FvH4_6g13871

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000106
Physical Location & Seq
Forward (+)
8518867 .. 8519700
834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13871.t1

Sequence Viewer

Length: 834 bp
ATGGCAGGAGACGAAGACAACAAGCTGGTGGTTGAAAAGAACAAGGAATCGGCCTCAGCTTCACAGCGAAATCCTGAACCATGGGAGAACTCCAATCATCCACTATTTCTCCATCATTCGGATCAACCTGGCGCAATACTCATGTCACAACCGCTGATGGAAGACAAGTACACAGAATGGGTCCAATCAATGACCATGGCACTCACCATCAAGAACAAGAAGGGTTTTGTAGATGGCACTCTCAAACGACCAACTCATAACCCTGATAAACAACAACAATGGGATCGCTGCAACATCCTTGTCAAAACCTGGCTGCTGGGAGCCATGTCGAAGGAAATATCCAAGAGTGTCGTCCATTCCAAAGATGCAAGAGGTGTGTGGCTTGATCTTCAAGAAAGGTTTTCTCACACTAATACAGTTTTGCTGTTTCATACAGAAAATGCAATACATGATTGTGAACAGGGGGCAAACTCAGTCACATCTTATTTCACAAACCTTAAAGGCTTATGGGATGAGAAAGAAGCTCTTTGTGCGTTTCCACCTTGCACTTGTGAGGCAGCTATTGAAGTAAAGACCTACATGGAGACACAAAAGACCATGAAATTTTTGATGGGGCTCAATGAGAACTATGCAGCGATTCGAAGCACCATAATAGGCATGGATCCCCTTCCCAATGTCAACAAGGCATATTCAATGGCACTCCGCCATGAGAAGCAGGCGGAAGTTTCCAGTGGCAAGTCAATGGCCACACCAGAAGCATCTGCCTTTGTAGTTAAGAAGGTTACACGTGAGTTCAACCCTACAGATGGAGAAGCAAAATTTTGTGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

278

Amino Acids

31.27

Weight (kDa)

