RseI CAYNNNNRTG 2 cut(s) 608, 881
SaqAI TTAA 2 cut(s) 459, 573
SatI GCNGC 8 cut(s) 250, 729, 732, 735, 802, 963, 1010, 1140
Sau3AI GATC 6 cut(s) 76, 191, 261, 751, 763, 1069
Sau96I GGNCC 2 cut(s) 568, 998
SchI GAGTC 3 cut(s) 299, 466, 1081
ScrFI CCNGG 3 cut(s) 84, 133, 225
SduI GDGCHC 2 cut(s) 247, 1060
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 5 cut(s) 364, 472, 472, 532, 1040
SfuI TTCGAA 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 608, 881
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SphI GCATGC 1 cut(s) 962
SsiI CCGC 6 cut(s) 732, 802, 963, 1010, 1067, 1140
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 82, 131, 223
TaaI ACNGT 3 cut(s) 436, 592, 1083
TaiI ACGT 5 cut(s) 446, 686, 881, 952, 986
TaqI TCGA 4 cut(s) 278, 302, 480, 792
TatI WGTACW 1 cut(s) 91
TauI GCSGC 5 cut(s) 734, 804, 965, 1012, 1142
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 459, 573
Tru9I TTAA 2 cut(s) 459, 573
TscAI CASTG 1 cut(s) 901
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 3 cut(s) 249, 728, 734
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 6 cut(s) 56, 140, 172, 504, 572, 623
TspGWI ACGGA 2 cut(s) 989, 1038
TspRI CASTG 1 cut(s) 901
Vha464I CTTAAG 1 cut(s) 458
VneI GTGCAC 1 cut(s) 1056
XapI RAATTY 2 cut(s) 280, 1074
XceI RCATGY 1 cut(s) 962
XspI CTAG 1 cut(s) 36
ZraI GACGTC 1 cut(s) 684
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.