pycom02g13350

beta-galactosidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
9878538 .. 9879261
724 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13350.1

Sequence Viewer

Length: 603 bp
ATGTCTAATAAGTTACCTAATGATGGTTCATCCAATCATGATTCTTCTAACGGTTCGGTACAGGATGGTGATATACATGAGGTAAATTATGATGATTCTTCTACTTATCAATTGTCTCCACGAGCTAATCGTGGAAAACCTAAAGTACAATATAAGCCTGATATGCTTGCCAAAGCCAAGTATCCTATCAACAATTATGTGTCTACTCATCGTTTGTCCAAACCATATGCATCTTACATATGTCAGGTATCTAATGTATCAATTCCAACAAAATTGCAGGATGCTTTGTCTGACCCTAAGTGGGTTAATGCTATGAATGTTGAGATGGAAGCTTTGGAAAAGAATTCCACTTGGGATTGGTTCCTTTGCCAAAAGGGAAGAAAGTGGGATGTAGATGGTTGTTCACTCTTAAGCATAAAGCAGATGGTTTTATTGACCGCAGCAAATCATGATTGGCCCCTATTGCAGTTTAATGTGAAGAATGTTTTCCTTCATGGTGATCTCAAGGAGGAAGTTTCCAAAAGATGGATCTCCCACCTGGTATCAAAATATCTCCTAGAAAATGTGTTATGTGCATATTGCGAAAAGCTTTGTATGGCTTGA

Protein Analysis

201

Amino Acids

22.79

Weight (kDa)

7.61

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 525
AccI GTMKAC 1 cut(s) 203
AciI CCGC 1 cut(s) 438
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 2 cut(s) 60, 147
AfiI CCNNNNNNNGG 3 cut(s) 23, 301, 525
AflII CTTAAG 1 cut(s) 409
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 3 cut(s) 125, 332, 589
AluI AGCT 3 cut(s) 125, 332, 589
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 536
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 80, 509
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 452
BccI CCATC 6 cut(s) 17, 59, 319, 389, 418, 519
BciT130I CCWGG 1 cut(s) 539
BciVI GTATCC 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 557
BfrI CTTAAG 1 cut(s) 409
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 2 cut(s) 362, 458
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 2 cut(s) 239, 271
BpuEI CTTGAG 1 cut(s) 488
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 301, 525
BseBI CCWGG 1 cut(s) 539
BseGI GGATG 4 cut(s) 29, 70, 286, 394
BseLI CCNNNNNNNGG 3 cut(s) 23, 301, 525
BseXI GCAGC 1 cut(s) 452
BshFI GGCC 1 cut(s) 457
BslI CCNNNNNNNGG 3 cut(s) 23, 301, 525
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 457
Bsp143I GATC 2 cut(s) 499, 528
BspACI CCGC 1 cut(s) 438
BspANI GGCC 1 cut(s) 457
BspHI TCATGA 2 cut(s) 37, 448
BspLI GGNNCC 2 cut(s) 362, 458
BspPI GGATC 1 cut(s) 536
BspTI CTTAAG 1 cut(s) 409
BssMI GATC 2 cut(s) 499, 528
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 29, 70, 286, 394
BstKTI GATC 2 cut(s) 502, 531
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 499, 528
BstMWI GCNNNNNNNGC 2 cut(s) 163, 463
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstV1I GCAGC 1 cut(s) 452
BstX2I RGATCY 1 cut(s) 528
BstYI RGATCY 1 cut(s) 528
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 457
BtsCI GGATG 4 cut(s) 29, 70, 286, 394
Cac8I GCNNGC 1 cut(s) 168
CciI TCATGA 2 cut(s) 37, 448
Cfr13I GGNCC 1 cut(s) 456
CsiI ACCWGGT 1 cut(s) 537
Csp6I GTAC 2 cut(s) 59, 146
CviAII CATG 4 cut(s) 38, 77, 449, 494
CviJI RGCY 7 cut(s) 125, 157, 176, 332, 457, 589, 599
CviKI_1 RGCY 7 cut(s) 125, 157, 176, 332, 457, 589, 599
CviQI GTAC 2 cut(s) 59, 146
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 501, 530
DpnII GATC 2 cut(s) 499, 528
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 232
FaeI CATG 4 cut(s) 41, 80, 452, 497
FatI CATG 4 cut(s) 37, 76, 448, 493
FauNDI CATATG 2 cut(s) 226, 239
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 4 cut(s) 16, 77, 293, 401
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 557
GluI GCNGC 1 cut(s) 441
HaeIII GGCC 1 cut(s) 457
Hin1II CATG 4 cut(s) 41, 80, 452, 497
HindIII AAGCTT 2 cut(s) 330, 587
HinfI GANTC 2 cut(s) 41, 95
HphI GGTGA 2 cut(s) 80, 509
Hpy166II GTNNAC 2 cut(s) 204, 404
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 38, 449
Hpy8I GTNNAC 2 cut(s) 204, 404
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 230, 277, 466, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 463
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 4 cut(s) 41, 80, 452, 497
Kzo9I GATC 2 cut(s) 499, 528
LpnPI CCDG 6 cut(s) 47, 171, 230, 263, 524, 551
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 2 cut(s) 239, 271
MabI ACCWGGT 1 cut(s) 537
MaeI CTAG 1 cut(s) 557
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 501, 530
MboI GATC 2 cut(s) 499, 528
MboII GAAGA 4 cut(s) 36, 90, 390, 490
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 528
MluCI AATT 6 cut(s) 85, 110, 193, 261, 272, 343
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 2 cut(s) 73, 502
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 3 cut(s) 306, 410, 471
MspCI CTTAAG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 539
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 2 cut(s) 163, 463
NdeI CATATG 2 cut(s) 226, 239
NdeII GATC 2 cut(s) 499, 528
NlaIII CATG 4 cut(s) 41, 80, 452, 497
NlaIV GGNNCC 2 cut(s) 362, 458
NsiI ATGCAT 1 cut(s) 232
PagI TCATGA 2 cut(s) 37, 448
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 41, 95
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 362, 458
PspPI GGNCC 1 cut(s) 456
PsuI RGATCY 1 cut(s) 528
RsaI GTAC 2 cut(s) 60, 147
RsaNI GTAC 2 cut(s) 59, 146
SaqAI TTAA 3 cut(s) 306, 410, 471
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 2 cut(s) 499, 528
Sau96I GGNCC 1 cut(s) 456
ScrFI CCNGG 1 cut(s) 539
SetI ASST 8 cut(s) 19, 84, 127, 142, 249, 334, 540, 591
SexAI ACCWGGT 1 cut(s) 537
SfaNI GCATC 2 cut(s) 239, 271
SmlI CTYRAG 2 cut(s) 409, 503
SmoI CTYRAG 2 cut(s) 409, 503
Sse9I AATT 6 cut(s) 85, 110, 193, 261, 272, 343
SsiI CCGC 1 cut(s) 438
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 53
TasI AATT 6 cut(s) 85, 110, 193, 261, 272, 343
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 2 cut(s) 41, 95
Tru1I TTAA 3 cut(s) 306, 410, 471
Tru9I TTAA 3 cut(s) 306, 410, 471
TseI GCWGC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 18, 329, 482
Van91I CCANNNNNTGG 1 cut(s) 525
Vha464I CTTAAG 1 cut(s) 409
XapI RAATTY 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.