6.32

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 38 - 84 4.1e-15 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 152, 703, 719
AclWI GGATC 4 cut(s) 129, 291, 656, 669
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 2 cut(s) 602, 818
AcvI CACGTG 1 cut(s) 788
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 118, 806
AflIII ACRYGT 1 cut(s) 785
AgsI TTSAA 5 cut(s) 35, 392, 566, 693, 796
AjnI CCWGG 2 cut(s) 127, 308
AluBI AGCT 4 cut(s) 25, 59, 524, 560
AluI AGCT 4 cut(s) 25, 59, 524, 560
Alw26I GTCTC 2 cut(s) 3, 578
AlwI GGATC 4 cut(s) 129, 291, 656, 669
AoxI GGCC 2 cut(s) 51, 744
ApeKI GCWGC 4 cut(s) 288, 313, 557, 632
ApoI RAATTY 2 cut(s) 602, 818
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 640
AvaII GGWCC 1 cut(s) 181
BalI TGGCCA 1 cut(s) 746
BamHI GGATCC 1 cut(s) 661
BanII GRGCYC 1 cut(s) 618
BbrPI CACGTG 1 cut(s) 788
BbsI GAAGAC 2 cut(s) 21, 168
BbvCI CCTCAGC 1 cut(s) 55
BbvI GCAGC 4 cut(s) 275, 300, 569, 644
BccI CCATC 6 cut(s) 120, 151, 215, 227, 604, 800
BciT130I CCWGG 2 cut(s) 129, 310
BcoDI GTCTC 2 cut(s) 3, 578
BfmI CTRYAG 1 cut(s) 801
BisI GCNGC 4 cut(s) 289, 314, 558, 633
BlsI GCNGC 4 cut(s) 290, 315, 559, 634
Bme1390I CCNGG 2 cut(s) 129, 310
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 182, 322, 663
BmrFI CCNGG 2 cut(s) 129, 310
BmsI GCATC 2 cut(s) 355, 767
BpiI GAAGAC 2 cut(s) 21, 168
Bpu10I CCTNAGC 1 cut(s) 55
Bpu14I TTCGAA 1 cut(s) 640
BsaAI YACGTR 1 cut(s) 788
BsaJI CCNNGG 2 cut(s) 80, 195
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 806
Bse1I ACTGG 1 cut(s) 729
BseBI CCWGG 2 cut(s) 129, 310
BseDI CCNNGG 2 cut(s) 80, 195
BseGI GGATG 3 cut(s) 97, 294, 517
BseLI CCNNNNNNNGG 2 cut(s) 118, 806
BseMII CTCAG 2 cut(s) 69, 486
BseNI ACTGG 1 cut(s) 729
BseXI GCAGC 4 cut(s) 275, 300, 569, 644
BseYI CCCAGC 1 cut(s) 316
BshFI GGCC 2 cut(s) 53, 746
BslI CCNNNNNNNGG 2 cut(s) 118, 806
BsmAI GTCTC 2 cut(s) 3, 578
BsmBI CGTCTC 1 cut(s) 3
BsnI GGCC 2 cut(s) 53, 746
Bsp119I TTCGAA 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 4 cut(s) 121, 283, 385, 661
Bsp19I CCATGG 2 cut(s) 80, 195
BspACI CCGC 3 cut(s) 152, 703, 719
BspANI GGCC 2 cut(s) 53, 746
BspCNI CTCAG 2 cut(s) 68, 485
BspLI GGNNCC 3 cut(s) 182, 322, 663
BspPI GGATC 4 cut(s) 129, 291, 656, 669
BspT104I TTCGAA 1 cut(s) 640
BsrI ACTGG 1 cut(s) 729
BssECI CCNNGG 2 cut(s) 80, 195
BssMI GATC 4 cut(s) 121, 283, 385, 661
BssT1I CCWWGG 2 cut(s) 80, 195
Bst2UI CCWGG 2 cut(s) 129, 310
Bst4CI ACNGT 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 788
BstBI TTCGAA 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 2 cut(s) 55, 472
BstDSI CCRYGG 2 cut(s) 80, 195
BstF5I GGATG 3 cut(s) 97, 294, 517
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 4 cut(s) 124, 286, 388, 664
BstMAI GTCTC 2 cut(s) 3, 578
BstMBI GATC 4 cut(s) 121, 283, 385, 661
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 2 cut(s) 129, 310
BstSCI CCNGG 2 cut(s) 127, 308
BstSFI CTRYAG 1 cut(s) 801
BstV1I GCAGC 4 cut(s) 275, 300, 569, 644
BstV2I GAAGAC 2 cut(s) 21, 168
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 2 cut(s) 53, 746
BtgI CCRYGG 2 cut(s) 80, 195
BtsCI GGATG 3 cut(s) 97, 294, 517
BtsIMutI CAGTG 1 cut(s) 736
Cac8I GCNNGC 1 cut(s) 717
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 169
CviAII CATG 9 cut(s) 81, 142, 196, 325, 449, 580, 598, 658, 707
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 55, 472
DpnI GATC 4 cut(s) 123, 285, 387, 663
DpnII GATC 4 cut(s) 121, 283, 385, 661
EaeI YGGCCR 1 cut(s) 744
EciI GGCGGA 2 cut(s) 692, 734
Eco130I CCWWGG 2 cut(s) 80, 195
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 127, 308
