Rh6DG194500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000106
Physical Location & Seq
Reverse (-)
34803931 .. 34804569
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG194500.1

Sequence Viewer

Length: 639 bp
ATGGAACAGAAACAGAAAGAAGGGACAAAGCAAGAGAAAGAGACGAAAAAGCTAAAGAAAAAGAAGATGCACAAGAAAGCGGAAAAGAAAAAGAAAGAAAGGAAACAGAAAGAGAAGACAAAGCAAAAGAAAGAGAAACAAAAAAGGGCAGAAACGAAACAGAAAGAGAAGAAAAAGCAAACGAAGAAAAAGCAAAAGAAAGAGAAACAGAAAAAGACAGAAACGAAAGAAGAGAGAGGAACGATGGAGGAGCCGAAACAGAAGGGGACCAACTGCCTGTTTTGGGTCGAAATCAGGACCGGCGTGAACTGGACGCCGGCGGTAATCTGGGAATGGGGAACGACGACTACGTCGGTGGTCTGGAGAAGGGAAACGACGGACGGCCGGGAATGGAGGAAAGACCGCCATTGGACGACGCCGGCGATCTGGAGACGGGGAATGGCGATGACGTCGTTTGCGGTGACCTGGAGAACGCCACCATTTTGGATTATGGACAGAACGATGTGGTTTCAGATCAAGGACAGAACGATGTTGTTTCAGACAACAGTGAACCCGACTTGGAAGTCAAAACTTCTCCCTCTCCTTCATCTCTCCCCTCGAGCCAAATTCTCCAAGGTCCTGAAGGTCAACATGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

25.83

Weight (kDa)

