Prupe.2G169400_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000106
Physical Location & Seq
Reverse (-)
21690367 .. 21691061
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G169400.1

Sequence Viewer

Length: 429 bp
ATGGCACCAGACACTGATGCCAAACCAGTTGACAGAGAGAAGTCCTCATCCACAATCGATAGAGATGCATATGACTCTACCGATCCCTACTGCATACACCACTCAGATCATCCCGGCATAGTATTGGCTTCCATACCACTGACAGGTGATAACTATAGCACTTGGAGCCGTAAAGTACGAATTTCCTTGAGTCTGAAAAACAAAACAGGCTTTATTGAGGGTCCATTCTATTGGGACGAACTGGGTTCCTACAATGATACAGAAGTTTGCTCCTGTGGAGCAAAGAAGTCGTTGGCCGAGCGCGAGGAACAACAACGCTTGATGCAATTTTTGATGGGACTAAATGAATCCTATGCAGCGATCCGAGGGCAGATTCTCCTCATGGAGCCCTTGCCATCAGTTAGAATGGCATATTCCCTACTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

143

Amino Acids

15.94

Weight (kDa)

5.14

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 303
AclWI GGATC 2 cut(s) 77, 355
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 143
AlwI GGATC 2 cut(s) 77, 355
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 221
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 328, 403
BceAI ACGGC 1 cut(s) 153
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 270, 304
BcnI CCSGG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 154
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 5 cut(s) 6, 167, 222, 247, 387
BmrFI CCNGG 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 7, 55, 312
BmuI ACTGGG 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 26, 246
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 47, 109
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 26, 246
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 57
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 2 cut(s) 248, 351
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 248, 351
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 82, 106, 360
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 5 cut(s) 6, 167, 222, 247, 387
BspPI GGATC 2 cut(s) 77, 355
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 26, 246
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 3 cut(s) 82, 106, 360
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 47, 109
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 85, 109, 363
BstMBI GATC 3 cut(s) 82, 106, 360
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 154
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 2 cut(s) 47, 109
BtsIMutI CAGTG 2 cut(s) 12, 137
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 382
CviJI RGCY 5 cut(s) 128, 168, 210, 296, 388
CviKI_1 RGCY 5 cut(s) 128, 168, 210, 296, 388
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 103
DpnI GATC 3 cut(s) 84, 108, 362
DpnII GATC 3 cut(s) 82, 106, 360
EaeI YGGCCR 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 1 cut(s) 385
FaqI GGGAC 2 cut(s) 248, 351
FatI CATG 1 cut(s) 381
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 2 cut(s) 34, 96
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 357
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 4 cut(s) 74, 190, 347, 373
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 106, 195, 365
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 68, 93, 325, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 82, 106, 360
LmnI GCTCC 4 cut(s) 165, 275, 278, 385
LpnPI CCDG 7 cut(s) 21, 39, 127, 129, 192, 227, 286
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 3 cut(s) 7, 55, 312
MalI GATC 3 cut(s) 84, 108, 362
MboI GATC 3 cut(s) 82, 106, 360
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 180, 326
MlyI GAGTC 2 cut(s) 68, 199
MnlI CCTC 5 cut(s) 55, 211, 298, 359, 389
Mph1103I ATGCAT 1 cut(s) 70
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 70
NdeII GATC 3 cut(s) 82, 106, 360
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 5 cut(s) 6, 167, 222, 247, 387
NmeAIII GCCGAG 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 70
PfeI GAWTC 2 cut(s) 347, 373
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 2 cut(s) 68, 198
PpsI GAGTC 2 cut(s) 68, 198
PspN4I GGNNCC 5 cut(s) 6, 167, 222, 247, 387
PspPI GGNCC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 82, 106, 360
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 2 cut(s) 68, 199
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 390
SetI ASST 1 cut(s) 148
SfaNI GCATC 3 cut(s) 7, 55, 312
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 2 cut(s) 180, 326
StyD4I CCNGG 1 cut(s) 112
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 180, 326
TfiI GAWTC 2 cut(s) 347, 373
TscAI CASTG 2 cut(s) 19, 144
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 360, 414
TspRI CASTG 2 cut(s) 19, 144
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.