EcoT14I CCWWGG 2 cut(s) 80, 195
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 2 cut(s) 80, 195
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 9 cut(s) 84, 145, 199, 328, 452, 583, 601, 661, 710
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 9 cut(s) 80, 141, 195, 324, 448, 579, 597, 657, 706
Fnu4HI GCNGC 4 cut(s) 289, 314, 558, 633
FokI GGATG 3 cut(s) 84, 281, 524
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 4 cut(s) 289, 314, 558, 633
GlaI GCGC 1 cut(s) 133
GluI GCNGC 4 cut(s) 289, 314, 558, 633
GsaI CCCAGC 1 cut(s) 320
HaeIII GGCC 2 cut(s) 53, 746
HhaI GCGC 1 cut(s) 134
Hin1II CATG 9 cut(s) 84, 145, 199, 328, 452, 583, 601, 661, 710
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HinfI GANTC 2 cut(s) 47, 637
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 171, 458, 679
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 74, 211, 392
Hpy8I GTNNAC 3 cut(s) 171, 458, 679
HpyAV CCTTC 4 cut(s) 214, 325, 677, 772
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 5 cut(s) 291, 368, 443, 546, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 2 cut(s) 55, 472
HpySE526I ACGT 1 cut(s) 787
Hsp92II CATG 9 cut(s) 84, 145, 199, 328, 452, 583, 601, 661, 710
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 4 cut(s) 121, 283, 385, 661
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 4 cut(s) 275, 300, 569, 644
LweI GCATC 2 cut(s) 355, 767
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 3 cut(s) 144, 475, 781
MalI GATC 4 cut(s) 123, 285, 387, 663
MboI GATC 4 cut(s) 121, 283, 385, 661
MboII GAAGA 3 cut(s) 26, 173, 380
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 1 cut(s) 618
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 2 cut(s) 602, 818
MluNI TGGCCA 1 cut(s) 746
MnlI CCTC 3 cut(s) 64, 365, 547
Mox20I TGGCCA 1 cut(s) 746
MscI TGGCCA 1 cut(s) 746
MseI TTAA 2 cut(s) 498, 774
MslI CAYNNNNRTG 1 cut(s) 453
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 129, 310
MvaI CCWGG 2 cut(s) 129, 310
MwoI GCNNNNNNNGC 1 cut(s) 530
NcoI CCATGG 2 cut(s) 80, 195
NdeII GATC 4 cut(s) 121, 283, 385, 661
NlaIII CATG 9 cut(s) 84, 145, 199, 328, 452, 583, 601, 661, 710
NlaIV GGNNCC 3 cut(s) 182, 322, 663
NmuCI GTSAC 2 cut(s) 144, 475
NspV TTCGAA 1 cut(s) 640
PfeI GAWTC 2 cut(s) 47, 637
PkrI GCNGC 4 cut(s) 290, 315, 559, 634
PmaCI CACGTG 1 cut(s) 788
PmlI CACGTG 1 cut(s) 788
Ppu21I YACGTR 1 cut(s) 788
Psp6I CCWGG 2 cut(s) 127, 308
PspCI CACGTG 1 cut(s) 788
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 2 cut(s) 127, 308
PspN4I GGNNCC 3 cut(s) 182, 322, 663
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 2 cut(s) 498, 774
SatI GCNGC 4 cut(s) 289, 314, 558, 633
Sau3AI GATC 4 cut(s) 121, 283, 385, 661
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 129, 310
SduI GDGCHC 1 cut(s) 618
SfaNI GCATC 2 cut(s) 355, 767
SfcI CTRYAG 1 cut(s) 801
SfuI TTCGAA 1 cut(s) 640
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 2 cut(s) 602, 818
SsiI CCGC 3 cut(s) 152, 703, 719
StyD4I CCNGG 2 cut(s) 127, 308
StyI CCWWGG 2 cut(s) 80, 195
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 790
TaqI TCGA 2 cut(s) 329, 640
TasI AATT 2 cut(s) 602, 818
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 2 cut(s) 47, 637
Tru1I TTAA 2 cut(s) 498, 774
Tru9I TTAA 2 cut(s) 498, 774
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 2 cut(s) 144, 475
TseI GCWGC 4 cut(s) 288, 313, 557, 632
Tsp45I GTSAC 2 cut(s) 144, 475
TspDTI ATGAA 2 cut(s) 419, 614
TspRI CASTG 1 cut(s) 736
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 2 cut(s) 602, 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.