10.54

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 349, 562
AatII GACGTC 1 cut(s) 452
AciI CCGC 4 cut(s) 80, 320, 403, 458
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 1 cut(s) 605
AcyI GRCGYC 3 cut(s) 314, 416, 449
AfiI CCNNNNNNNGG 1 cut(s) 283
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 2 cut(s) 35, 424
Ama87I CYCGRG 1 cut(s) 597
AoxI GGCC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 605
AspS9I GGNCC 3 cut(s) 267, 297, 616
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 472
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 3 cut(s) 267, 297, 616
BbsI GAAGAC 1 cut(s) 122
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 466
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 2 cut(s) 35, 424
Bme1390I CCNGG 2 cut(s) 386, 466
Bme18I GGWCC 3 cut(s) 267, 297, 616
BmeT110I CYCGRG 1 cut(s) 597
BmgT120I GGNCC 3 cut(s) 267, 297, 616
BmiI GGNNCC 2 cut(s) 252, 268
BmrFI CCNGG 2 cut(s) 386, 466
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 3 cut(s) 382, 448, 487
BpuMI CCSGG 1 cut(s) 386
BsaHI GRCGYC 3 cut(s) 314, 416, 449
BsaJI CCNNGG 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 3 cut(s) 299, 316, 418
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 382
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 1 cut(s) 384
BsiEI CGRYCG 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 4 cut(s) 300, 317, 385, 419
BslFI GGGAC 2 cut(s) 37, 280
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 35, 424
BsmBI CGTCTC 2 cut(s) 35, 424
BsmFI GGGAC 2 cut(s) 37, 280
BsnI GGCC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 597
Bsp143I GATC 2 cut(s) 423, 513
BspACI CCGC 4 cut(s) 80, 320, 403, 458
BspANI GGCC 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 252, 268
BsrFI RCCGGY 3 cut(s) 299, 316, 418
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 3 cut(s) 299, 316, 418
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 2 cut(s) 423, 513
BssNI GRCGYC 3 cut(s) 314, 416, 449
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 3 cut(s) 314, 416, 449
BstC8I GCNNGC 2 cut(s) 318, 420
BstEII GGTNACC 1 cut(s) 460
BstKTI GATC 2 cut(s) 426, 516
BstMAI GTCTC 2 cut(s) 35, 424
BstMBI GATC 2 cut(s) 423, 513
BstMCI CGRYCG 1 cut(s) 385
BstNI CCWGG 1 cut(s) 466
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 384, 464
BstV2I GAAGAC 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 483
BstZI CGGCCG 1 cut(s) 382
BsuRI GGCC 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 2 cut(s) 318, 420
Cfr10I RCCGGY 3 cut(s) 299, 316, 418
Cfr13I GGNCC 3 cut(s) 267, 297, 616
CseI GACGC 2 cut(s) 322, 424
CviAII CATG 1 cut(s) 631
CviJI RGCY 4 cut(s) 52, 253, 384, 602
CviKI_1 RGCY 4 cut(s) 52, 253, 384, 602
DpnI GATC 2 cut(s) 425, 515
DpnII GATC 2 cut(s) 423, 513
DrdI GACNNNNNNGTC 2 cut(s) 349, 562
DseDI GACNNNNNNGTC 2 cut(s) 349, 562
EaeI YGGCCR 1 cut(s) 382
EagI CGGCCG 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 3 cut(s) 267, 297, 616
Eco52I CGGCCG 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 616
EcoO65I GGTNACC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 2 cut(s) 35, 424
FaeI CATG 1 cut(s) 634
FaiI YATR 2 cut(s) 491, 632
FaqI GGGAC 2 cut(s) 37, 280
FatI CATG 1 cut(s) 630
GsuI CTGGAG 3 cut(s) 382, 448, 487
HaeIII GGCC 1 cut(s) 384
HapII CCGG 4 cut(s) 300, 317, 385, 419
HgaI GACGC 2 cut(s) 322, 424
Hin1I GRCGYC 3 cut(s) 314, 416, 449
Hin1II CATG 1 cut(s) 634
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HpaII CCGG 4 cut(s) 300, 317, 385, 419
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 3 cut(s) 307, 550, 628
Hpy188I TCNGA 2 cut(s) 513, 540
Hpy188III TCNNGA 4 cut(s) 295, 361, 427, 619
Hpy8I GTNNAC 3 cut(s) 307, 550, 628
Hpy99I CGWCG 5 cut(s) 346, 355, 379, 418, 454
HpyAV CCTTC 5 cut(s) 14, 256, 360, 593, 616
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 2 cut(s) 350, 449
HpyCH4V TGCA 1 cut(s) 70
HpySE526I ACGT 2 cut(s) 350, 449
Hsp92I GRCGYC 3 cut(s) 314, 416, 449
Hsp92II CATG 1 cut(s) 634
KroI GCCGGC 2 cut(s) 316, 418
KroNI GCCGGC 2 cut(s) 318, 420
Kzo9I GATC 2 cut(s) 423, 513
LmnI GCTCC 1 cut(s) 250
LweI GCATC 1 cut(s) 57
MaeII ACGT 2 cut(s) 350, 449
MaeIII GTNAC 1 cut(s) 460
MalI GATC 2 cut(s) 425, 515
MboI GATC 2 cut(s) 423, 513
MboII GAAGA 5 cut(s) 76, 127, 181, 196, 242
MluCI AATT 1 cut(s) 605
MnlI CCTC 6 cut(s) 230, 241, 387, 588, 606, 627
MreI CGCCGGCG 2 cut(s) 316, 418
MroNI GCCGGC 2 cut(s) 316, 418
MspI CCGG 4 cut(s) 300, 317, 385, 419
MspR9I CCNGG 2 cut(s) 386, 466
MvaI CCWGG 1 cut(s) 466
NaeI GCCGGC 2 cut(s) 318, 420
NciI CCSGG 1 cut(s) 386
NdeII GATC 2 cut(s) 423, 513
NgoMIV GCCGGC 2 cut(s) 316, 418
NlaIII CATG 1 cut(s) 634
NlaIV GGNNCC 2 cut(s) 252, 268
NmuCI GTSAC 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 597
PcsI WCGNNNNNNNCGW 2 cut(s) 347, 419
PdiI GCCGGC 2 cut(s) 318, 420
PflFI GACNNNGTC 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 464
PspEI GGTNACC 1 cut(s) 460
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 2 cut(s) 252, 268
PspPI GGNCC 3 cut(s) 267, 297, 616
PspPPI RGGWCCY 1 cut(s) 616
PspXI VCTCGAGB 1 cut(s) 597
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PsyI GACNNNGTC 1 cut(s) 349
Sau3AI GATC 2 cut(s) 423, 513
Sau96I GGNCC 3 cut(s) 267, 297, 616
ScrFI CCNGG 2 cut(s) 386, 466
SetI ASST 7 cut(s) 54, 353, 452, 467, 618, 627, 638
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 597
SgrAI CRCCGGYG 2 cut(s) 316, 418
SinI GGWCC 3 cut(s) 267, 297, 616
SlaI CTCGAG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 1 cut(s) 605
SsiI CCGC 4 cut(s) 80, 320, 403, 458
StyD4I CCNGG 2 cut(s) 384, 464
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 2 cut(s) 353, 452
TaqI TCGA 2 cut(s) 288, 598
TasI AATT 1 cut(s) 605
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 575
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 552
Tth111I GACNNNGTC 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 267, 297, 616
XapI RAATTY 1 cut(s) 605
XhoI CTCGAG 1 cut(s) 597
ZraI GACGTC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.